Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0004590 | OGI:03009110 | 9/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:3462311-3465393 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcattcggttcctgaagtcaagagggagtgaaaaatatgtgagtcatagtagcttagtacttttcggagcagtaccatatttaagaagtcgctcgtTAAtTCctttccatcccaggtctccatgaacttcaaagcatttaacccacatgaccAactaaccatagaaattgagaatgtcagttagcaataattgttagttaaaagcgtattgatgatatttCacctgtCtttctgttgaggtacactctttgggcacagtggCcattttgcaacattTGggtcagtccaggaTgttggaacaggacgttctttcaccgtgtaatcaatatacttggccacgccattgatctgttatgtgttaaaattacttagaacatatgttattatagcatataggaactgttaTtgcgatggagcttactaggTttttaatatcttcgcttgcattgtaccattgtggctgcatctgcattgagtcaagaaTttgaatttcttggcatcttgcattaataacAattacataccaatgcGatttgtccctatttattggtaggaagaccttcaagaaatagcataagttaaagtagtttttggaaaggcataaaaataaatgatgacctgatttagtaccatatcatggaccatgtatctttgggcaaacgttgatctggattcaatgtatcttttacttggctttcctcttgtcTtaccaacggcacaccaaacctggacttgcgtttctttctcaaTtagagcagaaccgtactgcctggTgtggccttgttgattgtcgtttatgagTtctgtgtaagcttcaatgacctgttgcaaAATtaaaaaaattatagaaatgtatgggAaaggtagaaattattataacagataaaaataatcttaacgaggtgttcaaccattttgattttgatgaactatcaagcggcgttacaagtggcagtagatgtgcacgtgatagctctatgtcttgtatactggcaagaaccttagttttttctgactggaggatgtaattgattgttattttatctttcAatgtcaaACcAaggttcgctgatcctgAattggatatttgaattttgggctcgaatgTttttttgttatgtttgtagAatatgaaatcactttgagtttgatatgatggcttgactgtccttccgaactgacctcttagtctttctgcaatGgttttgttattgtcatctgtctcagttgcttcatccccagtgaCtatgaacggagcttcctctgttccattaccatcAatctctttggctaaatttgtctcatcctagagaagaagacataaaaaattgaatgctcgaacAatagttttgtaaattagttcagtacaactcaccgtattatcttcatgcatctattcagtaTggtaggcatcctttcAttgcctAaatcgaatgttcgattatcctcgactttgttgacatcagcttcttgTttgggtctaaatgcatcggcttgtatagggactgacttcctttttttggacagggtgtttttgatgtcctgtaagagTtgcagttcatttagctatAtattatgaacaaaagctatatattatgcagttcatttagccagtgctgctttatgcttacctcgatggctagtgtgtttttccggcatatttgTtccacggaaagtaaCttgtttgtcaatttgttctccatgAactgaatggacctttctaactgTtggagcatgtcaacaagtactttgatgtgacctgaatgctacaagaaagaagcagttggTtgtgacattatgtgtaggaagtaaTtttttgttgataatgtgcactcaaaaaaactgagctaagaatgtattacctctacggctgcaatttttgctggagatttgaTtttcttttcatggtcatcctcacactgatttagCTctctgtcatcatcTttttccttctcattgtcagtaccgtacggcatgtgatcattagcatatgcaaaagattgttgtgcatctatttcttcgttgtcagaaagtatGggatagtcattttctagttcctcaaaggcagtgtcttcctcaattctctgttcattgatataaaagtcattttctctgtcttcaaagccatgcgtgtcatgctcatacctctgttcatcattcaaaaagtctggatgttctatctgttcaataatctgtataacatatggcagcaattagcatatgatctactactgcaactagtatttctgtatgtgcagtaacttaccaatccccccccccctccccttcagctgttctgcagtcatatttgTttctcaacctgacattggctgcattccagaatgaaatcaggggaatctgacgtccattgtaattgatgttgcagaactcagagtttactgccttcacatgttcccaataccaacactgaatgcaatgtaaaaaataagcattttgagtacaataagaaaatAaattcagcATgtgaTaggtttgtatagtacctgcagtaatggaagattgccttctatattttttagtcctcccttgaattccttcaagcaatcgcagagatgttcccttgttaagcttgcccaattgatagtgtgaaTttttgttacatctctcagtaaaggtagatagctggagctcacatgggcctttgtagtaggacaaaggatgtacccaatggtgaaaaacatcAtccttctaatgaaatcttcctcgttgatttcagaTtgtttcgattcttctaaaattgcttcttgcaatgatatgagtgaaatattcttgctctcgccatccttgtacctagaataaatcttgtaatcctccgTgatcaatggcggcagtttGgaaatcaccggcccttcggctggaatatccAatatacactggacatcccaaagTgtgatcggtaaactcttgtcttggatcaatattgtttggcttttgacgtcgtaccgatcagctaaccaaatacaaaTtacccggTtgatgTtaatctctggcAttgctaacaagcctccaaatcCAaTtttttccatggccgctgtctggagtggattcaaacttctcaccat
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| CDS seq | atggtgagaagtttgaatccactccagacagcggccatggaaaaaAtTGgatttggaggcttgttagcaaTgccagagattaAcatcaAccgggtaAtttgtatttggttagctgatcggtacgacgtcaaaagccaaacaatattgatccaagacaagagtttaccgatcacActttgggatgtccagtgtatatTggatattccagccgaagggccggtgatttcCaaactgccgccattgatcAcggaggattacaagatttattctaggtacaaggatggcgagagcaagaatatttcactcatatcattgcaagaagcaattttagaagaatcgaaacaAtctgaaatcaacgaggaagatttcattagaaggaTgatgtttttcaccattgggtacatcctttgtcctactacaaaggcccatgtgagctccagctatctacctttactgagagatgtaacaaaaAttcacactatcaattgggcaagcttaacaagggaacatctctgcgattgcttgaaggaattcaagggaggactaaaaaatatagaaggcaatcttccattactgcagtgttggtattgggaacatgtgaaggcagtaaactctgagttctgcaacatcaattacaatggacgtcagattcccctgatttcattctggaatgcagccaatgatgagacaaatttagccaaagagatTgatggtaatggaacagaggaagctccgttcataGtcactggggatgaagcaactgagacagatgacaataacaaaacCattgcagaaagactaagaggtcagttcggaaggacagtcaagccatcatatcaaactcaaagtgatttcatatTctacaaacataacaaaaaaAcattcgagcccaaaattcaaatatccaatTcaggatcagcgaacctTgGTttgacatTgaaagataaaataacaatcaattacatcctccagtcagaaaaaactaaggttcttgccagtatacaagacatagagctatcacgtgcacatctactgccacttgtcattgaagcttacacagaActcataaacgacaatcaacaaggccacAccaggcagtacggttctgctctaAttgagaaagaaacgcaagtccaggtttggtgtgccgttggtaAgacaagaggaaagccaagtaaaagatacattgaatccagatcaacgtttgcccaaagatacatggtccatgatatggtcttcctaccaataaatagggacaaatCgcattggtatgtaatTgttattaatgcaagatgccaagaaattcaaAttcttgactcaatgcagatgcagccacaatggtacaatgcaagcgaagatattaaaaAcctaatcaatggcgtggccaagtatattgattacacggtgaaagaacgtcctgttccaacAtcctggactgaccCAaatgttgcaaaatgGccactgtgcccaaagagtgtacctcaacagaaaGacagtTggtcatgtgggttaaatgctttgaagttcatggagacctgggatggaaagGAaTTAacgagcgacttcttaaatatggtactgctccgaaaagtactaagctactatgactcacatatttttcactccctcttgacttcaggaaccgaatga
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| Protein seq | MVRSLNPLQTAAMEKIGFGGLLAMPEININRVICIWLADRYDVKSQTILIQDKSLPITLWDVQCILDIPAEGPVISKLPPLITEDYKIYSRYKDGESKNISLISLQEAILEESKQSEINEEDFIRRMMFFTIGYILCPTTKAHVSSSYLPLLRDVTKIHTINWASLTREHLCDCLKEFKGGLKNIEGNLPLLQCWYWEHVKAVNSEFCNINYNGRQIPLISFWNAANDETNLAKEIDGNGTEEAPFIVTGDEATETDDNNKTIAERLRGQFGRTVKPSYQTQSDFIFYKHNKKTFEPKIQISNSGSANLGLTLKDKITINYILQSEKTKVLASIQDIELSRAHLLPLVIEAYTELINDNQQGHTRQYGSALIEKETQVQVWCAVGKTRGKPSKRYIESRSTFAQRYMVHDMVFLPINRDKSHWYVIVINARCQEIQILDSMQMQPQWYNASEDIKNLINGVAKYIDYTVKERPVPTSWTDPNVAKWPLCPKSVPQQKDSWSCGLNALKFMETWDGKELTSDFLNMVLLRKVLSYYDSHIFHSLLTSGTE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0004590 | OsNaBo_03g0004590.01 | Chr03 | 3462311 | 3465393 | - | NAM | ||
| CDS seq | atggtgagaagtttgaatccactccagacagcggccatggaaaaaAtTGgatttggaggcttgttagcaaTgccagagattaAcatcaAccgggtaAtttgtatttggttagctgatcggtacgacgtcaaaagccaaacaatattgatccaagacaagagtttaccgatcacActttgggatgtccagtgtatatTggatattccagccgaagggccggtgatttcCaaactgccgccattgatcAcggaggattacaagatttattctaggtacaaggatggcgagagcaagaatatttcactcatatcattgcaagaagcaattttagaagaatcgaaacaAtctgaaatcaacgaggaagatttcattagaaggaTgatgtttttcaccattgggtacatcctttgtcctactacaaaggcccatgtgagctccagctatctacctttactgagagatgtaacaaaaAttcacactatcaattgggcaagcttaacaagggaacatctctgcgattgcttgaaggaattcaagggaggactaaaaaatatagaaggcaatcttccattactgcagtgttggtattgggaacatgtgaaggcagtaaactctgagttctgcaacatcaattacaatggacgtcagattcccctgatttcattctggaatgcagccaatgatgagacaaatttagccaaagagatTgatggtaatggaacagaggaagctccgttcataGtcactggggatgaagcaactgagacagatgacaataacaaaacCattgcagaaagactaagaggtcagttcggaaggacagtcaagccatcatatcaaactcaaagtgatttcatatTctacaaacataacaaaaaaAcattcgagcccaaaattcaaatatccaatTcaggatcagcgaacctTgGTttgacatTgaaagataaaataacaatcaattacatcctccagtcagaaaaaactaaggttcttgccagtatacaagacatagagctatcacgtgcacatctactgccacttgtcattgaagcttacacagaActcataaacgacaatcaacaaggccacAccaggcagtacggttctgctctaAttgagaaagaaacgcaagtccaggtttggtgtgccgttggtaAgacaagaggaaagccaagtaaaagatacattgaatccagatcaacgtttgcccaaagatacatggtccatgatatggtcttcctaccaataaatagggacaaatCgcattggtatgtaatTgttattaatgcaagatgccaagaaattcaaAttcttgactcaatgcagatgcagccacaatggtacaatgcaagcgaagatattaaaaAcctaatcaatggcgtggccaagtatattgattacacggtgaaagaacgtcctgttccaacAtcctggactgaccCAaatgttgcaaaatgGccactgtgcccaaagagtgtacctcaacagaaaGacagtTggtcatgtgggttaaatgctttgaagttcatggagacctgggatggaaagGAaTTAacgagcgacttcttaaatatggtactgctccgaaaagtactaagctactatgactcacatatttttcactccctcttgacttcaggaaccgaatga
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| Protein seq | MVRSLNPLQTAAMEKIGFGGLLAMPEININRVICIWLADRYDVKSQTILIQDKSLPITLWDVQCILDIPAEGPVISKLPPLITEDYKIYSRYKDGESKNISLISLQEAILEESKQSEINEEDFIRRMMFFTIGYILCPTTKAHVSSSYLPLLRDVTKIHTINWASLTREHLCDCLKEFKGGLKNIEGNLPLLQCWYWEHVKAVNSEFCNINYNGRQIPLISFWNAANDETNLAKEIDGNGTEEAPFIVTGDEATETDDNNKTIAERLRGQFGRTVKPSYQTQSDFIFYKHNKKTFEPKIQISNSGSANLGLTLKDKITINYILQSEKTKVLASIQDIELSRAHLLPLVIEAYTELINDNQQGHTRQYGSALIEKETQVQVWCAVGKTRGKPSKRYIESRSTFAQRYMVHDMVFLPINRDKSHWYVIVINARCQEIQILDSMQMQPQWYNASEDIKNLINGVAKYIDYTVKERPVPTSWTDPNVAKWPLCPKSVPQQKDSWSCGLNALKFMETWDGKELTSDFLNMVLLRKVLSYYDSHIFHSLLTSGTE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g21310 | SBH | 0.0 | 0.000000 | 0.064895 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0004840 | RBH | 0.190471 | 1.022622 | 2.187201 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0004770 | RBH | 0.000000 | 0.000000 | 0.126669 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0004820 | RBH | 0.871103 | 0.777041 | 4.969482 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0004750 | RBH | 0.000000 | 0.050806 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0026620 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0026400 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0055500 | SBH | 0.0374105 | 0 | 0.076619 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0026650 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0026680 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0004730 | RBH | 0.946739 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0026520 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0026470 | SBH | 0.707796 | 2.607033 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G004760 | RBH | 0.000000 | 0.558705 | 0.622043 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
