Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0009060 | OGI:03017540 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:6769408-6772690 | ||||||||
| Gene Symbol | RLCK104, OsRLCK104 | ||||||||||
| DNA seq | gccttctccttcttctccgacggcgaacaccgtccatcgcgagaactcttacctcgtcggcgtcggcgtcggcgaggaggaggagcaaacatttacggctggcttgcaatcttaatcgtacgtacttcttcatggcatatcttgtacagtatttaTtttttttaatccattaaaagcgtggttgtttttcattgtcctgtccgacgaacaaggccttaaaagttGAcatgcatctcgtgaaaaggaaaaaaaaaagaagcaacgTtttctattgatttgttgcggccagcaacaccttttccattccgtgttctatccatgcgcggtttttctctatctgacggtcgtgacaatttcagttttgcagtgttcgtcattcaggaggctcccggccgatccggtggatcggatcggagcgggagcacaaactgcaaattgccacggtccttgcacttgatttccggagccaggaggatgatttgctgcggcggcgaggaggaggagacgtacgctccccgtgcagccagtcgcagtcgcagccggcgcccgacacctgcgacgcagtacaatgcaggtgaaatcccgccgtttcctcctccggttctgcaggtggttagctgaaacagaggccaaggtgctcaactgtatAatgttgcatcgtgatgataattgaattggcagaaagttcagattAaataccgcactgccagctctgtctttcTtagtttcagaggcaattttaatctgaactttcagaaagAaaaattgtatagataagcagctgtaattttttgagggaaaataagaagctgtaattcgttatgactaccatccatattctctgttctaattggatacccatctgcacattcagatttaatgctcaagttactcactataccaaacatcagtaggagaaggtcgtagttcaatcgaccaatttgtgttgccttcgcagcatctcattttagaacttactagtacaagaTtcttcaacaaggccacatcaacttatgtcATCAatacagagagtttagcacggagtatgccacaatccTtatgctgaatctgaagactgaaaattgtgcaaatctcctgtttttggTtgtgtatcaggccctcgtaagccaagaggaccaaatgcacccaggagcggcggcccgccaccgaaggtactctccatcgacgtgccagccatctccatgggcgagctgaacaacatcaccggAcactttggacagagtgccttgataggagaaggttcgtacggtcgaatctacagggcggtgctgacctccGgggagccggttgccataaaaaAGcttgatcccagcgtgtcaagcgactctgaagcagacTtctctgctcaggttaacgatcagtaaaacaattacacaacggattcgtgttcaacatcaaacttttgtgctgcaaatctacgttgctgattaaaaccatctggttccgtggacatgcagctgtcaatggtttcgaggctcaagaacgagtatttcatccggctgatgggctactacctggatgcaaaccgaagaatcctggtctaccagtttgccacgcacggCTccctgcatgacatcctacacggtatacaaattcttcctccattctgatgatctacaggcattaatgaccacaggtttacagcgaattcttcttggcacatgaaacctgacacgacgtgttggtcgatccggaaaccAaaaaaaaaaaaaaaactgcagggaagaagggcgtgagggacgcggcgccggggccggcgctgaactggagccagcgggtgaaggTAacgtacGgcgccgcgagagggctcgagtacctccacgagaaggcccagccgcccatcgtccaccgcgacgtgcggtcgagcaacgtgctcctcttcgacggctacgagtccaagctcgccgacttcaacctcaccacccagcctcccgacggcgccgcgcggctgcactccacccgcgtcctcggaaccttcggctaccacgcgcccgagtaatacattctgtgtctgaatccacactgtgtttgattggagaaaaacatgatcagaagatcagtAGattaattgactttcggtaagaaaggtcaaggttaatttttgaccgggcaaatggattctctctttcgctttctgaaggtacgcgatgacgggacagcttaatcagaagagcgatgtgtacagtttcggagtcatcctactggagttactgaccggcaggaagccagtggaccataccatgccgaagggacagcagagtcttgtaacctgggtagtgtagtaggccatgttcttgcacatcttgttggagcttttcatgtgttccaagagccatatgctcttgtggttgtctgaattctggtttttttttttGgacaatgctgaatttctgaacattttctactggtgaaatggactaggcgacgccaaggttgagcgaggacaaggtgaggcagtgcgtggatccgaaactcggggatgactatcctccaaaagcagttgccaaggtaatacaagaccatcagtttcttgcaagtttgcaggaacgatctgagatgctatcttgtcgtgcgttgtgtgtgttttcagatggcggcggtagcggcgttgtgcgtgcaatacgagtcagatttccggccgaacatgaccatcgtggtgaaggcgctgcagccacttctcagcaagccagccggagcaggagggccctagcagcacatgcatactaacaccagcccatgcatcaaaccaacttagcatccaaaacacattatgtgctctgttcttcttggatgctgagacttgttaaacagctggtgattgtaccatgtactactcacaaatcaatcAaactgctaaaagggTccaagggctcacagagtttcaggtcattggctgtgattctccattgttccttcagtccttacctttgtttaggtttcagatcagtagatatttttgcaatttcgctgtcccgttctgtaggtacgtaagggtccattccactgcatgactgcaagctacgtcgtgttcttatcttaagacatttattgacatcacaccgatgggagacaaactgacaaccgaaggactgtagagaaaatagGAggcctccttatcaaagagagaaacattaatagagacaatatctcagtgtagctgcagtttgtgatgactgtggcttgattgttcgcattacgctgtcagctgttatgggttagtagttataactttctcactatgaacagatgatattttcatttc
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| CDS seq | atgatttgctgcggcggcgaggaggaggagacgtacgctccccgtgcagccagtcgcagtcgcagccggcgcccgacacctgcgacgcagtacaatgcaggccctcgtaagccaagaggaccaaatgcacccaggagcggcggcccgccaccgaaggtactctccatcgacgtgccagccatctccatgggcgagctgaacaacatcaccggAcactttggacagagtgccttgataggagaaggttcgtacggtcgaatctacagggcggtgctgacctccGgggagccggttgccataaaaaAGcttgatcccagcgtgtcaagcgactctgaagcagacTtctctgctcagctgtcaatggtttcgaggctcaagaacgagtatttcatccggctgatgggctactacctggatgcaaaccgaagaatcctggtctaccagtttgccacgcacggCTccctgcatgacatcctacacgggaagaagggcgtgagggacgcggcgccggggccggcgctgaactggagccagcgggtgaaggTAacgtacGgcgccgcgagagggctcgagtacctccacgagaaggcccagccgcccatcgtccaccgcgacgtgcggtcgagcaacgtgctcctcttcgacggctacgagtccaagctcgccgacttcaacctcaccacccagcctcccgacggcgccgcgcggctgcactccacccgcgtcctcggaaccttcggctaccacgcgcccgagtacgcgatgacgggacagcttaatcagaagagcgatgtgtacagtttcggagtcatcctactggagttactgaccggcaggaagccagtggaccataccatgccgaagggacagcagagtcttgtaacctgggcgacgccaaggttgagcgaggacaaggtgaggcagtgcgtggatccgaaactcggggatgactatcctccaaaagcagttgccaagatggcggcggtagcggcgttgtgcgtgcaatacgagtcagatttccggccgaacatgaccatcgtggtgaaggcgctgcagccacttctcagcaagccagccggagcaggagggccctag
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| Protein seq | MICCGGEEEETYAPRAASRSRSRRPTPATQYNAGPRKPRGPNAPRSGGPPPKVLSIDVPAISMGELNNITGHFGQSALIGEGSYGRIYRAVLTSGEPVAIKKLDPSVSSDSEADFSAQLSMVSRLKNEYFIRLMGYYLDANRRILVYQFATHGSLHDILHGKKGVRDAAPGPALNWSQRVKVTYGAARGLEYLHEKAQPPIVHRDVRSSNVLLFDGYESKLADFNLTTQPPDGAARLHSTRVLGTFGYHAPEYAMTGQLNQKSDVYSFGVILLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVRQCVDPKLGDDYPPKAVAKMAAVAALCVQYESDFRPNMTIVVKALQPLLSKPAGAGGP |
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| Function | Probable protein kinase At2g41970 [UniProtKB/Swiss-Prot:P93749] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0009060 | OsNaBo_03g0009060.01 | Chr03 | 6769408 | 6772690 | + | NAM | ||
| CDS seq | atgatttgctgcggcggcgaggaggaggagacgtacgctccccgtgcagccagtcgcagtcgcagccggcgcccgacacctgcgacgcagtacaatgcaggccctcgtaagccaagaggaccaaatgcacccaggagcggcggcccgccaccgaaggtactctccatcgacgtgccagccatctccatgggcgagctgaacaacatcaccggAcactttggacagagtgccttgataggagaaggttcgtacggtcgaatctacagggcggtgctgacctccGgggagccggttgccataaaaaAGcttgatcccagcgtgtcaagcgactctgaagcagacTtctctgctcagctgtcaatggtttcgaggctcaagaacgagtatttcatccggctgatgggctactacctggatgcaaaccgaagaatcctggtctaccagtttgccacgcacggCTccctgcatgacatcctacacgggaagaagggcgtgagggacgcggcgccggggccggcgctgaactggagccagcgggtgaaggTAacgtacGgcgccgcgagagggctcgagtacctccacgagaaggcccagccgcccatcgtccaccgcgacgtgcggtcgagcaacgtgctcctcttcgacggctacgagtccaagctcgccgacttcaacctcaccacccagcctcccgacggcgccgcgcggctgcactccacccgcgtcctcggaaccttcggctaccacgcgcccgagtacgcgatgacgggacagcttaatcagaagagcgatgtgtacagtttcggagtcatcctactggagttactgaccggcaggaagccagtggaccataccatgccgaagggacagcagagtcttgtaacctgggcgacgccaaggttgagcgaggacaaggtgaggcagtgcgtggatccgaaactcggggatgactatcctccaaaagcagttgccaagatggcggcggtagcggcgttgtgcgtgcaatacgagtcagatttccggccgaacatgaccatcgtggtgaaggcgctgcagccacttctcagcaagccagccggagcaggagggccctag
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| Protein seq | MICCGGEEEETYAPRAASRSRSRRPTPATQYNAGPRKPRGPNAPRSGGPPPKVLSIDVPAISMGELNNITGHFGQSALIGEGSYGRIYRAVLTSGEPVAIKKLDPSVSSDSEADFSAQLSMVSRLKNEYFIRLMGYYLDANRRILVYQFATHGSLHDILHGKKGVRDAAPGPALNWSQRVKVTYGAARGLEYLHEKAQPPIVHRDVRSSNVLLFDGYESKLADFNLTTQPPDGAARLHSTRVLGTFGYHAPEYAMTGQLNQKSDVYSFGVILLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVRQCVDPKLGDDYPPKAVAKMAAVAALCVQYESDFRPNMTIVVKALQPLLSKPAGAGGP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.251250 | 0.0 | 25.962889 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0226300 | RBH | 0.0 | 0.0 | 12.913059 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g12520 | RBH | 0.0 | 0.0 | 3.324073 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0226300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0009420 | RBH | 0.0 | 0.0 | 4.551827 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0009270 | RBH | 0.0 | 0.0 | 11.078325 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0009350 | RBH | 0.267431 | 0.0 | 20.987604 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0009270 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0009140 | RBH | 0.0 | 0.0 | 13.785570 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0109900 | RBH | 0.313242 | 0.061907 | 0.2919665 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0009080 | RBH | 0.0 | 0.0 | 8.297072 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0110300 | RBH | 0.316225 | 0.024967 | 0.8535515 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0009150 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0009230 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0009180 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0009220 | RBH | 0.0 | 0.000000 | 1.733171 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0009180 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G009180 | RBH | 0.0 | 0.0 | 2.927696 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
