Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0003160 | OGI:03006330 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:2374843-2379712 | ||||||||
| Gene Symbol | OsRFPH2-9 | ||||||||||
| DNA seq | tcgcgttcatcttctgcatgttataatcctccattctttttgctcttcctcgcactcgcagcgccaccaacgaaaacccaaggcaacgcaccacgctgcacgcgtccgtggtcgccgcgaaacttgcgccgcgatggggaggccgattcacccccaaatcctgccatcctgatacagtttgatttctccgtcgagcagcaacagcagcagcgaggattgggtgtgcgaaaaggagtcgcctttgagggatcgtgagcaatggcgccggcgtgggatcgcgccaagcacgcgctcgccaccaggctctgcattcgcttcccggcgcggcagagggccgtggaggatgcaccggcggaagacgaggcgcctccgccgcctccaccgcctgcggcggcggcggcgcgtgctgtgccggaggagaagttgaagtcgccatcggtgtccgtgcggcggctttcgagctctgggagctGgggcaagaaggtcaggtttatctttctccctgggagagaatctattctaaaccactgagtttgatcgacttcaacgatttgccatcgacattgtctccttctataatataccgacgactttattaattgttctataatatgccattgggctgggcattcttttcaaaaatacccaaaatacccttagagacataccaaattaacaattgatttatctcattagaagtttcaaaaaaATtaaaaaaaatttagtggcctcgttacacaacatggaagtttctatacatgtttcaagttttttctggtatatttagattttagaaaataataTttttatgtggtatatgagagaaaatttgtttatacgagagataatagcacaaaaatatcttatgtagagtatgaaagatgatttatattaaaaacatcaataaaatgtattttatatagcatataacaaatgagttatatatttttttacaaaaaatataaatgtaaaaaacttgaaacttctatacaaacttccatgttgtgtaagtaggccatataattttttaaatttttttttgaaatttctaataggataaattaattggtaaccttgtatgtacataagggtatttcaggtatttttaaaaatagtgtccagcccaatggcgtattgtagaacaattgataaagtcactggtatattatagaaggaaacaatgtcgatgacaaatcgttgaactcgaacaaactcagtggtatagaatagattctctcttctggtaatgttagattgcgattgctcttgatttatggtgtgcagatgtgagaaaaagtgtcggctttaattaatgcatattagatggttcttttttgttgtcaaataaaacatcgcgaatttcggttccatgttggtaaaatatcttcgtaggggtatgacaagttcattttttgtcctaaaactattgtggatcacaatagcgagagagaacattctttttctgggtgtcatctcttacctgaaagggtaaaatatctctttattctccactcctttctagatatgtttagtttccatttgaaacttgcatatgggcatcgattttatccgatttgtctaaaaatcatgtagttgcgtaaattctctttgagaacatttttttgatAaacctgtaaatttgcaatatatgtaaatatggccacctctttcaaatcgttcatgttaatactgttccaaatgctgtatgtatattcttcattgTtttgaagttttacttgaatttattggcacaacgatctttggcataaatggcttcagaccagtgcccgaacaaagagaaagtgttgcttcagcccattgcagaccagaacatgcattttgattggttggtggatcatcttatctgacttggtcccagtagttgttgaaaatacaacttgatttgtcacattgactaatgaagaatatttactttttgatgacggtgcacatgtttttagaacaacgatacacatgatgaaatagccttcatttttttttgaaagatcaccccccccccccGGggggggggggggttatattataatctggtgttgtgtcatctatgctgcagctgcaactgaccattcagtattttattactcccaagctgcacatgcatacacatttcagtgtgtgcatatttttccaattcggaaactacctgtgtctatccaaattccaaatcattccatccaaaatggttcatcaatcatgaaaacAAattgatcatactacacttgttataggaaggttggattgtaagccatccctgcgctattgtcaaaacgtgtaaattcttgttcttaagctttgtccatgacaagtttatcgccatccttttagtcatttgctccctccttttgacatgttAaattttcttttccttggatagtggttcaaagccacttatcttttctcattaagctgtatcaagtatctactcttcacctttacttgtgtgctcctgagagattttacattcgtaaatagtacagtcatatgacacacagattcctttatgtttctttcgtatgacacataaataggatagtctttatgtatattcaggcacaatttatagttgataatggcagaagtttatgttaccatgaaagctctgatggtagcaatgctaacttttttttttgttgtttactctcttcatttcagaaggtatgtgccatttgccttggtggcatacggacaggaggacaggccttgttcactgctgaatgctcccacgaattccattttcattgcatctcctcaaatgtcaaccatggcaattacgtctgcccggtatgtcgtgctgagtggaaagaacttcccttccaaggaactcaacctgcagacactgcttatggacgagctagagtaagccctgtaaattggccccaggatgaggggcagatgtctgttgtccgcaggctttcccgcggatatagtggaaaccttcaacagcaacttgctgtcttccgtactccggaggcaagcattttcaatgatgatgagaacattgatcctcagtctgaaacagttgatgatcataatgcagttactaaatcagttgagatcaagacatattcagaatttccagccatacaaaaatcagaaagacggaaggtctttgctatcttaatacatctgaaggctccaaagtccttggactcggtgagctcccgtgcacctcttgaccttgtgactgtgcttgatgtcagtggcagcatgtcggggataaaactttcacttcttaagcgtgccatgagttttgtcatccaaacacttggacccaatgaccgcctgtctgttgtagccttttcatctacagcacagaggctctttccacttcgccgaatgaccttaactggtcggcagcaagccttgcaagccattagttcccttgtcgcaagtggtggcacaaacattgctgatgcgctaaagaaaggtgctaaggtggtcaaggatcgtcggcggaagaatcctgttagcagcataattcttctttctgatggtcaagacacccattcatttctatctggtgaggctgatataaactacagtatacttgttcccccttcaatccttcctgggacaagtcatcatgtgcaaatccacacctttggttttggtacagaccatgattcggctgccatgcatgctattgctgagacatctaatggcacattttcatttattgatgctgaaggctcaatccaagatgcatttgctcaatgtatgggtggcctccttagcgttgtagttaaggatatgaggctgtgcatcgagtgtatagatgaaggcgtgtctcttacctccatcaagtcaggcagctatgcaagtcaagtagctggaaatgaacgcagtggattggttgatattggtgacctctatgcagatgaagagaggggatttctggtcactctacatgtcccagccgcacatggacagactgtgctgatcaaaccaaaatgcacatacctagatgcaataactatggaaaatgtccagctagacggtgaagaagtgattattcagcgtcctgcatattgtgttgactgtacaatgtcacctgaggttgagcgtgaatggcaccgtgttcaagccacagaggacatgtctgctgctcgatctgcggctgaggatggctctttctctcaggccgtgtcaatccttgaaagccgtaggagaatactggagttacatgcagcacactcttcagacagtcagttcttggcattaatcaaagagctaagggagatgcaggatagggtggagagccggcagaggtacgaggaatcaggcagggcttacatgctgtcaggcctgagctcacactcatggcaaagagcaactgcacgtggcgactcgacagagctcacaacccttattaatacttaccagacaccatccatggttgatatgctacagcgctcgcagactatcctgccctctgttgtcgaaatgctgaaccgttcttcaactgttgctacttcaaagtccttctctagctacctcccaacctcccgccatattgcttgatcataatgtagttctagcaataaccagccaagtgttagggaaatgaagatatccaattctttagtttgttttctgcagatctttttccattatttatagtgggcatgggattagattcattataaatgtttgggtatatactctagTttggtgtacatgggtaaactttgaaagggaatgataaacagcatagctgaaacaggtgaaaggaatgctgacatttcatttgtttctcatcatcattttatattaattctcattttgtacataaaattctcccttgggttgttccaggatgcttgtaagctcttggctgcattcacacttt
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| CDS seq | atggcgccggcgtgggatcgcgccaagcacgcgctcgccaccaggctctgcattcgcttcccggcgcggcagagggccgtggaggatgcaccggcggaagacgaggcgcctccgccgcctccaccgcctgcggcggcggcggcgcgtgctgtgccggaggagaagttgaagtcgccatcggtgtccaaggtatgtgccatttgccttggtggcatacggacaggaggacaggccttgttcactgctgaatgctcccacgaattccattttcattgcatctcctcaaatgtcaaccatggcaattacgtctgcccggtatgtcgtgctgagtggaaagaacttcccttccaaggaactcaacctgcagacactgcttatggacgagctagagtaagccctgtaaattggccccaggatgaggggcagatgtctgttgtccgcaggctttcccgcggatatagtggaaaccttcaacagcaacttgctgtcttccgtactccggaggcaagcattttcaatgatgatgagaacattgatcctcagtctgaaacagttgatgatcataatgcagttactaaatcagttgagatcaagacatattcagaatttccagccatacaaaaatcagaaagacggaaggtctttgctatcttaatacatctgaaggctccaaagtccttggactcggtgagctcccgtgcacctcttgaccttgtgactgtgcttgatgtcagtggcagcatgtcggggataaaactttcacttcttaagcgtgccatgagttttgtcatccaaacacttggacccaatgaccgcctgtctgttgtagccttttcatctacagcacagaggctctttccacttcgccgaatgaccttaactggtcggcagcaagccttgcaagccattagttcccttgtcgcaagtggtggcacaaacattgctgatgcgctaaagaaaggtgctaaggtggtcaaggatcgtcggcggaagaatcctgttagcagcataattcttctttctgatggtcaagacacccattcatttctatctggtgaggctgatataaactacagtatacttgttcccccttcaatccttcctgggacaagtcatcatgtgcaaatccacacctttggttttggtacagaccatgattcggctgccatgcatgctattgctgagacatctaatggcacattttcatttattgatgctgaaggctcaatccaagatgcatttgctcaatgtatgggtggcctccttagcgttgtagttaaggatatgaggctgtgcatcgagtgtatagatgaaggcgtgtctcttacctccatcaagtcaggcagctatgcaagtcaagtagctggaaatgaacgcagtggattggttgatattggtgacctctatgcagatgaagagaggggatttctggtcactctacatgtcccagccgcacatggacagactgtgctgatcaaaccaaaatgcacatacctagatgcaataactatggaaaatgtccagctagacggtgaagaagtgattattcagcgtcctgcatattgtgttgactgtacaatgtcacctgaggttgagcgtgaatggcaccgtgttcaagccacagaggacatgtctgctgctcgatctgcggctgaggatggctctttctctcaggccgtgtcaatccttgaaagccgtaggagaatactggagttacatgcagcacactcttcagacagtcagttcttggcattaatcaaagagctaagggagatgcaggatagggtggagagccggcagaggtacgaggaatcaggcagggcttacatgctgtcaggcctgagctcacactcatggcaaagagcaactgcacgtggcgactcgacagagctcacaacccttattaatacttaccagacaccatccatggttgatatgctacagcgctcgcagactatcctgccctctgttgtcgaaatgctgaaccgttcttcaactgttgctacttcaaagtccttctctagctacctcccaacctcccgccatattgcttga
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| Protein seq | MAPAWDRAKHALATRLCIRFPARQRAVEDAPAEDEAPPPPPPPAAAAARAVPEEKLKSPSVSKVCAICLGGIRTGGQALFTAECSHEFHFHCISSNVNHGNYVCPVCRAEWKELPFQGTQPADTAYGRARVSPVNWPQDEGQMSVVRRLSRGYSGNLQQQLAVFRTPEASIFNDDENIDPQSETVDDHNAVTKSVEIKTYSEFPAIQKSERRKVFAILIHLKAPKSLDSVSSRAPLDLVTVLDVSGSMSGIKLSLLKRAMSFVIQTLGPNDRLSVVAFSSTAQRLFPLRRMTLTGRQQALQAISSLVASGGTNIADALKKGAKVVKDRRRKNPVSSIILLSDGQDTHSFLSGEADINYSILVPPSILPGTSHHVQIHTFGFGTDHDSAAMHAIAETSNGTFSFIDAEGSIQDAFAQCMGGLLSVVVKDMRLCIECIDEGVSLTSIKSGSYASQVAGNERSGLVDIGDLYADEERGFLVTLHVPAAHGQTVLIKPKCTYLDAITMENVQLDGEEVIIQRPAYCVDCTMSPEVEREWHRVQATEDMSAARSAAEDGSFSQAVSILESRRRILELHAAHSSDSQFLALIKELREMQDRVESRQRYEESGRAYMLSGLSSHSWQRATARGDSTELTTLINTYQTPSMVDMLQRSQTILPSVVEMLNRSSTVATSKSFSSYLPTSRHIA |
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| Function | E3 ubiquitin-protein ligase WAV3 [UniProtKB/Swiss-Prot:Q9LTA6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0003160 | OsNaBo_03g0003160.01 | Chr03 | 2375101 | 2379712 | + | NAM | ||
| CDS seq | atggcgccggcgtgggatcgcgccaagcacgcgctcgccaccaggctctgcattcgcttcccggcgcggcagagggccgtggaggatgcaccggcggaagacgaggcgcctccgccgcctccaccgcctgcggcggcggcggcgcgtgctgtgccggaggagaagttgaagtcgccatcggtgtccaaggtatgtgccatttgccttggtggcatacggacaggaggacaggccttgttcactgctgaatgctcccacgaattccattttcattgcatctcctcaaatgtcaaccatggcaattacgtctgcccggtatgtcgtgctgagtggaaagaacttcccttccaaggaactcaacctgcagacactgcttatggacgagctagagtaagccctgtaaattggccccaggatgaggggcagatgtctgttgtccgcaggctttcccgcggatatagtggaaaccttcaacagcaacttgctgtcttccgtactccggaggcaagcattttcaatgatgatgagaacattgatcctcagtctgaaacagttgatgatcataatgcagttactaaatcagttgagatcaagacatattcagaatttccagccatacaaaaatcagaaagacggaaggtctttgctatcttaatacatctgaaggctccaaagtccttggactcggtgagctcccgtgcacctcttgaccttgtgactgtgcttgatgtcagtggcagcatgtcggggataaaactttcacttcttaagcgtgccatgagttttgtcatccaaacacttggacccaatgaccgcctgtctgttgtagccttttcatctacagcacagaggctctttccacttcgccgaatgaccttaactggtcggcagcaagccttgcaagccattagttcccttgtcgcaagtggtggcacaaacattgctgatgcgctaaagaaaggtgctaaggtggtcaaggatcgtcggcggaagaatcctgttagcagcataattcttctttctgatggtcaagacacccattcatttctatctggtgaggctgatataaactacagtatacttgttcccccttcaatccttcctgggacaagtcatcatgtgcaaatccacacctttggttttggtacagaccatgattcggctgccatgcatgctattgctgagacatctaatggcacattttcatttattgatgctgaaggctcaatccaagatgcatttgctcaatgtatgggtggcctccttagcgttgtagttaaggatatgaggctgtgcatcgagtgtatagatgaaggcgtgtctcttacctccatcaagtcaggcagctatgcaagtcaagtagctggaaatgaacgcagtggattggttgatattggtgacctctatgcagatgaagagaggggatttctggtcactctacatgtcccagccgcacatggacagactgtgctgatcaaaccaaaatgcacatacctagatgcaataactatggaaaatgtccagctagacggtgaagaagtgattattcagcgtcctgcatattgtgttgactgtacaatgtcacctgaggttgagcgtgaatggcaccgtgttcaagccacagaggacatgtctgctgctcgatctgcggctgaggatggctctttctctcaggccgtgtcaatccttgaaagccgtaggagaatactggagttacatgcagcacactcttcagacagtcagttcttggcattaatcaaagagctaagggagatgcaggatagggtggagagccggcagaggtacgaggaatcaggcagggcttacatgctgtcaggcctgagctcacactcatggcaaagagcaactgcacgtggcgactcgacagagctcacaacccttattaatacttaccagacaccatccatggttgatatgctacagcgctcgcagactatcctgccctctgttgtcgaaatgctgaaccgttcttcaactgttgctacttcaaagtccttctctagctacctcccaacctcccgccatattgcttga
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| Protein seq | MAPAWDRAKHALATRLCIRFPARQRAVEDAPAEDEAPPPPPPPAAAAARAVPEEKLKSPSVSKVCAICLGGIRTGGQALFTAECSHEFHFHCISSNVNHGNYVCPVCRAEWKELPFQGTQPADTAYGRARVSPVNWPQDEGQMSVVRRLSRGYSGNLQQQLAVFRTPEASIFNDDENIDPQSETVDDHNAVTKSVEIKTYSEFPAIQKSERRKVFAILIHLKAPKSLDSVSSRAPLDLVTVLDVSGSMSGIKLSLLKRAMSFVIQTLGPNDRLSVVAFSSTAQRLFPLRRMTLTGRQQALQAISSLVASGGTNIADALKKGAKVVKDRRRKNPVSSIILLSDGQDTHSFLSGEADINYSILVPPSILPGTSHHVQIHTFGFGTDHDSAAMHAIAETSNGTFSFIDAEGSIQDAFAQCMGGLLSVVVKDMRLCIECIDEGVSLTSIKSGSYASQVAGNERSGLVDIGDLYADEERGFLVTLHVPAAHGQTVLIKPKCTYLDAITMENVQLDGEEVIIQRPAYCVDCTMSPEVEREWHRVQATEDMSAARSAAEDGSFSQAVSILESRRRILELHAAHSSDSQFLALIKELREMQDRVESRQRYEESGRAYMLSGLSSHSWQRATARGDSTELTTLINTYQTPSMVDMLQRSQTILPSVVEMLNRSSTVATSKSFSSYLPTSRHIA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0003160 | OsNaBo_03g0003160.02 | Chr03 | 2374843 | 2379619 | + | IsoSeq | ||
| CDS seq | tcgcgttcatcttctgcatgttataatcctccattctttttgctcttcctcgcactcgcagcgccaccaacgaaaacccaaggcaacgcaccacgctgcacgcgtccgtggtcgccgcgaaacttgcgccgcgatggggaggccgattcacccccaaatcctgccatcctgatacagtttgatttctccgtcgagcagcaacagcagcagcgaggattgggtgtgcgaaaaggagtcgcctttgaggga
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| Protein seq | SRSSSACYNPPFFLLFLALAAPPTKTQGNAPRCTRPWSPRNLRRDGEADSPPNPAILIQFDFSVEQQQQQRGLGVRKGVAFEG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr03 | 2375286 | 2377516 | + | OsNaBo_03g0003160.02 | OsNaBo_03g0003160.02,OsNaBo_03g0003160.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 3.937262 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0142500 | RBH | 0.451234 | 0.278207 | 0.638736 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g04890 | RBH | 0.304807 | 0.186909 | 0.164239 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0142500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0003290 | RBH | 0.0 | 4.152110 | 1.379802 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0003220 | RBH | 0.0 | 0.000000 | 1.499232 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0003270 | RBH | 0.0 | 0.0 | 2.787703 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0003210 | RBH | 0.054377 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0003310 | RBH | 0.0 | 1.375739 | 11.229699 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0037000 | RBH | 0.154832 | 2.2285135 | 0.405532 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0003200 | RBH | 0.0 | 0.074619 | 0.773553 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0038200 | RBH | 0.288836 | 3.096091 | 0.460646 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0003310 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0003280 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0003230 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0003310 | RBH | 0.0 | 0.000000 | 0.501202 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0003290 | RBH | 0.0 | 2.616625 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G003260 | RBH | 0.0 | 0.000000 | 0.863390 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0013570 | RBH | 0.0 | 0.000000 | 0.619667 |
