Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNaBo_03g0011670 OGI:03023720 | 16/16 NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) Chr03:8970570-8975762
Gene Symbol -
DNA seq

cacgttttcccgttcgctacagcccgcaaactcggggtttccccgtcacgccagccgcccaagcacaactgcacagcagcggggactccgccggtgtgcgccgacgcgagccgcatcaaccagttaccgccacccgcgcggcaacggcagcggccgcggcagcgaatcggggccagggcaagggccaatccatcctcaccaaccgcaccaccaccaccaccaccaccaccgcaaccgaacaaaactcGGggaggccgcagaataaaggcgaggaggcagtttactattaccggcgcGgctggcctagtgtagtgcgcgctgtactgttcccacgtcgcgtcgaggcatcggttcgagcgagcgcgcgcgcgacgcgggcgaggctccggctcgattccgtcgccaccctgtgacagcagcagccaccgcccaccgccgccgccgctttctggaggcttcccgttggctcgtggttgcGgggggactcgcggagtcgcggttgcgagttggctgcctgctactctgctagtgtgctaagcctgccttttagttagtctgggagcacgctactgctacTttccccaatccaatccAatccaatccaatcctcgccggcgttggttcgctcgatcggcgcggcgcggatggagacgctcaggaagcaggccagcaagctcagggagcacgtcgccaagcagcagcaggtacgggttcctttgcccaattccagtggctccgtctccccactatgccaccaccaccgatcagcgcgtggcccgatgcgcggctaaaagaccggaatttgggagtgcggggagctgcgtggtcgggttactggagttcttgtttgctccccgcagttAattccgcatacctagtggtaggaatcagggtagggagtggcgagtgcttgggttgggatagcagcaGgccagcagttggtggaaggagctgaacatgaactgctcatttgctgcgcatttctgTAtatcagatgatttgttccgaagcttgagtttcacttgttccagtagatgtgcttgtttggtaactaataacagaattccttgtgattacaggctgttcggaagcagttcagtgcacgctataaccaggatccttctcttgtcgatgaggcggaacttgagtgccaccAGaatcttcagaggctatacaacagtacaagagctgctaaagtatgtgcTccaactgtttgttatatgtgatataagaaagttgtctagctcatgatgtaaaagttattgggcatatgtctcattgtatagcatttccaacgaagtattgtacgaggtgtcgaggGTttcattgctgtcagcaccaaacagatggagattggtaactgttaccatggaatatctgttcaacatccttccaaattttataatttttgtgtgatcacgttgcgatgtttcttcctgtagtgaaaaagctagctgaggattgttgcagatatggaaacgacaatcaaaattttggTtttattcttgcaagggcttcagttgagtttggtaattcccatagccaaatggagAaagagcGggagaatcttcttaaatttcttggagagcaggtgctgtcatattatcaTtttcctctctttcttaagttttcagaaccaagcaaaaacAaatacattgcaacatgcaacggatatttaaataaATatatcataaattgtatactcaaaaagatttatataaatcctagaggaaaacatatataatctgcaagcacacatcaatccctaaatagcatcattataagcatcatgcacttattttctaaaaaacacatgcacagatgttatgcttatcctcAaaacatcccactaactcaagatgtggTgtgcgatggcacttActatcaccaacaccaCtaacttattttatattgcatagaaatttcaatgctgcctagaatcttgtttaatgttcttaacctgaatattctaggttTcCATatatttttcTttttgtacccTtgacccttgagttacctgaaattaaatggtgttctcctgaaagtaacaaaacagtgtaaaaaacaaTtggtggaTtctactccaagagtacatattatatatggaagtttgctacaaacagaaacttaTtcagctttgctgatgcttgATatttaagttgatggacgtagcatagtttgTttatgcagtgcatggagctggagggaatttttttttTAttgCtgtgtaaaactgagtgccTtaattgcttcatttcggctccaatcttgcaggTttttgagcctcttcgagaaatgataatgagtgctCctcttgaagatgcccgCctgttaacttaccgttatcaaCggatcagacaagatatggaatctcaggtaattaCccgaagtgagacTtcctgTtcaccagagatgacaaccagatactaaaaataaattttattagatagctgatgtgatgagaaagcaactgaagtccaaggagagtagcggtaatgcagataattctgtgaaactgcaacatgcagaaTcaaaattatCtgagctccgaactacattatcagcattaggaagagaggcaactgcagctatggaggctgtggaggttcagcaacaacaggttacctttgaccgtctccttgcaatggtatgataagcctcactgttctcATaaaaaTattgcttaacgtcatcaaataatatgtttttgccAatggttaagacttcatgtacatggcaagttgagcctatccatcgtaacaacatggctatttCtcttttgctttgagTAtggtgtaaccaatacatgtacaccattaggggtagaaaactgtagacatcaaggtcacaataacctttgggttctgagcagaattggtgTttgtggccatgtttggatgttgctttttttttTCcctgtcaaccccaatgtgcaggcccCTttgttagttagagcatatctttgcaatatgttgaCccataatcctagaagttTCtgcatatctacgacaatgaaaaatcccactccaTtgtttaaggccttggttggttggggtggtttgtcccagtccttatAaaatttaatAccaggaaTttgatcggttttcctaagggcctggtattgactcttaagcccacactctcatacagggttccTtttctccctgctcaCcttagattgtaacaatcttatcttttatatcatgtggttgCttaagttCccatataaatttctcatctggatttccatttagtagttccagtacttataccatttgtccataggatgttcctttcataaagagtcaTgcaTCtccaaTttaccttatgacccacttgcaggTtgatgctgagagagCttatcatcagaatgctgctgatattctgaacaaacttcacgacgaggtacataactgttgcaaaagaaagaaatggagattcttacacctgttggcttagaggaaattcgaatgccataaacctggaaaaagtgtgtatgtttatgctgaatatcgctctgttttTGgtctgctaatttgcacagatggtccaagcaaaacaccAtgatgagccggaaaaccattatgatgagacatcatcagatcctaaaacagctgcaacacatgagCattcacgtagcacatccgaagatcacatatttactaatactagtgaacctacaaggactgaaaccagtgaacctacaaggactgaaactagtgaacctacaaggaatggtcaggaagtgcaTtatgttggagaggtatgtgtgccctttgcactgctgCtcataatgatcatAccagaacttataatgtgtcaccaactcacaacatcactgtttcaTttaattgcagtgcagtataaaatgttagaccttagcttgtattactggcattgTatctgtgctatctgtttatgagAtgttttagacatagatacaCcctcttacaaatatggtacTtcgactgaaTtttatgtCcacatgaTatatataaagCggtttgattcttcagccaccttagaagttaaaatttcgatagcatgagcaatacatatgtgaTtttttagaGctacTTTttttttaactttttaggaatggaatttagagctactgttggtaaagatggtagtctgaaatcatgtgaatttaaattcaaaaggtgcaacttgaacataccggtgtttcttcaacataaccttttaccTtaatctttacatttcactttattcctcTttacacctggtaaatactatcaccgaatgtcggtatggaagtcacctggtaaaaagaagcaaacatatacaggcaaaggataatcagtatatgccaaaattactagttcaacaattttagcagttacacaatcagtaaaacagatcagcacaTtattatacaagctgagcagtttgtgaattactcattggtcaggtaatccatccattcgatgctcaggctgatggcgagctcagtatttccgtgggagattatgttgtggtccggcaggtatacatggtttttgcaggTtttattcatgccatggggtaactaatgaccAaaattctgaagtaaagaaccatgtactgtataattcactgcggtagcatCctagtgtatacatctgtgaccgctgcaggactatgatcagatgcagtgcaagcatataattgtccCTTtgttatattttTAaTtctccaagggtgaccaGgggggaccagaatgctaactaagcaTtccttgtctgtcttcacaggtggctCccaatgggtggtctgaaGgggaatgcaaaggaaaagctggctggttcccatctgCctatgtggagcagagggacaaagccccggcaagtaaggtgatagagcctggattgctgactacttAatctctcTcatactaatagttgcttTCAtcgccctgttTCccctgtacatGgggtttttcttgagtgaatagcattttgtagaacttctacctttctgtgcatattcatgtgcttctaggcttgctgttacccaataattgtatgtAaaatttattgttttgcctttagcatctcgTtttctctttctttcacaaTgtatagagctattggtcctgggatgctgtaaccttCcctttcTtttgtggaaagcgtgcttcctgccaaaattgtgagatggaTttcagaacagtctcactggccttgttccttc

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CDS seq

atggagacgctcaggaagcaggccagcaagctcagggagcacgtcgccaagcagcagcaggctgttcggaagcagttcagtgcacgctataaccaggatccttctcttgtcgatgaggcggaacttgagtgccaccAGaatcttcagaggctatacaacagtacaagagctgctaaacatttccaacgaagtattgtacgaggtgtcgaggGTttcattgctgtcagcaccaaacagatggagattgtgaaaaagctagctgaggattgttgcagatatggaaacgacaatcaaaattttggTtttattcttgcaagggcttcagttgagtttggtaattcccatagccaaatggagAaagagcGggagaatcttcttaaatttcttggagagcaggTttttgagcctcttcgagaaatgataatgagtgctCctcttgaagatgcccgCctgttaacttaccgttatcaaCggatcagacaagatatggaatctcagatagctgatgtgatgagaaagcaactgaagtccaaggagagtagcggtaatgcagataattctgtgaaactgcaacatgcagaaTcaaaattatCtgagctccgaactacattatcagcattaggaagagaggcaactgcagctatggaggctgtggaggttcagcaacaacaggttacctttgaccgtctccttgcaatggTtgatgctgagagagCttatcatcagaatgctgctgatattctgaacaaacttcacgacgagatggtccaagcaaaacaccAtgatgagccggaaaaccattatgatgagacatcatcagatcctaaaacagctgcaacacatgagCattcacgtagcacatccgaagatcacatatttactaatactagtgaacctacaaggactgaaaccagtgaacctacaaggactgaaactagtgaacctacaaggaatggtcaggaagtgcaTtatgttggagaggtaatccatccattcgatgctcaggctgatggcgagctcagtatttccgtgggagattatgttgtggtccggcaggtggctCccaatgggtggtctgaaGgggaatgcaaaggaaaagctggctggttcccatctgCctatgtggagcagagggacaaagccccggcaagtaaggtgatagagcctggattgctgactacttAa

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Protein seq

METLRKQASKLREHVAKQQQAVRKQFSARYNQDPSLVDEAELECHQNLQRLYNSTRAAKHFQRSIVRGVEGFIAVSTKQMEIVKKLAEDCCRYGNDNQNFGFILARASVEFGNSHSQMEKERENLLKFLGEQVFEPLREMIMSAPLEDARLLTYRYQRIRQDMESQIADVMRKQLKSKESSGNADNSVKLQHAESKLSELRTTLSALGREATAAMEAVEVQQQQVTFDRLLAMVDAERAYHQNAADILNKLHDEMVQAKHHDEPENHYDETSSDPKTAATHEHSRSTSEDHIFTNTSEPTRTETSEPTRTETSEPTRNGQEVHYVGEVIHPFDAQADGELSISVGDYVVVRQVAPNGWSEGECKGKAGWFPSAYVEQRDKAPASKVIEPGLLTT

Function SH3 domain-containing protein 1 [UniProtKB/Swiss-Prot:Q9C865]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNaBo_03g0011670 OsNaBo_03g0011670.01 Chr03 8970570 8975762 + NAM
CDS seq

atggagacgctcaggaagcaggccagcaagctcagggagcacgtcgccaagcagcagcaggctgttcggaagcagttcagtgcacgctataaccaggatccttctcttgtcgatgaggcggaacttgagtgccaccAGaatcttcagaggctatacaacagtacaagagctgctaaacatttccaacgaagtattgtacgaggtgtcgaggGTttcattgctgtcagcaccaaacagatggagattgtgaaaaagctagctgaggattgttgcagatatggaaacgacaatcaaaattttggTtttattcttgcaagggcttcagttgagtttggtaattcccatagccaaatggagAaagagcGggagaatcttcttaaatttcttggagagcaggTttttgagcctcttcgagaaatgataatgagtgctCctcttgaagatgcccgCctgttaacttaccgttatcaaCggatcagacaagatatggaatctcagatagctgatgtgatgagaaagcaactgaagtccaaggagagtagcggtaatgcagataattctgtgaaactgcaacatgcagaaTcaaaattatCtgagctccgaactacattatcagcattaggaagagaggcaactgcagctatggaggctgtggaggttcagcaacaacaggttacctttgaccgtctccttgcaatggTtgatgctgagagagCttatcatcagaatgctgctgatattctgaacaaacttcacgacgagatggtccaagcaaaacaccAtgatgagccggaaaaccattatgatgagacatcatcagatcctaaaacagctgcaacacatgagCattcacgtagcacatccgaagatcacatatttactaatactagtgaacctacaaggactgaaaccagtgaacctacaaggactgaaactagtgaacctacaaggaatggtcaggaagtgcaTtatgttggagaggtaatccatccattcgatgctcaggctgatggcgagctcagtatttccgtgggagattatgttgtggtccggcaggtggctCccaatgggtggtctgaaGgggaatgcaaaggaaaagctggctggttcccatctgCctatgtggagcagagggacaaagccccggcaagtaaggtgatagagcctggattgctgactacttAa

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Protein seq

METLRKQASKLREHVAKQQQAVRKQFSARYNQDPSLVDEAELECHQNLQRLYNSTRAAKHFQRSIVRGVEGFIAVSTKQMEIVKKLAEDCCRYGNDNQNFGFILARASVEFGNSHSQMEKERENLLKFLGEQVFEPLREMIMSAPLEDARLLTYRYQRIRQDMESQIADVMRKQLKSKESSGNADNSVKLQHAESKLSELRTTLSALGREATAAMEAVEVQQQQVTFDRLLAMVDAERAYHQNAADILNKLHDEMVQAKHHDEPENHYDETSSDPKTAATHEHSRSTSEDHIFTNTSEPTRTETSEPTRTETSEPTRNGQEVHYVGEVIHPFDAQADGELSISVGDYVVVRQVAPNGWSEGECKGKAGWFPSAYVEQRDKAPASKVIEPGLLTT

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.433062 9.870728 6.360941

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_03g0266700 RBH 1.282196 1.736216 3.444662
Nipponbare | IRGSP 1.0 | MSU LOC_Os03g16000 RBH 0.749199 1.021632 0.766165
Nipponbare | IRGSP 1.0 | RAP-db Os03g0266700 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_03g0012150 RBH 0.901353 16.807890 7.035026
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_03g0011970 RBH 0.179686 1.006680 1.215412
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_03g0012000 RBH 1.182697 13.480611 6.825061
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_03g0011950 RBH 0.319949 0.182774 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_03g0011830 RBH 4.174611 10.815920 15.474483
Minghui 63 | MH63RS3 | HZAU OsMH63_03G0149100 RBH 7.3099275 23.4416865 22.5649405
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_03g0011730 RBH 0.217300 1.071614 1.203019
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_03G0150500 RBH 10.4465275 12.8938275 34.446829
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_03g0011860 RBH 0.076907 0.284265 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_03g0011940 RBH 0.000000 10.425753 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_03g0011930 RBH 3.832751 17.031614 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_03g0011880 RBH 0.512467 0.286605 1.226269
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_03g0011820 RBH 0.055197 7.116042 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_03G011790 RBH 0.311604 4.633777 2.296457
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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