Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0039080 | OGI:02099400 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:37301451-37304251 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | caactgtgcaagaatgtctgcagtgtaacatgtgttacacatcctttaacctcacgtacatttagtttgtagtaaatggtacttgccaccaaatcattCtccaagtgatgagactgcccggccacttacatgtctagatgcactgaagcagtatatttccgtaaaatatgtattctaggatttctgctctcttgcaagatcatacctgccacatttcaaacatgccaccctatgagattactgcaacaaacttttcagagagccaaaacgcttgtcgaggattagacaatagaatcattcaatcagcactactgaccaccctgacAagataaagaaacatctatatctggtagataagagaccaaacttcgcattttaaactctgtaaaggTttttaagtaaacgttgagcttgccatgtcattcctggTtttgagaatgctctgcatatAaaactaagagtgcctttagatggactgaatccTttttctttcatatctttgagacaTtttttcacctcagttccatttcgaatccttgaccatccacttacaaggatatcataagtacaggatgtaggatgaacacctctcttttgcatatccttgaagagctctttagcttgagtcatcattcctgctttagtgaagtcacttataagagcattataagtgcttactttaggaacaaagccctttcccaccatttcacaatacaatctcattgcttcgactttgttgctttgttttccatgtcctgtaaccagtatgtcataggtgagatTAttgggttcaagcccactcttctccatctcaatgagcacggtgcctgcttctccgatccttccaacagactcaagaccacccagaagcgtgttgaaagtagctatatttggtgaaatgttttggtgaagcatctgagcatatgtagcaaatgcattatctagatggctgctcttgcaatgaccaagaataagagcaTtgaatgtgattgtgtctggggcaattccactccccaacatttcttccagaacaactgtggcttttcttgtcatgccatggtaacacagaacttgcaaaagcgtattgtatacggtgatatcagcatgaagcccagcattcatcatccattcatgaatatccagaatcacatccaacctcctgctttgtgaacatgcttgcaaaacccgtcgatgagtcagagaggatggagagaatccagctgagaccatctcatttagcaaatactttgccttctccactgccccagtcccaaagagaccagcaaccagtgtgttgtatgtgatgaggttaggctttatggagctcatcttcatttcatgaaggagTtttagagctttagcagtctctcctttcctgcaatgcgaaacaatcatagtgttatatgttgattgatcaggttttaatcccatatttctcatctctgtcaagatggattttgcttccttaaacttcccaagaatgcaaaggcaattgataaacacattataaacaactgcatcgggcaacatgtttctgtccattaactcctgaccaaacttaaaagcagtaggcatgtcgcctgctttgaagagcccatctattaaagtggtatagtttacgtgatctagtgacaggccactcccactcgcatctttaaacaatgccatggcttcctctatttttccgttctgtctcaaaccattcaccagagaatcaacaatgaaTttatttacctcgacaccctcacatagcatgtcatggtacacctcaagagctgcatcttgcccttggaacttgaagaaaccatcaataagtgttccgtaggtcaccacatttggattgatgCccctttccttcatcatcctcttatactcagttgctttgtcaagcaatcctcttttaacaaagccgttgatgaccgatgagaacgtaacaacatttggactgatcgatttctcctccatttccagcaacacctgctctgcctcatcgacgttgtgagctttgcagagagcgtcgatcaatacagtgtatgtaacaccattgagggagagattatctgaaagagcAaaacgaagtgtgtcctttacttcatcagtcttgccttgtttacccaaccagtccatcaaagcagtataggtgaccaaatccatgaccacgcctctagaaaccatctcccccaacaggctgagcaactccttgcccctcccagctttcgccagcgagtcaataagcgtacagtaggtgacatggttcggcacagccccaaccttgtccatctccctgaaaagagcatacgcctccgagaagcggccatccctacaaagtccagcaacgagagcgctaagcgtgaccacatccagcagcactccattcctgaccattccctcatacaaatcgaatgcctcctcgacccctttcgtcctacagtagtacacAatgaagggtgtgtaggtcgccacattcggatcaacccctgcctccttcatcatgtccagcacgccccgcgcagcatcaacctggccggcgcggcagaacccggcaaccaaggtattgtagccACCACATCCATTGGCAGCCCCTGTGCCGTCATCCTGTCGGCCACGGACAATGCTGCGGGCGTGTCCCCAACCCTGCAATATCCAGCAATGAGAGTGTTCCAGCCGATGACATCCAAGGCGTGGATCCCTCCGCCCCTGTCGGCCAGGGCCGCCGCCGCGTCGACCTGGCCATTCCTGCAGAGCCCAGCGAGCAGAGTGTTGACGGTGACCCCGTCGAACGGCACCCCGCGCTTGCACAT
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| CDS seq | ATGTGCAAGCGCGGGGTGCCGTTCGACGGGGTCACCGTCAACACTCTGCTCGCTGGGCTCTGCAGGAATGGCCAGGGTTGGGGACACGCCCGCAGCATTGTCCGTGGCCGACAGGATGACGGCACAGGGGCTGCCAATGGATGTGGTggctacaataccttggttgccgggttctgccgcgccggccaggttgatgctgcgcggggcgtgctggacatgatgaaggaggcaggggttgatccgaatgtggcgacctacacacccttcatTgtgtactactgtaggacgaaaggggtcgaggaggcattcgatttgtatgagggaatggtcaggaatggagtgctgctggatgtggtcacgcttagcgctctcgttgctggactttgtagggatggccgcttctcggaggcgtatgctcttttcagggagatggacaaggttggggctgtgccgaaccatgtcacctactgtacgcttattgactcgctggcgaaagctgggaggggcaaggagttgctcagcctgttgggggagatggtttctagaggcgtggtcatggatttggtcacctatactgctttgatggactggttgggtaaacaaggcaagactgatgaagtaaaggacacacttcgtttTgctctttcagataatctctccctcaatggtgttacatacactgtattgatcgacgctctctgcaaagctcacaacgtcgatgaggcagagcaggtgttgctggaaatggaggagaaatcgatcagtccaaatgttgttacgttctcatcggtcatcaacggctttgttaaaagaggattgcttgacaaagcaactgagtataagaggatgatgaaggaaagggGcatcaatccaaatgtggtgacctacggaacacttattgatggtttcttcaagttccaagggcaagatgcagctcttgaggtgtaccatgacatgctatgtgagggtgtcgaggtaaataaAttcattgttgattctctggtgaatggtttgagacagaacggaaaaatagaggaagccatggcattgtttaaagatgcgagtgggagtggcctgtcactagatcacgtaaactataccactttaatagatgggctcttcaaagcaggcgacatgcctactgcttttaagtttggtcaggagttaatggacagaaacatgttgcccgatgcagttgtttataatgtgtttatcaattgcctttgcattcttgggaagtttaaggaagcaaaatccatcttgacagagatgagaaatatgggattaaaacctgatcaatcaacatataacactatgattgtttcgcattgcaggaaaggagagactgctaaagctctaaaActccttcatgaaatgaagatgagctccataaagcctaacctcatcacatacaacacactggttgctggtctctttgggactggggcagtggagaaggcaaagtatttgctaaatgagatggtctcagctggattctctccatcctctctgactcatcgacgggttttgcaagcatgttcacaaagcaggaggttggatgtgattctggatattcatgaatggatgatgaatgctgggcttcatgctgatatcaccgtatacaatacgcttttgcaagttctgtgttaccatggcatgacaagaaaagccacagttgttctggaagaaatgttggggagtggaattgccccagacacaatcacattcaAtgctcttattcttggtcattgcaagagcagccatctagataatgcatttgctacatatgctcagatgcttcaccaaaacatttcaccaaatatagctactttcaacacgcttctgggtggtcttgagtctgttggaaggatcggagaagcaggcaccgtgctcattgagatggagaagagtgggcttgaacccaaTAatctcacctatgacatactggttacaggacatggaaaacaaagcaacaaagtcgaagcaatgagattgtattgtgaaatggtgggaaagggctttgttcctaaagtaagcacttataatgctcttataagtgacttcactaaagcaggaatgatgactcaagctaaagagctcttcaaggatatgcaaaagagaggtgttcatcctacatcctgtacttatgatatccttgtaagtggatggtcaaggattcgaaatggaactgaggtgaaaaaAtgtctcaaagatatgaaagaaaaAggattcagtccatctaaaggcactcttagtttTatatgcagagcattctcaaaAccaggaatgacatggcaagctcaacgtttacttaaaaAcctttacagagtttaa
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| Protein seq | MCKRGVPFDGVTVNTLLAGLCRNGQGWGHARSIVRGRQDDGTGAANGCGGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAVPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSLNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVEVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCILGKFKEAKSILTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILVTGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLLKNLYRV |
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| Function | Pentatricopeptide repeat-containing protein At5g14770, mitochondrial [UniProtKB/Swiss-Prot:Q9LER0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0039080 | OsNaBo_02g0039080.01 | Chr02 | 37301451 | 37304251 | - | NAM | ||
| CDS seq | ATGTGCAAGCGCGGGGTGCCGTTCGACGGGGTCACCGTCAACACTCTGCTCGCTGGGCTCTGCAGGAATGGCCAGGGTTGGGGACACGCCCGCAGCATTGTCCGTGGCCGACAGGATGACGGCACAGGGGCTGCCAATGGATGTGGTggctacaataccttggttgccgggttctgccgcgccggccaggttgatgctgcgcggggcgtgctggacatgatgaaggaggcaggggttgatccgaatgtggcgacctacacacccttcatTgtgtactactgtaggacgaaaggggtcgaggaggcattcgatttgtatgagggaatggtcaggaatggagtgctgctggatgtggtcacgcttagcgctctcgttgctggactttgtagggatggccgcttctcggaggcgtatgctcttttcagggagatggacaaggttggggctgtgccgaaccatgtcacctactgtacgcttattgactcgctggcgaaagctgggaggggcaaggagttgctcagcctgttgggggagatggtttctagaggcgtggtcatggatttggtcacctatactgctttgatggactggttgggtaaacaaggcaagactgatgaagtaaaggacacacttcgtttTgctctttcagataatctctccctcaatggtgttacatacactgtattgatcgacgctctctgcaaagctcacaacgtcgatgaggcagagcaggtgttgctggaaatggaggagaaatcgatcagtccaaatgttgttacgttctcatcggtcatcaacggctttgttaaaagaggattgcttgacaaagcaactgagtataagaggatgatgaaggaaagggGcatcaatccaaatgtggtgacctacggaacacttattgatggtttcttcaagttccaagggcaagatgcagctcttgaggtgtaccatgacatgctatgtgagggtgtcgaggtaaataaAttcattgttgattctctggtgaatggtttgagacagaacggaaaaatagaggaagccatggcattgtttaaagatgcgagtgggagtggcctgtcactagatcacgtaaactataccactttaatagatgggctcttcaaagcaggcgacatgcctactgcttttaagtttggtcaggagttaatggacagaaacatgttgcccgatgcagttgtttataatgtgtttatcaattgcctttgcattcttgggaagtttaaggaagcaaaatccatcttgacagagatgagaaatatgggattaaaacctgatcaatcaacatataacactatgattgtttcgcattgcaggaaaggagagactgctaaagctctaaaActccttcatgaaatgaagatgagctccataaagcctaacctcatcacatacaacacactggttgctggtctctttgggactggggcagtggagaaggcaaagtatttgctaaatgagatggtctcagctggattctctccatcctctctgactcatcgacgggttttgcaagcatgttcacaaagcaggaggttggatgtgattctggatattcatgaatggatgatgaatgctgggcttcatgctgatatcaccgtatacaatacgcttttgcaagttctgtgttaccatggcatgacaagaaaagccacagttgttctggaagaaatgttggggagtggaattgccccagacacaatcacattcaAtgctcttattcttggtcattgcaagagcagccatctagataatgcatttgctacatatgctcagatgcttcaccaaaacatttcaccaaatatagctactttcaacacgcttctgggtggtcttgagtctgttggaaggatcggagaagcaggcaccgtgctcattgagatggagaagagtgggcttgaacccaaTAatctcacctatgacatactggttacaggacatggaaaacaaagcaacaaagtcgaagcaatgagattgtattgtgaaatggtgggaaagggctttgttcctaaagtaagcacttataatgctcttataagtgacttcactaaagcaggaatgatgactcaagctaaagagctcttcaaggatatgcaaaagagaggtgttcatcctacatcctgtacttatgatatccttgtaagtggatggtcaaggattcgaaatggaactgaggtgaaaaaAtgtctcaaagatatgaaagaaaaAggattcagtccatctaaaggcactcttagtttTatatgcagagcattctcaaaAccaggaatgacatggcaagctcaacgtttacttaaaaAcctttacagagtttaa
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| Protein seq | MCKRGVPFDGVTVNTLLAGLCRNGQGWGHARSIVRGRQDDGTGAANGCGGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAVPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSLNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVEVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCILGKFKEAKSILTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILVTGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLLKNLYRV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.256250 | 5.107302 | 1.087785 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0824000 | RBH | 0.404789 | 0.687035 | 0.657922 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g57800 | RBH | 0.273739 | 0.462089 | 0.169362 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0824000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0039250 | RBH | 0.000000 | 2.644536 | 2.111237 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0039280 | RBH | 0.184300 | 0.410146 | 1.197968 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0039170 | RBH | 0.613784 | 5.098926 | 4.638472 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0021430 | SBH | 0.208621 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0038830 | RBH | 1.199126 | 8.565748 | 11.273672 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0352500 | SBH | 5.2388625 | 2.854623 | 1.8374585 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0038500 | RBH | 0.0 | 0.116164 | 0.741029 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0608700 | RBH | 2.2917975 | 9.556438 | 17.4293305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0038800 | RBH | 0.063159 | 0.201114 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0038710 | RBH | 0.139290 | 2.299380 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0038850 | RBH | 1.359881 | 7.861907 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0038860 | RBH | 0.201036 | 0.213547 | 0.527107 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0038530 | RBH | 0.000000 | 3.780590 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G039180 | RBH | 0.108429 | 1.018819 | 1.492026 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0015790 | SBH | 0.000000 | 0.000000 | 0.568957 |
