Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0004490 | OGI:03008960 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:3405678-3409289 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gttccggagcgccggccgccgccgccgccgcgacgacctcactttctgctatcaacctgtagcaaaccaggagcagcgtcggcctcctcctccgcctccgagctgtgtcgttctccggattgagccggggtaagcgactagtacttcgccttttccctcccaaattgccgtgccatctccgcctcctcttccattctttccatggttggtctggctcgaattggtttgcttatttggttctcgtaatcgagagtagccgtggaagctgaggccgaggtgcatttgtggttttcttggcgcggataaaggctgggggtggggagatgatgagcccgtgcgattgcttcctccatgccaccgcgccgccgctgaatccgccgtcgagtctcgcggctgcggcgccgggagctcgctggagggatagcaacctctcgttccagagcagcgcagtgtctgcgccggcgagaaacgtcgagacttCccccaatttggtggttccatgtacggttcatacgcaggctgctgaaaggaagaagagtgggaggtgggtgaagtatggcgggtcgattccggcgatgctggaggcgcttgagcgtaatgaggatatcggggaggcgctccggccatggagggacacgatgagcaaccgggagaggacaatcattctcaaggagcagaaggattggaggagagcggttgaaattttcaactggtttcgcaggaggaggcgccatgaggtcaatgtgatacactacaatgttgttctctgcgcggttgggagggcgaggagatgggaccttgttgctaggctgtggcatgagatgcattccggtggtgttgcgccggataattcgacgtatggcacgcttattgatgtgcactgcaaagggggcagagagaggatggcattgctttggcttggcgacatgatcaagcgtgggttgctgcctgatgagattactatgagtattgtgcttcaggtacacaagaaggctggggagtatgagaaagccgagcttttcttcaagagatggtccttggagtcagatgtaaagatgaaagggcatccttgctatagtttgtatacttacaacaccttgatcgatacttatgggaaggctgggcaacttgagaaagtatcagatacattcaatcagatgttaagagaaggtgtttcaccaaatgttgttacatttaacacaatgattcatgtttggggtaaacaccgtagaatggagcaagtagcttctctgatgagaacgatggaggagtttcagtgccttccggacactaggacgtataatattctgatctcgctatacagagaaatcaatgatattgatgttgcggagtactatttcaggaagatgaaagctgaaaatctgcttccagatgttgtgagctgccgcactctcttgtatggatactctatcaagggcatggtcactgaagcacaagctcttcttaaagaaatgtatgagaggaacatggtgattgatgaatacacacaatcagctgtgacgaggatgtatgtcgatgctgggatgcttgagcaagcgtggcgttggtttgagaagttcaattatcagttaaactctgagtgcttttctgcaaatattgatgcatttggggagagagggcatatactccttgcagagaaggcttttatgtgctgcataaaaaggaagatgctaagcacttgtgtttgtaatgttatgatcaaagcatatggtttagtagagaagcttgacgaggcttgtgagattgctgatggcatggagaggtatggcattttgcctgattacttgacttacagttctctgattcatctaatgtcaaccgctaaattgccagagaaagctctttactatttgagaaagatgcaggcagcaaaattgctgattgattgtgttccttattctgtggtaatcagttgctttgctaagaatggcaatttacacatggtcgactgcctgtttagagaaatgatcacttcagggatccaagctgatacttatgtttactctatcttaattgatgcatatgctgaagttggagatgtccagaaagctgaagcatattttggtttgttgaaaaaggctggtttatgtgagagtgctacaatatataattctttgatcaagctctacacaaaggtagtgtatcttgcagaggcacagaaaacgtacaagcttctcaaatcattaaatgcagacaccaacctttatgcgtcaaactgcatgattgacctctatagtgaccattgtatggtgaaggaagcacgtgagatttttgagaatttgaaggttacaggaaaggcaaatgaattttcacatgcaatgatggtgtgcttgtacaagaaaattgctcgctttgatgaagcccacaggatttctaagaaaatgcaagcttcaggatttctaactcaggcattaagctacaactctgtgatacaaatgtatgtgtctggtggaagaatggaagatgcccttaaaatatttcagaagatgttggcatcgaacacaccaccaaatgatgcaacattcaaggcactaaagattattttagtgaaacgaggagtttcaaataatgatattagaaggttagaattgctcagaaaaaatagaattcatgattgcttgcgccactggtacaggatgctatgcatggcggtaagatcaggtggtagttcttctcgacgtattagtgataattcagctctgaggacgcatatttttgacattggcaattccaagagtggcaaaagaaatacaagaaagcatgtaacttcataaatatttcgagtctaactggtttaacatcttcgatgttgacacaacacggtggtgatccatctactaaacagttgatggaaagcaccgtgttatcttcaaaagaaaaccccatgaccactgtttgactggtgctctaagaatgtggtgaaatttccaatggatcaggctagattaccgcagggatgcaggtcagttttgttgtatattccccaatctgtatgtaccacaatacatgggttcacacttttccaacatcagggtttaatgttattaactggaacatctatagattatctaaatacagcaaagattcagtaattttgacaatctccaacacagcgtatttcatttctaactgtattactaacctggaaatattttttttcctgtaatggcaggtctcttttgcgttttgttaatatgatgcccatagtagtttttctattcatacttcatattgcttgtaaatgttattattctatttagcttcttgaggtgttcaacctagtactaatagatatccacagtactcaatagttcattaactctgccacatagatatccacagagattgagtactgtggtttagtcctaaacaagatagtattattctttagttctgccatgctttaactgaatgctgtcagtatatgttagatttgcaaccgaaagaacatgaaaactgatcaattcgattgcaaagtgcatctgcattctagtttttggacaaacatgtgtttcaatggttttattagagaagacattctaacttaggcgtgctttgagttctcaggtgtgcaaTtttgaagcaagctag
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| CDS seq | atgatgagcccgtgcgattgcttcctccatgccaccgcgccgccgctgaatccgccgtcgagtctcgcggctgcggcgccgggagctcgctggagggatagcaacctctcgttccagagcagcgcagtgtctgcgccggcgagaaacgtcgagacttCccccaatttggtggttccatgtacggttcatacgcaggctgctgaaaggaagaagagtgggaggtgggtgaagtatggcgggtcgattccggcgatgctggaggcgcttgagcgtaatgaggatatcggggaggcgctccggccatggagggacacgatgagcaaccgggagaggacaatcattctcaaggagcagaaggattggaggagagcggttgaaattttcaactggtttcgcaggaggaggcgccatgaggtcaatgtgatacactacaatgttgttctctgcgcggttgggagggcgaggagatgggaccttgttgctaggctgtggcatgagatgcattccggtggtgttgcgccggataattcgacgtatggcacgcttattgatgtgcactgcaaagggggcagagagaggatggcattgctttggcttggcgacatgatcaagcgtgggttgctgcctgatgagattactatgagtattgtacacaagaaggctggggagtatgagaaagccgagcttttcttcaagagatggaagatgaaagctgaaaatctgcttccagatgttgtgagctgccgcactctcttgtatggatactctatcaagggcatggtcactgaagcacaagctcttcttaaagaaatgtatgagaggaacatggtgtgcaaTtttgaagcaagctag
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| Protein seq | MMSPCDCFLHATAPPLNPPSSLAAAAPGARWRDSNLSFQSSAVSAPARNVETSPNLVVPCTVHTQAAERKKSGRWVKYGGSIPAMLEALERNEDIGEALRPWRDTMSNRERTIILKEQKDWRRAVEIFNWFRRRRRHEVNVIHYNVVLCAVGRARRWDLVARLWHEMHSGGVAPDNSTYGTLIDVHCKGGRERMALLWLGDMIKRGLLPDEITMSIVHKKAGEYEKAELFFKRWKMKAENLLPDVVSCRTLLYGYSIKGMVTEAQALLKEMYERNMVCNFEAS |
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| Function | Pentatricopeptide repeat-containing protein At3g23020 [UniProtKB/Swiss-Prot:Q9LS88] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0004490 | OsNaBo_03g0004490.01 | Chr03 | 3405678 | 3409289 | + | NAM | ||
| CDS seq | atgatgagcccgtgcgattgcttcctccatgccaccgcgccgccgctgaatccgccgtcgagtctcgcggctgcggcgccgggagctcgctggagggatagcaacctctcgttccagagcagcgcagtgtctgcgccggcgagaaacgtcgagacttCccccaatttggtggttccatgtacggttcatacgcaggctgctgaaaggaagaagagtgggaggtgggtgaagtatggcgggtcgattccggcgatgctggaggcgcttgagcgtaatgaggatatcggggaggcgctccggccatggagggacacgatgagcaaccgggagaggacaatcattctcaaggagcagaaggattggaggagagcggttgaaattttcaactggtttcgcaggaggaggcgccatgaggtcaatgtgatacactacaatgttgttctctgcgcggttgggagggcgaggagatgggaccttgttgctaggctgtggcatgagatgcattccggtggtgttgcgccggataattcgacgtatggcacgcttattgatgtgcactgcaaagggggcagagagaggatggcattgctttggcttggcgacatgatcaagcgtgggttgctgcctgatgagattactatgagtattgtacacaagaaggctggggagtatgagaaagccgagcttttcttcaagagatggaagatgaaagctgaaaatctgcttccagatgttgtgagctgccgcactctcttgtatggatactctatcaagggcatggtcactgaagcacaagctcttcttaaagaaatgtatgagaggaacatggtgtgcaaTtttgaagcaagctag
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| Protein seq | MMSPCDCFLHATAPPLNPPSSLAAAAPGARWRDSNLSFQSSAVSAPARNVETSPNLVVPCTVHTQAAERKKSGRWVKYGGSIPAMLEALERNEDIGEALRPWRDTMSNRERTIILKEQKDWRRAVEIFNWFRRRRRHEVNVIHYNVVLCAVGRARRWDLVARLWHEMHSGGVAPDNSTYGTLIDVHCKGGRERMALLWLGDMIKRGLLPDEITMSIVHKKAGEYEKAELFFKRWKMKAENLLPDVVSCRTLLYGYSIKGMVTEAQALLKEMYERNMVCNFEAS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 6.028546 | 0.891842 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0162900 | RBH | 2.076148 | 0.708022 | 0.761847 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g06710 | RBH | 1.403999 | 0.476204 | 0.196114 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0162900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0004730 | RBH | 0.000000 | 16.509851 | 1.847264 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0004660 | RBH | 0.080983 | 0.000000 | 0.776345 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0004700 | RBH | 0.858340 | 3.033279 | 2.224436 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0004660 | RBH | 0.000000 | 0.099424 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0004710 | RBH | 3.859049 | 3.282717 | 5.734246 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0054400 | RBH | 9.66335 | 8.4460905 | 12.7768285 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0004590 | RBH | 0.345926 | 0.0 | 0.410138 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0102500 | SBH | 3.148426 | 1.314338 | 2.743484 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0004680 | RBH | 0.192326 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0004660 | RBH | 0.168271 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0004620 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0004680 | RBH | 0.440100 | 0.226712 | 0.436521 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0004670 | RBH | 0.253083 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G004650 | RBH | 0.0 | 0.953979 | 1.327887 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0011260 | RBH | 6.046356 | 10.414731 | 4.936269 |
