Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0039720 | OGI:02100620 | 14/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:37630346-37630897 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaGggaggtgtgttgtggtGggcggtggcGgtggcggtggagaaatcgtgcagcgtgggcaggtcgacctccccgcaCctccggcagcggccggggagagggaGgaataatgtactagtcccgacggtggcgcggcaggaggggcaggtggcgtgggtccccagccacgtatcgatgcaggagacgtggaaggcgtggccgcagtgcggcagcaagcgtagctcCTcccccccggcgaactcagccaggcagatggcgcactccgcctgctgctgctgcttgagtgcgaaggacacggtggggagcgcgtcgatggcTttcttcttcaggccTttgggtgcaGgggatgtagcagccggTgtagtagtagtggtggtggtggtggtagcggcgcctcggcggcggcaggcacagcgggccacgaggaccaggccggcgacgcagatgagggcgcagaggagggaggccaggatgaccaccatgtccgagtcgatggagatggccgcCGccggtGttgccggggactcggcggagtggacgagaactcgcat
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| CDS seq | atgcgagttctcgtccactccgccgagtccccggcaaCaccggCGgcggccatctccatcgactcggacatggtggtcatcctggcctccctcctctgcgccctcatctgcgtcgccggcctggtcctcgtggcccgctgtgcctgccgccgccgaggcgccgctaccaccaccaccaccactactactacAccggctgctacatcccCtgcacccaaAggcctgaagaagaaAgccatcgacgcgctccccaccgtgtccttcgcactcaagcagcagcagcaggcggagtgcgccatctgcctggctgagttcgccgggggggAGgagctacgcttgctgccgcactgcggccacgccttccacgtctcctgcatcgatacgtggctggggacccacgccacctgcccctcctgccgcgccaccgtcgggactagtacattattcCtccctctccccggccgctgccggagGtgcggggaggtcgacctgcccacgctgcacgatttctccaccgccacCgccaccgccCaccacaacacacctccCtag
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| Protein seq | MRVLVHSAESPATPAAAISIDSDMVVILASLLCALICVAGLVLVARCACRRRGAATTTTTTTTTPAATSPAPKGLKKKAIDALPTVSFALKQQQQAECAICLAEFAGGEELRLLPHCGHAFHVSCIDTWLGTHATCPSCRATVGTSTLFLPLPGRCRRCGEVDLPTLHDFSTATATAHHNTPP |
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| Function | RING-H2 finger protein ATL80 [UniProtKB/Swiss-Prot:Q9LM69] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0039720 | OsNaBo_02g0039720.01 | Chr02 | 37630346 | 37630897 | - | NAM | ||
| CDS seq | atgcgagttctcgtccactccgccgagtccccggcaaCaccggCGgcggccatctccatcgactcggacatggtggtcatcctggcctccctcctctgcgccctcatctgcgtcgccggcctggtcctcgtggcccgctgtgcctgccgccgccgaggcgccgctaccaccaccaccaccactactactacAccggctgctacatcccCtgcacccaaAggcctgaagaagaaAgccatcgacgcgctccccaccgtgtccttcgcactcaagcagcagcagcaggcggagtgcgccatctgcctggctgagttcgccgggggggAGgagctacgcttgctgccgcactgcggccacgccttccacgtctcctgcatcgatacgtggctggggacccacgccacctgcccctcctgccgcgccaccgtcgggactagtacattattcCtccctctccccggccgctgccggagGtgcggggaggtcgacctgcccacgctgcacgatttctccaccgccacCgccaccgccCaccacaacacacctccCtag
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| Protein seq | MRVLVHSAESPATPAAAISIDSDMVVILASLLCALICVAGLVLVARCACRRRGAATTTTTTTTTPAATSPAPKGLKKKAIDALPTVSFALKQQQQAECAICLAEFAGGEELRLLPHCGHAFHVSCIDTWLGTHATCPSCRATVGTSTLFLPLPGRCRRCGEVDLPTLHDFSTATATAHHNTPP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.243616 | 15.318596 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0832150 | RBH | 0.919035 | 0.922887 | 1.815677 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g58540 | RBH | 0.513123 | 0.676499 | 0.355983 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0832150 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0039970 | RBH | 0.000000 | 4.753862 | 3.355474 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0039990 | RBH | 0.0 | 1.680322 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0039910 | RBH | 0.765472 | 10.953124 | 4.650857 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0039530 | RBH | 0.105663 | 0.106860 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0039440 | RBH | 2.483597 | 1.763263 | 4.019606 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0583900 | SBH | 4.315527 | 7.488172 | 5.4683985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0039140 | RBH | 0.229551 | 0.095135 | 0.032435 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0615900 | SBH | 4.870665 | 8.193341 | 6.805149 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0039420 | RBH | 0.170470 | 0.273979 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0039330 | RBH | 0.529464 | 14.322831 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0039490 | RBH | 2.208888 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0039490 | RBH | 0.0 | 0.0 | 1.393450 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0039130 | RBH | 0.558828 | 4.934762 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G039950 | RBH | 0.204679 | 2.318420 | 0.728608 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
