Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsNaBo_03g0007130		OGI:03014380 \| 4/16			NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)			Chr03:5363517-5363705		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		atgggcGgcggcggcggcgggaggccgacggcgagcGgggcgaacagcagcagcaGcagcGAtgatgacggggacgccgcctggaaggcggccatcgaatccatcgccgcagtgggTttcggcctgccgctgtccaacggcgcggcgaaggccacctctggcggcggcggcgcaagcacctgggcttaa
CDS seq		atgggcGgcggcggcggcgggaggccgacggcgagcGgggcgaacagcagcagcaGcagcGAtgatgacggggacgccgcctggaaggcggccatcgaatccatcgccgcagtgggTttcggcctgccgctgtccaacggcgcggcgaaggccacctctggcggcggcggcgcaagcacctgggcttaa
Protein seq		MGGGGGGRPTASGANSSSSSDDDGDAAWKAAIESIAAVGFGLPLSNGAAKATSGGGGASTWA
Function		-

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsNaBo_03g0007130	OsNaBo_03g0007130.01	Chr03	5363517	5363705	+	NAM
CDS seq	atgggcGgcggcggcggcgggaggccgacggcgagcGgggcgaacagcagcagcaGcagcGAtgatgacggggacgccgcctggaaggcggccatcgaatccatcgccgcagtgggTttcggcctgccgctgtccaacggcgcggcgaaggccacctctggcggcggcggcgcaagcacctgggcttaa
Protein seq	MGGGGGGRPTASGANSSSSSDDDGDAAWKAAIESIAAVGFGLPLSNGAAKATSGGGGASTWA

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	0.000000	0.0

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_03g0201200	RBH	0.985444	0.757948	2.406551
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os03g10410	RBH	0.651935	0.498712	0.606039
Nipponbare \| IRGSP 1.0 \| RAP-db	Os03g0201200	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_03g0007430	RBH	1.017299	5.101829	1.943262
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_03g0007400	RBH	0.000000	1.913518	0.709841
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_03g0007450	RBH	1.821108	8.240445	4.561619
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_03g0007420	RBH	0.222562	0.311062	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_03g0007300	RBH	3.723685	4.361032	6.208744
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_03G0089400	RBH	2.5569985	5.465985	3.0836835
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_03g0007220	RBH	0.228777	0.994823	0.825670
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_03G0089800	RBH	3.110519	3.0375535	8.826972
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_03g0007260	RBH	0.123501	0.036228	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_03g0007320	RBH	0.317800	3.596946	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_03g0007300	RBH	1.752773	1.879241	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_03g0007320	RBH	0.247306	0.071177	0.308641
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_03g0007290	RBH	0.208412	6.131985	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA

Custom TreePlot

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.