Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0034130 | OGI:02090400 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:33858368-33860606 | ||||||||
| Gene Symbol | OsbHLH048 | ||||||||||
| DNA seq | gttgatcacccgtaggcacacgcaggtgctaaataattggtgctgcgagatgtgactcgacgagctggatgcttacatatgtactttgaaaattcagttaagcagatctgatccgctgattgatacatgtttaattacttgcacgcaaacatggcgggcagctagtattgtactaccctgacaatggctcaaatcgcctgaattatccatgtactaggacgggattaattgctacaaacacatacacgcacaaaaacacctctttttttttcaagctaattaactaactaatgcactcgccagcgatcttcgtgaccatctgattgacggcgccggcgatctcgtcgactgacgaaagccggcattcatcctccatctgcaacacaaaatgatgaatcaatcaaatcaaattaatctgcgcgtagggagtcagaaccgggttagccatgcgttagcgaataaagcacggtcggagaatgtttctgatttctggttggaagggtcttgtaactttatatcacagataatctgtgatgacgctaaatttgagtaatagatttacccttccccgcaaaaaaaaaaaattaatctgtcactgtaggtctgtagcgcgcgaaagaacggcttgatttggcatgcaaaccttgaggctgaaggagtagagcgccaaatggtcggcggtggtggtgacgttgaggtggagcacggtgaggccgaggcattgcagcgccaccaccatcctcagcagctgcctcggccgccgcggcgcgagcaccctcacgttcgcgtggctctccgccatggccacctcgatgtcggccgcgccgggccgcgcgccgcagccgccctcgccgtcgccggcgccagagccggccgcattgttgtcaccaactgtggtagaatactgagggaacgtgaagaacccggcgaacggcggcgccggcggcgcgtgctcggcgcgacgcttctgggcctctagcgactggagcagctgctccagctccttgacgaagttgatggcgccggcgacgatcgacgcctggtcaccctgcagcagcaaacaccacgtacggtcgatcatcagcttagcatgcattggcgccacgcacacgcaggacggcgcggcttttgatgcgcggcgaagtggtggtggtacacgagtacacgaccacacaaggtctcgccatagattccgtgacagatgcaaccaaagcgcccgctgcgcgccatatgcatatggccagggaggagatttgacatccgttacagtgaaatgttggggactcagcgcgaggcgatgcggtgaatgccaagccgttcgtccatgcatagcacacacgggcacgacgaggcgtagggatgatgatacagtactgatcgtgcgagagagggtgtcacgtatacgtacccgctgcgcgtaggatggcggcatgagggagcggagcacggcgaggtactcgttcatctgccgccgccggttgcgttccacggcgatgtggttgcgccgctggctctcggcctcctccttgttcttcaccaccttgggccgccgccgccgcctccgcgcggccgccttggcgtggccgccaccaccgccggacgctgctggcgtcggcgccgccggcggtgacgacacggggtactgcctctcgtcccagaactcctccacggcgccggaagcagcaatggagcgcgcgcaggtcgccgcgttgacccagacgctcatcatcccaccagcgccaccgccgccgccgccgtgcaccgccactccggcctcctcttgcagcaccacaccaccgttctcctcgaactcgtccatgtcaacgccgcatcccagcgacgacggcggcgcctcgtacatggcggcagcgcacgacaggtgctcctgcgggaacaccacagcttccagcgccatgagagccttctcctacctaccaaccaagcttccactcactcgctcagcctcgtaccattctagctagctggtcattagcacgtaccaggtaggcaagaagtggccaatctccacctgtgaccacaagctgagaactcgagattggcaagatggttactggttgccttccacctccaccatgggcggcgtgcatgggagggaggagactaggagaggagaggagagaactcgggtcaggggggcagcaaaaggtggtcccttttaaagagaagcttggaatatcatggatgtgccatggggacaacgacccaacctgccacggca
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| CDS seq | atggcgctggaagctgtggtgttcccgcaggagcacctgtcgtgcgctgccgccatgtacgaggcgccgccgtcgtcgctgggatgcggcgttgacatggacgagttcgaggagaacggtggtgtggtgctgcaagaggaggccggagtggcggtgcacggcggcggcggcggtggcgctggtgggatgatgagcgtctgggtcaacgcggcgacctgcgcgcgctccattgctgcttccggcgccgtggaggagttctgggacgagaggcagtaccccgtgtcgtcaccgccggcggcgccgacgccagcagcgtccggcggtggtggcggccacgccaaggcggccgcgcggaggcggcggcggcggcccaaggtggtgaagaacaaggaggaggccgagagccagcggcgcaaccacatcgccgtggaacgcaaccggcggcggcagatgaacgagtacctcgccgtgctccgctccctcatgccgccatcctacgcgcagcggggtgaccaggcgtcgatcgtcgccggcgccatcaacttcgtcaaggagctggagcagctgctccagtcgctagaggcccagaagcgtcgcgccgagcacgcgccgccggcgccgccgttcgccgggttcttcacgttccctcagtattctaccacagttggtgacaacaatgcggccggctctggcgccggcgacggcgagggcggctgcggcgcgcggcccggcgcggccgacatcgaggtggccatggcggagagccacgcgaacgtgagggtgctcgcgccgcggcggccgaggcagctgctgaggatggtggtggcgctgcaatgcctcggcctcaccgtgctccacctcaacgtcaccaccaccgccgaccatttggcgctctactccttcagcctcaaggtttgcatgccaaatcaagccgttctttcgcgcgctacagacctacag
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| Protein seq | MALEAVVFPQEHLSCAAAMYEAPPSSLGCGVDMDEFEENGGVVLQEEAGVAVHGGGGGGAGGMMSVWVNAATCARSIAASGAVEEFWDERQYPVSSPPAAPTPAASGGGGGHAKAAARRRRRRPKVVKNKEEAESQRRNHIAVERNRRRQMNEYLAVLRSLMPPSYAQRGDQASIVAGAINFVKELEQLLQSLEAQKRRAEHAPPAPPFAGFFTFPQYSTTVGDNNAAGSGAGDGEGGCGARPGAADIEVAMAESHANVRVLAPRRPRQLLRMVVALQCLGLTVLHLNVTTTADHLALYSFSLKVCMPNQAVLSRATDLQ |
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| Function | Transcription factor bHLH96 [UniProtKB/Swiss-Prot:Q9C7T4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0034130 | OsNaBo_02g0034130.01 | Chr02 | 33858368 | 33860606 | - | NAM | ||
| CDS seq | atggcgctggaagctgtggtgttcccgcaggagcacctgtcgtgcgctgccgccatgtacgaggcgccgccgtcgtcgctgggatgcggcgttgacatggacgagttcgaggagaacggtggtgtggtgctgcaagaggaggccggagtggcggtgcacggcggcggcggcggtggcgctggtgggatgatgagcgtctgggtcaacgcggcgacctgcgcgcgctccattgctgcttccggcgccgtggaggagttctgggacgagaggcagtaccccgtgtcgtcaccgccggcggcgccgacgccagcagcgtccggcggtggtggcggccacgccaaggcggccgcgcggaggcggcggcggcggcccaaggtggtgaagaacaaggaggaggccgagagccagcggcgcaaccacatcgccgtggaacgcaaccggcggcggcagatgaacgagtacctcgccgtgctccgctccctcatgccgccatcctacgcgcagcggggtgaccaggcgtcgatcgtcgccggcgccatcaacttcgtcaaggagctggagcagctgctccagtcgctagaggcccagaagcgtcgcgccgagcacgcgccgccggcgccgccgttcgccgggttcttcacgttccctcagtattctaccacagttggtgacaacaatgcggccggctctggcgccggcgacggcgagggcggctgcggcgcgcggcccggcgcggccgacatcgaggtggccatggcggagagccacgcgaacgtgagggtgctcgcgccgcggcggccgaggcagctgctgaggatggtggtggcgctgcaatgcctcggcctcaccgtgctccacctcaacgtcaccaccaccgccgaccatttggcgctctactccttcagcctcaaggtttgcatgccaaatcaagccgttctttcgcgcgctacagacctacag
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| Protein seq | MALEAVVFPQEHLSCAAAMYEAPPSSLGCGVDMDEFEENGGVVLQEEAGVAVHGGGGGGAGGMMSVWVNAATCARSIAASGAVEEFWDERQYPVSSPPAAPTPAASGGGGGHAKAAARRRRRRPKVVKNKEEAESQRRNHIAVERNRRRQMNEYLAVLRSLMPPSYAQRGDQASIVAGAINFVKELEQLLQSLEAQKRRAEHAPPAPPFAGFFTFPQYSTTVGDNNAAGSGAGDGEGGCGARPGAADIEVAMAESHANVRVLAPRRPRQLLRMVVALQCLGLTVLHLNVTTTADHLALYSFSLKVCMPNQAVLSRATDLQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0034130 | OsNaBo_02g0034130.02 | Chr02 | 33858425 | 33860606 | - | IsoSeq | ||
| CDS seq | ccgtggcaggttgggtcgttgtccccatggcacatccatgatattccaagcttctctttaaaagggaccaccttttgctgcccccctgacccgagttctctcctctcctctcctagtctcctccctcccatgcacgccgcccatggtggaggtggaaggcaaccagtaaccatcttgccaatctcgagttctcagcttgtggtcacaggtggagattggccacttcttgcctacctggtacgtgctaatgaccagctagctagaatggtacga
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| Protein seq | PWQVGSLSPWHIHDIPSFSLKGTTFCCPPDPSSLLSSPSLLPPMHAAHGGGGRQPVTILPISSSQLVVTGGDWPLLAYLVRANDQLARMVR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 9.467125 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0759000 | RBH | 0.0 | 0.0 | 2.052299 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g52190 | RBH | 0.0 | 0.0 | 0.573449 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0759000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0034400 | RBH | 0.0 | 10.810676 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0034490 | RBH | 0.0 | 8.239583 | 0.397612 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0034370 | RBH | 0.0 | 5.925791 | 1.360942 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0033960 | RBH | 0.0 | 0.799552 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0034020 | RBH | 0.0 | 24.936430 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0522700 | RBH | 0.3661895 | 15.183771 | 2.1578625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0033840 | RBH | 0.000000 | 1.095962 | 0.303682 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0552500 | RBH | 0.589785 | 1.784345 | 10.267494 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0034100 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0033930 | RBH | 0.0 | 1.492103 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0034210 | RBH | 0.0 | 34.058922 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0034130 | RBH | 0.0 | 0.038604 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0033710 | RBH | 0.0 | 6.431863 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G034410 | RBH | 0.0 | 8.299930 | 0.757273 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0019630 | SBH | 0.0 | 0.0 | 0.618531 |
