Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0005980 | OGI:03011670 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:4359219-4365149 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaagcccctcgatgaaagcgacaaccttgcaattgattggacctcatcgttcttgtccccgtcctggtgccagctgctgctccgctacttcccactgcgcgattcaagaacacggaggaaggttgaaactctgaaagcagcagcagatacaggaggagataagataagtaaattaattggaagaaagaaatcagtggggaggaggctatagaagggatctttcatgcgaggaaagcgcctttctttgcgtttttagtggggagagcgtgtgagcattggtgtggggggagaagaagaagatgggaagagcggatgcgccatggctgccgcttctgctcctgtgctcctcctgctgcttctgcatttggccccagaagcaaatcttggtcgctgcagacaccgaccctaatgatggtaagctagaatctggaatcttctccccttttttgcgcgattgttctttcTttttttcttttctgtttttgtttcagagctgctggattaatcggtggagttcttcgcttgatgtctgtgtttgtgttttctgttgcggttcgtccggctggtttgctgattctggcgctgtttgtacggagttttctgtagattcggttttggaacggggaaatggatgtgaaagcttccgattaatcgaatctttcttcattttttacttgcgaaatctggtctttgcgcaagaatgctcttgatttacgtctgttcgacatagtgaacaagatggtgtgtgaatttcggcagcttataattctcatttttgggttgataaaaatggggtctttctgcccctggggtagttaagttgtgctaatccgagtaaggaaatacactggattcggttggaaatcttgcatgtccattctttttctgctgtttctactaaccaaatttggcctatgctatgtacctagctatctcagttatggttgcacttttgcttgctgaatctcaattgaggaggaatttcgtgcaaaacattgtctggattgcgaggggcaatttttgagaacaaattttagtttagcagttccaagaagaaaatgcagtcgttttccttacacctacctctagatttgaccctccttttctcttcttttttgccttattgctcgttggagcatggcaagaattggtcaaaaattgctatgagcatttcagctttcttttttttttctttcttttcttttttgcgattttcctcttaagatgtcatgctatttactcttgcaaatctgaatccatgcattggtgtctatgggcacttcaaatttcaagtttgctaatgtgtttgtttggtgacatactgacatgcattatacagtgttgcaattaggcccggcgaaaaacgtgtagtaattatttgctctttttcatgcagttactgtcctcaatacgctcttcactagcctgaattctccggggcagctcaaaggttggcaggcaagtggtggagacccttgtggccaatcatggcagggtatcacgtgctcaggatcatcagttactgcaatgtgagcctcatcatgaagcaaagtagtttactacttactcgaccaccttctttcttacttcttacaatattttctttgtgtttgatgttgtagcaaattaccaagcttggggctctccggtaatttggcgtacaatatgaataccatgggttcattgattgagatgtgagtatctgacattattcatatctgatcctgtcaagtgacaattcagttgataacagtcttaattgattttttaatgcagcgatatgagccaaaacaaccttggtggtggccaacagatacagtacaatcttcccactaataagcttgagaggctgtaagttcctcaaatgaagttgtggtttagaaagtacatcagcttttctggtgtctgtgtgctaagtggttattgtttgcagcaatctcgcaggaaaccagttcactggaaatttaccctactcgattttctcgatgtctaatcttaagtatttgtgagtatctttgcaaacatcaagttgattttgcttttaaatttgtataatttggtagagctaaatgttttctctttgtatgtgcagaaatctaaatcataaccaattgcaaggaaatataactgatgtattttccagcctctatagcttgacaacactgtgagtacttttgtgtgcgtggattgtagacgggtcttaacttgtgtattgtaaaatccttctttgttgttcatattcctaatgtctatattcactttccatttccctatgtgatgtgatgcagggatctttcctttaattctcttgctggtgacctaccacaagggttcacatcattgtcaagcctgaagaaattgtaagaaaatgattgtttttctctcatagatatgtctttttggagtgacatgcctgtaatcccatactcgttcttctcagatatctgcagaacaatcaatttactggttatatcaatgtccttgctaatctcccccttgatgatctgtaagaaatcaacctataagtaattaatattttatttgcacgtgcagtaccacatctcatatctttgctttcctataggaatgttgcaaacaatcatttcactggctggattcctagtcaacttaagaagataaacaatctacagtgagttctctttgcttataaacatgtaaaaatgtatgagagatgtaccctgaactaataagatccctgtgtacagaactgacggaaattcttggagtaatggaccagcaccaccacctccaccgtattcagctccacctccaccaaaccgtccaaacagcccaggtcaaaacaatggtggttcaagttctggtggaagctctgggataggtggtggaggtgtagcaggcattatcatatcattgctggtagttggagcagtcgttgcattctttgtgataagaagaagaaaacgcagagcggcattggaagaacaTtttgaacagcaccagccattcacttcgttcccttcaaacgaagttaaaggtctgtttgcctgatgccttgctgatcatcatactttagttttgttatatattttgtacaattatctgaaaatttgcttctgaaaatgtgcagacatgaagcctattgaagagtctactacaatagatgtagagtctttgccatcccctgcttcatttagtctgaagccaCcccccaagattgaacgccacaagtctttcgatgatgatgatttatcaaacaagcctgtcttgaagaaaaccaatgtggcacctataaaggcaactgtttattcagttgcagatctacagatggcaacagaaagctttagcatggacaaccttgttggggaaggtacttttggacgtgtatacagggcacagtttactggtggaaaggtatgctacaattttttctattgctattcctgtatatttctcaaagtaaatgaaaggtagcatgtgtattcattatcacattagtcaaaaggtggaaatgcaaagctaagaaaaaaaagccttaaaatctgtcatgacctcatgaacagaaacaattgagcatagaagtattcctcataaattggaggccgtatagttcttaatgttagtttcaatttttatgttaccgtatttcccctttttgcttttgaagttatttcgagggtgatacaggttggacatttagatataggcaaaattctgagagcttacttttcttgtttacactattcaggttctggccgtgaagaaacttgatagtaccgtgatgccattccattcatctgatgattttgctgaactggtctcagacatttcaaaactgcatcatccgaatctcaatgagcttgtgggctattgcatggaacatgggcaacacttgcttgtttacgatttccacaggaatgggtcactccatgatctactccatctttcagacgaatacagcaagccacttagctggaactctcgtgtcaagatcgcactaggctctgcccgtgcactggagtaagtgaaaaatctctccatattatgttgatctgctgttttggcattatactacatgttattaattttgtacgattttagccatcatgtgtgtccagattgaactaaacaagggccttgtttcttttcattcattatccataaaagttacaaaccaactgatttattactagtttcacaaatttaattagcaatccttttgttcatggaaattgaagtaagaatactgctgtcaaccatatcgtaccatcagaatctcgctaaacttggaaatatcctttgcatgttgtgtttatgtgtagaatgacagttgctagtttcatgctttgtttgaatgtggatgacagttatacattatggaataatagtccttttatatagaattctatgctcattttgaaatatgatatgtgacatcttatcatttcctctgaaaatataatctgtagatatcttcatgaaatttgttctccatccatcatccataagaatttcaagtcatccaaccttctactggattcagaattcaatccacacctttcagatgctggacttgcaagctttatttctgatgcagaattccaggtatggctcttgctgatatatccaagcacccattttaagaggacaattgtttggacagttgtgtgttaattaaaaaaaaaatagcactcagatgaaccttcgcttgctaaactaccaagaaaactgactactggacttacagaaattgttggcgaattgatgtagtcatgtagaggctgtattaattttcttaattgaaaagagaagtttatggcaatgatgtcacaccttttatacatcttgattcactagtgattgtattaatgttcgtcacggaaaaaaaaaaaactatgcaggcagcgcaacagagtgctgggtgcactgccccagaggtggacatgactggtcagtacacactgaagagcgatgtctacagctttggagtagtcatgctagagcttttgacgggacgcagacctttcgataggtaacttgatcttctcatcagtcgtaaccagtttccagcttgcgcataactataaatctagtgctaactgatgaacctcggtataatcgtgtgactttgcattacagcactagaccgaggtcagagcagtcactcgtgcggtgggcgactccacagctccatgacatcgatgcattggacagaatggtcgatcctgcgctgaagggtctgtaccctgccaagtctctctcccggtttgccgacgtgctcgctttgtgtgtccaggtaggatttcaccatcctatgcagatgagctatgcaatactaattacctaatacatggaacaaaatgtctgaatcttatgaaacaaattcatgttacagcctgaaccagaattcaggccaccaatgtcagaggtggtgcaagcattggttcgtcttgtccagagggccaacatgacgaagagaatgctcgacggagatacttcgtcgcgccgaacagacgaccaagaacaagatttcatatgacaaaaaccacacccctagcttttcctgttacatctcaaattgtatttattttgttcgcctatcgcctattggagagaagaaggaaggagaaatagaaaagaaagtcagtttcatcagtacataatcacaggtgttgcttgatatatatattgtaggaccaggtgtgccattgtatcctgtctacagaacagtattctgaattcctgattgttcattaatgccatcatggtagtagattatttggttatatcatctgaaagatccaaagaagcatagtgctgctaagtatagcatcaggttcactggttgttaacaagaccagtagtacaactacaaagcaaatgcttcaatggaggttacaagagagactctcaatcatcaggtacaagctcatatatcatcacttgtcattt
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| CDS seq | atgggaagagcggatgcgccatggctgccgcttctgctcctgtgctcctcctgctgcttctgcatttggccccagaagcaaatcttggtcgctgcagacaccgaccctaatgatgttactgtcctcaatacgctcttcactagcctgaattctccggggcagctcaaaggttggcaggcaagtggtggagacccttgtggccaatcatggcagggtatcacgtgctcaggatcatcagttactgcaatcaaattaccaagcttggggctctccggtaatttggcgtacaatatgaataccatgggttcattgattgagatcgatatgagccaaaacaaccttggtggtggccaacagatacagtacaatcttcccactaataagcttgagaggctcaatctcgcaggaaaccagttcactggaaatttaccctactcgattttctcgatgtctaatcttaagtatttaaatctaaatcataaccaattgcaaggaaatataactgatgtattttccagcctctatagcttgacaacactatatctgcagaacaatcaatttactggttatatcaatgtccttgctaatctcccccttgatgatctgaatgttgcaaacaatcatttcactggctggattcctagtcaacttaagaagataaacaatctacaaactgacggaaattcttggagtaatggaccagcaccaccacctccaccgtattcagctccacctccaccaaaccgtccaaacagcccaggtcaaaacaatggtggttcaagttctggtggaagctctgggataggtggtggaggtgtagcaggcattatcatatcattgctggtagttggagcagtcgttgcattctttgtgataagaagaagaaaacgcagagcggcattggaagaacaTtttgaacagcaccagccattcacttcgttcccttcaaacgaagttaaagacatgaagcctattgaagagtctactacaatagatgtagagtctttgccatcccctgcttcatttagtctgaagccaCcccccaagattgaacgccacaagtctttcgatgatgatgatttatcaaacaagcctgtcttgaagaaaaccaatgtggcacctataaaggcaactgtttattcagttgcagatctacagatggcaacagaaagctttagcatggacaaccttgttggggaaggtacttttggacgtgtatacagggcacagtttactggtggaaaggttctggccgtgaagaaacttgatagtaccgtgatgccattccattcatctgatgattttgctgaactggtctcagacatttcaaaactgcatcatccgaatctcaatgagcttgtgggctattgcatggaacatgggcaacacttgcttgtttacgatttccacaggaatgggtcactccatgatctactccatctttcagacgaatacagcaagccacttagctggaactctcgtgtcaagatcgcactaggctctgcccgtgcactggaatatcttcatgaaatttgttctccatccatcatccataagaatttcaagtcatccaaccttctactggattcagaattcaatccacacctttcagatgctggacttgcaagctttatttctgatgcagaattccaggcagcgcaacagagtgctgggtgcactgccccagaggtggacatgactggtcagtacacactgaagagcgatgtctacagctttggagtagtcatgctagagcttttgacgggacgcagacctttcgatagcactagaccgaggtcagagcagtcactcgtgcggtgggcgactccacagctccatgacatcgatgcattggacagaatggtcgatcctgcgctgaagggtctgtaccctgccaagtctctctcccggtttgccgacgtgctcgctttgtgtgtccagcctgaaccagaattcaggccaccaatgtcagaggtggtgcaagcattggttcgtcttgtccagagggccaacatgacgaagagaatgctcgacggagatacttcgtcgcgccgaacagacgaccaagaacaagatttcatatga
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| Protein seq | MGRADAPWLPLLLLCSSCCFCIWPQKQILVAADTDPNDVTVLNTLFTSLNSPGQLKGWQASGGDPCGQSWQGITCSGSSVTAIKLPSLGLSGNLAYNMNTMGSLIEIDMSQNNLGGGQQIQYNLPTNKLERLNLAGNQFTGNLPYSIFSMSNLKYLNLNHNQLQGNITDVFSSLYSLTTLYLQNNQFTGYINVLANLPLDDLNVANNHFTGWIPSQLKKINNLQTDGNSWSNGPAPPPPPYSAPPPPNRPNSPGQNNGGSSSGGSSGIGGGGVAGIIISLLVVGAVVAFFVIRRRKRRAALEEHFEQHQPFTSFPSNEVKDMKPIEESTTIDVESLPSPASFSLKPPPKIERHKSFDDDDLSNKPVLKKTNVAPIKATVYSVADLQMATESFSMDNLVGEGTFGRVYRAQFTGGKVLAVKKLDSTVMPFHSSDDFAELVSDISKLHHPNLNELVGYCMEHGQHLLVYDFHRNGSLHDLLHLSDEYSKPLSWNSRVKIALGSARALEYLHEICSPSIIHKNFKSSNLLLDSEFNPHLSDAGLASFISDAEFQAAQQSAGCTAPEVDMTGQYTLKSDVYSFGVVMLELLTGRRPFDSTRPRSEQSLVRWATPQLHDIDALDRMVDPALKGLYPAKSLSRFADVLALCVQPEPEFRPPMSEVVQALVRLVQRANMTKRMLDGDTSSRRTDDQEQDFI |
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| Function | Protein STRUBBELIG-RECEPTOR FAMILY 7 [UniProtKB/Swiss-Prot:Q9LUL4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0005980 | OsNaBo_03g0005980.01 | Chr03 | 4359287 | 4365149 | + | NAM | ||
| CDS seq | atgggaagagcggatgcgccatggctgccgcttctgctcctgtgctcctcctgctgcttctgcatttggccccagaagcaaatcttggtcgctgcagacaccgaccctaatgatgttactgtcctcaatacgctcttcactagcctgaattctccggggcagctcaaaggttggcaggcaagtggtggagacccttgtggccaatcatggcagggtatcacgtgctcaggatcatcagttactgcaatcaaattaccaagcttggggctctccggtaatttggcgtacaatatgaataccatgggttcattgattgagatcgatatgagccaaaacaaccttggtggtggccaacagatacagtacaatcttcccactaataagcttgagaggctcaatctcgcaggaaaccagttcactggaaatttaccctactcgattttctcgatgtctaatcttaagtatttaaatctaaatcataaccaattgcaaggaaatataactgatgtattttccagcctctatagcttgacaacactatatctgcagaacaatcaatttactggttatatcaatgtccttgctaatctcccccttgatgatctgaatgttgcaaacaatcatttcactggctggattcctagtcaacttaagaagataaacaatctacaaactgacggaaattcttggagtaatggaccagcaccaccacctccaccgtattcagctccacctccaccaaaccgtccaaacagcccaggtcaaaacaatggtggttcaagttctggtggaagctctgggataggtggtggaggtgtagcaggcattatcatatcattgctggtagttggagcagtcgttgcattctttgtgataagaagaagaaaacgcagagcggcattggaagaacaTtttgaacagcaccagccattcacttcgttcccttcaaacgaagttaaagacatgaagcctattgaagagtctactacaatagatgtagagtctttgccatcccctgcttcatttagtctgaagccaCcccccaagattgaacgccacaagtctttcgatgatgatgatttatcaaacaagcctgtcttgaagaaaaccaatgtggcacctataaaggcaactgtttattcagttgcagatctacagatggcaacagaaagctttagcatggacaaccttgttggggaaggtacttttggacgtgtatacagggcacagtttactggtggaaaggttctggccgtgaagaaacttgatagtaccgtgatgccattccattcatctgatgattttgctgaactggtctcagacatttcaaaactgcatcatccgaatctcaatgagcttgtgggctattgcatggaacatgggcaacacttgcttgtttacgatttccacaggaatgggtcactccatgatctactccatctttcagacgaatacagcaagccacttagctggaactctcgtgtcaagatcgcactaggctctgcccgtgcactggaatatcttcatgaaatttgttctccatccatcatccataagaatttcaagtcatccaaccttctactggattcagaattcaatccacacctttcagatgctggacttgcaagctttatttctgatgcagaattccaggcagcgcaacagagtgctgggtgcactgccccagaggtggacatgactggtcagtacacactgaagagcgatgtctacagctttggagtagtcatgctagagcttttgacgggacgcagacctttcgatagcactagaccgaggtcagagcagtcactcgtgcggtgggcgactccacagctccatgacatcgatgcattggacagaatggtcgatcctgcgctgaagggtctgtaccctgccaagtctctctcccggtttgccgacgtgctcgctttgtgtgtccagcctgaaccagaattcaggccaccaatgtcagaggtggtgcaagcattggttcgtcttgtccagagggccaacatgacgaagagaatgctcgacggagatacttcgtcgcgccgaacagacgaccaagaacaagatttcatatga
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| Protein seq | MGRADAPWLPLLLLCSSCCFCIWPQKQILVAADTDPNDVTVLNTLFTSLNSPGQLKGWQASGGDPCGQSWQGITCSGSSVTAIKLPSLGLSGNLAYNMNTMGSLIEIDMSQNNLGGGQQIQYNLPTNKLERLNLAGNQFTGNLPYSIFSMSNLKYLNLNHNQLQGNITDVFSSLYSLTTLYLQNNQFTGYINVLANLPLDDLNVANNHFTGWIPSQLKKINNLQTDGNSWSNGPAPPPPPYSAPPPPNRPNSPGQNNGGSSSGGSSGIGGGGVAGIIISLLVVGAVVAFFVIRRRKRRAALEEHFEQHQPFTSFPSNEVKDMKPIEESTTIDVESLPSPASFSLKPPPKIERHKSFDDDDLSNKPVLKKTNVAPIKATVYSVADLQMATESFSMDNLVGEGTFGRVYRAQFTGGKVLAVKKLDSTVMPFHSSDDFAELVSDISKLHHPNLNELVGYCMEHGQHLLVYDFHRNGSLHDLLHLSDEYSKPLSWNSRVKIALGSARALEYLHEICSPSIIHKNFKSSNLLLDSEFNPHLSDAGLASFISDAEFQAAQQSAGCTAPEVDMTGQYTLKSDVYSFGVVMLELLTGRRPFDSTRPRSEQSLVRWATPQLHDIDALDRMVDPALKGLYPAKSLSRFADVLALCVQPEPEFRPPMSEVVQALVRLVQRANMTKRMLDGDTSSRRTDDQEQDFI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0005980 | OsNaBo_03g0005980.02 | Chr03 | 4359219 | 4364992 | + | IsoSeq | ||
| CDS seq | aagcccctcgatgaaagcgacaaccttgcaattgattggacctcatcgttcttgtccccgtcctggtgccagctgctgctccgctacttcccactgcgcgattcaagaacacggaggaaggttgaaactctgaaagcagcagcagatacaggaggagataagataagtaaattaattggaagaaagaaatcagtggggaggagg
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| Protein seq | KPLDESDNLAIDWTSSFLSPSWCQLLLRYFPLRDSRTRRKVETLKAAADTGGDKISKLIGRKKSVGRR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr03 | 4361382 | 4361659 | + | OsNaBo_03g0005980.02 | OsNaBo_03g0005980.02,OsNaBo_03g0005980.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.337915 | 32.940525 | 13.021628 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0183800 | RBH | 0.461255 | 0.426166 | 10.726740 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g08550 | RBH | 0.275547 | 0.282467 | 2.520467 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0183800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0006220 | RBH | 0.100864 | 48.522572 | 12.688750 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0006190 | RBH | 0.389570 | 20.270552 | 4.540877 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0006200 | RBH | 0.316311 | 38.509926 | 20.083950 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0006190 | RBH | 0.023899 | 1.593276 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0006150 | RBH | 1.649765 | 74.615784 | 22.989006 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0071800 | RBH | 13.533448 | 30.0097335 | 4.873345 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0006050 | RBH | 0.085594 | 3.973351 | 1.384681 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0072100 | RBH | 17.913687 | 5.3547165 | 32.65478 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0006110 | RBH | 0.419212 | 0.469877 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0006130 | RBH | 0.368927 | 32.180199 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0006120 | RBH | 1.181407 | 57.552883 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0006140 | RBH | 2.253066 | 4.259396 | 1.867413 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0006130 | RBH | 0.489415 | 41.572639 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G006160 | RBH | 0.110591 | 16.836325 | 8.641674 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0009390 | SBH | 0.171014 | 35.230808 | 22.967360 |
