Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0031140 | OGI:02083990 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:31702496-31708317 | ||||||||
| Gene Symbol | NRT1.5B, OsNRT1.5B | ||||||||||
| DNA seq | agattttaatcacttttgagggtcaccaagtgaacttattccccaaatccaataatacatggttcgaacatgggctggctatatatagctcctggagtttagtcgtgacagagaagttgcatgggccatacatgattctgtcacgcgtcgttaTtactacggcaagcctagttgccatcccagtatctaaacaggagccgtcacgagttacaggcccgaagcctaaacgtgcacggtgatcttgttcgccttctcctcgttgctgtcgagcttgatgcccttgtaccacacggcgcacgcgacgtacacggcgaggtcgaccagcgagagcgcggcgaggaggaagtagaacctgtcgaggtggccggagttgaggttcccggggatccacccgggccgcctgtcgccggcggtgaggctggtgaccacgctcaccagcatgatgctcacgtagttCcccagcgagatggacgccatgcacagcgagctcccgaagctcttcacgccgtcgggggcctgcccgttgaagaactccagctgccccacgtacatgaacacctccgacgccccgatcagcgcgtactgcggcacctgccacagcacgctcagggagctcggctggtccggcgcgcccacccgcttcagccgctccacctccaccacgccggcgaccaccatggccgccatgccgaccacgagccccacgcccatccgctgcagctcggtcagcccctgcgggttgccggacaggcgcgacatgaccggcacgagcacgcgccggtagatggcgatgaacgccagcacgctgaggatgtcgaacaccgacatgctcgccgcgggcacgtggaacgacccgatgttggtgttcatggtggttccctgctccacgaacagcgacgccatctgggtgaacaccaccgagtatacgatcgtgcacagccagatgggcagcatcttcaggatgcacttcacttcctccacctgggtcaccgtgcacagcctccacggatcctgcatgttctccggcgtgcagtagtcctcctcggtgaccgtcgccgccttgtcaaggaacctgaacaccaaaacacgccaccaaatgcacatcgattatataggaaactattctaatccctcgagggttccctcatttgcttaaaaatcatctaaacgattatgaaaaattctgaaaaaatttgataacattcatacaacacatatatacatctccacaaaatcttaagtccaaactcaactcacacgtcgagataaaaaaagacaaattctgaatagtagcgtactgtttatatctaaatttgtcTTttttttttctcgatgtgtagatcgaatttgaacttgaaTtttggtggactagtaggtatcattatactctacattgtcaaaaatttttttagaatttttcacaactatttacatcgaaTttagaagaaaaaggtatacgaggggattagaatccactcccgattAtatatctcgaatcaacactgtttgatgcctgagtcaaacggcaaatcgatcaaagtgcattggcacatcgttcaaacaagatattcacctgatctggtcgctgtggaggatctttcggatgccagcaatctgggactcgtcgccgtcaacctcgtgcaggagctcgctgcgtggcacctcggcgcgccacttgcggaacgcggcgacgaacacctgcgcgatgcgggtcaacgggttgccggtcggcttgaagtggcggtagttgggggtgccgagcaagaagagcacgagcgccatggccgccgccgcggccgagacccagaaccccatgacccacctcccctcgtcctcgtagtacaccagcaccgtgttggagaagagggagcccacgTtTGAGCGCCAGGTAGAAGTAGCTGAAGAAGGCCACCTTGGAGCGGGCCTCCCTGGGGTCCGTCTCGTCGAACTGGTCGGAGCCGAACGTGGCGATGGACGGCTGGTACCCTCCGTTGCCGAACGCGATCATGTAGGTCGACAGGTAGAAGAGCGCGACGCCGGCGCTCGACGGCGCGTCGCAGTGCTCCCCCGCGGCGCCGCAGCCGGTGGGCTTCACCAGCAAGAACCACGACGCGAGTGACAGTATCACCAGGCCCTGATCATCAGCAGAAAGTTCAGAACAACACACACGACGCGTAGTTCAGCAAGATCATTCCAACAACAGAAGAGCTAATTAAAAATAATAATAATATAATTAACTTGACCACCGTACCGTGACATAGATCATCTGGAAGATTGCACACGTGATGTATCGGCCCCAGTAGGAGTCGCTCATGAAGGCGCCGATGAGGGAGAAGATGTAGACCGTGCCGGTCCACTTGCTGATGCTGTTGGCTGCCTCTGCGTTGTCCTGGTGGAGCACCCGCCGCAGGAACACCACAAGGTTCACCCCGACGCCGAAGAAGGCGCATGTCACGAGCCCATAGTTGACTGCATCAGGAACACACCTGAATTAACTGTCCAATCGATCCCAAATCCAACTTGTAACAGCTTATATATTGAAAAACAAGATTAGGTAGATTCTGCACATGGCTTTGGgaagtgtcctaatgcaacacaaggttgaacttttttttttttcgggaatacgaacacaaaggttttaacacagttcacaacaatcggtcttctgaagtaaggttttagtcaggttggttattgcccatgcagagtaaatctggatgaagagcaaaacgcgtagtgttaaacctgaagagtacagaattgatagctttccaacggtggatcaacctccaggtttggctgccactcaactggctagaagctctgcaagaaggattattcttgaaggttccagttggtggaaatctgaagtctgaactgcatacaactcagacagcgaagtaggaatttactagcaaataacaagctataaggttgtgatcacactatgtgctgacaatattagttcatagttctttgaagactgaaacataatctaatctaatcaacaaccaacgttgtcatgttgggaagccaagaaaagcagtttttcaataaacaagaaaccaatcttattAaaaACAGTTAATTTGTAGATATATGAATAACAGAATTAAAGTAAAACATAGCTTTACCTAGCAAGAGGATGGAAGATCTCCAATTCCCAGTTTTTGCTTTAACTGCCGGATTTCCTCGCCTGTCCATTGATCCATCTTCAGTGATGTCAGAAATCCTTTTCGAATCGACAGCAGTTGGAGCCATTGCCTTGCTCTATGAATTTTCCAAACAAACAACAAAACGCCGATCACCTAATGGCTGATTTAAAATTTTGTTTCAAGAAACAAGTAGCCAAATAAGAACTAAACAATAGGCAAAAAAAAAAAAACGCCGATCACCTAAGCTCTTTTTTTTTCTAGCTTTGCCAGTTCCAGAAACTACAATTTCATTTTCAATAATTGTCTAGGTTTGCATTTCCACCTACCAATTAGGTGGTTTATGTTGGACAATAAACATCATGGGTCCGATGAAGAGACAAGGGGTTGCACTCACGTGTGCGTAGGTACAGGTGCATACGTAATGGTTTGTGTACATATATACATCTTTGGTGTAGAAAAAAAAAAACTTCCATTAATGTCAGCTGGAGTATCGTTTCGGTTCGATACTTTAAAGTCCATCGATACATGAGGATGACCTTTCGTTCAAAAAGAAACATGGAGATGGCAGTTGTTTAGTTTCTTTCTTTCCcttttgatgttcctggaccctttgcaattaaaggccagagttcatctttacttgcaatagtactcagatgaagcaagtatgccgcgtgactcttatccgagcgaaaacaatgtcatgctcgaaacgtttcttcttggtttaaaatactacccctccgtcccagatataagaagttttaagattagacacgattattaagaaagtaattagaaatgagtagtggagagttgtgattggatgagtagtggaaatatgtatgaaaagtaaatggTggggattgtgattggttaggaaaagaatattaatggagaagttaTtatattttagaataaatcctgaagtctaaaagttattatattttagaacggagtatatatatatatatatatatatatatatatatatatatatatatatacatatatatacatatatacatatacatatacatacatatacatacatatacatatacatatacatacatatacatatacatacatatacatacatatacatacatatacatacacatatacaactacatacatatacatatacatatacatacaatacatacatatacatatatatacatatacatatacatacatatacatatatatacaatatatacatatacatatatatacatatacataatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaagggcggagctagctacgttcatcaccaaggttagccgatgaaattccaaaatcatttagtaaagAaaaaatttattgtacttgaaaaaatatctcgagatatcaagttttctatattaaaatttttacgctataaatattgtaccttccggtgaatagtAaaattatcctttagtaagatattgtttgaatcgatggctcatcacgctatataataaagctgaCTCTtatgatAgtttcgactgaTTtcgcctcttactctatataacattttgttcattacgctggagcgtgcaccaagcgaagaactggactaactagaactcgtgttgtgcctgaagattgtcccgtggatataccttacctttctgtttgttgttatcgtcgcccttgtggatactttctcgttttttttttatcaagggaaaacttccgggccttttttgctttaacctgtgcgagacaatcttgtcagagatgcactaagcaagtaattaaaagctgaaacgactgaagaaaagatacctaacaccgacaaaagggccctcgtccttttccgggggcccatacgtcagtcgggtgtttacacagcccatacgagctgaaactccttttttatacgtgataaacaaggagcttgagtggtggcaccaagcttgtgcacagtgcacagtcatatatcagactattcataacttacagggtaccactaccatctccaaacgtgatggcacatgtagtgtatatcacacggccacaccaccggccggccctacgtacataacacgtacgcatctctttgtgcaagcgtaccttcgctgatgaaccctccggtgcggacgcgcagcggcggcagctcgcacttctccggcgacggggacgacgacaggcacgtcacaaaggaagcgacgacctccacgacgacgacgacgcagctgctgcccaggcgtccagtcatttaccggcgcgagatcagagtggtgtgtgggctggtggcgaacaccgcaagccttacctagctaaatctcctcaaacaacaacgcggtagctcgatcgcgcgcagcgacacgatcggtgaaacgccgtgctgccgcgcgcgcgcgcgcgtcggctgctgtgatcacccgcgctccctgatggaacgatctcttgtaccgcgcgcgcagacgcagccggccggcgcgagcgcgacggagatgcgcgtactgggaggtgtgggaaatggaggagggggaagctagctagctagatagcgggtcgt
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| CDS seq | ATGGCTCCAACTGCTGTCGATTCGAAAAGGATTTCTGACATCACTGAAGATGGATCAATGGACAGGCGAGGAAATCCGGCAGTTAAAGCAAAAACTGGGAATTGGAGATCTTCCATCCTCTTGCTAGTCAACTATGGGCTCGTGACATGCGCCTTCTTCGGCGTCGGGGTGAACCTTGTGGTGTTCCTGCGGCGGGTGCTCCACCAGGACAACGCAGAGGCAGCCAACAGCATCAGCAAGTGGACCGGCACGGTCTACATCTTCTCCCTCATCGGCGCCTTCATGAGCGACTCCTACTGGGGCCGATACATCACGTGTGCAATCTTCCAGATGATCTATGTCACGGGCCTGGTGATACTGTCACTCGCGTCGTGGTTCTTGCTGGTGAAGCCCACCGGCTGCGGCGCCGCGGGGGAGCACTGCGACGCGCCGTCGAGCGCCGGCGTCGCGCTCTTCTACCTGTCGACCTACATGATCGCGTTCGGCAACGGAGGGTACCAGCCGTCCATCGCCACGTTCGGCTCCGACCAGTTCGACGAGACGGACCCCAGGGAGGCCCGCTCCAAGGTGGCCTTCTTCAGCTACTTCTACCTGGCGCTCAaAcgtgggctccctcttctccaacacggtgctggtgacgaggggaggtgggtcatggggttctgggtctcggccgcggcggcggccatggcgctcgtgctcttcttgctcggcacccccaactaccgccacttcaagccgaccggcaacccgttgacccgcatcgcgcaggtgttcgtcgccgcgttccgcaagtggcgcgccgaggtgccacgcagcgagctcctgcacgaggttgacggcgacgagtcccagattgctggcatccgaaagatcctccacagcgaccagatcaggctgtgcacggtgacccaggtggaggaagtgaagtgcatcctgaagatgctgcccatctggctgtgcacgatcgtatactcggtggtgttcacccagatggcgtcgctgttcgtggagcagggaaccaccatgaacaccaacatcgggtcgttccacgtgcccgcggcgagcatgtcggtgttcgacatcctcagcgtgctggcgttcatcgccatctaccggcgcgtgctcgtgccggtcatgtcgcgcctgtccggcaacccgcaggggctgaccgagctgcagcggatgggcgtggggctcgtggtcggcatggcggccatggtggtcgccggcgtggtggaggtggagcggctgaagcgggtgggcgcgccggaccagccgagctccctgagcgtgctgtggcaggtgccgcagtacgcgctgatcggggcgtcggaggtgttcatgtacgtggggcagctggagttcttcaacgggcaggcccccgacggcgtgaagagcttcgggagctcgctgtgcatggcgtccatctcgctgggGaactacgtgagcatcatgctggtgagcgtggtcaccagcctcaccgccggcgacaggcggcccgggtggatccccgggaacctcaactccggccacctcgacaggttctacttcctcctcgccgcgctctcgctggtcgacctcgccgtgtacgtcgcgtgcgccgtgtggtacaagggcatcaagctcgacagcaacgaggagaaggcgaacaagatcaccgtgcacgtttag
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| Protein seq | MAPTAVDSKRISDITEDGSMDRRGNPAVKAKTGNWRSSILLLVNYGLVTCAFFGVGVNLVVFLRRVLHQDNAEAANSISKWTGTVYIFSLIGAFMSDSYWGRYITCAIFQMIYVTGLVILSLASWFLLVKPTGCGAAGEHCDAPSSAGVALFYLSTYMIAFGNGGYQPSIATFGSDQFDETDPREARSKVAFFSYFYLALKRGLPLLQHGAGDEGRWVMGFWVSAAAAAMALVLFLLGTPNYRHFKPTGNPLTRIAQVFVAAFRKWRAEVPRSELLHEVDGDESQIAGIRKILHSDQIRLCTVTQVEEVKCILKMLPIWLCTIVYSVVFTQMASLFVEQGTTMNTNIGSFHVPAASMSVFDILSVLAFIAIYRRVLVPVMSRLSGNPQGLTELQRMGVGLVVGMAAMVVAGVVEVERLKRVGAPDQPSSLSVLWQVPQYALIGASEVFMYVGQLEFFNGQAPDGVKSFGSSLCMASISLGNYVSIMLVSVVTSLTAGDRRPGWIPGNLNSGHLDRFYFLLAALSLVDLAVYVACAVWYKGIKLDSNEEKANKITVHV |
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| Function | Protein NRT1/ PTR FAMILY 7.3 [UniProtKB/Swiss-Prot:Q9LQL2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0031140 | OsNaBo_02g0031140.01 | Chr02 | 31702718 | 31708317 | - | NAM | ||
| CDS seq | ATGGCTCCAACTGCTGTCGATTCGAAAAGGATTTCTGACATCACTGAAGATGGATCAATGGACAGGCGAGGAAATCCGGCAGTTAAAGCAAAAACTGGGAATTGGAGATCTTCCATCCTCTTGCTAGTCAACTATGGGCTCGTGACATGCGCCTTCTTCGGCGTCGGGGTGAACCTTGTGGTGTTCCTGCGGCGGGTGCTCCACCAGGACAACGCAGAGGCAGCCAACAGCATCAGCAAGTGGACCGGCACGGTCTACATCTTCTCCCTCATCGGCGCCTTCATGAGCGACTCCTACTGGGGCCGATACATCACGTGTGCAATCTTCCAGATGATCTATGTCACGGGCCTGGTGATACTGTCACTCGCGTCGTGGTTCTTGCTGGTGAAGCCCACCGGCTGCGGCGCCGCGGGGGAGCACTGCGACGCGCCGTCGAGCGCCGGCGTCGCGCTCTTCTACCTGTCGACCTACATGATCGCGTTCGGCAACGGAGGGTACCAGCCGTCCATCGCCACGTTCGGCTCCGACCAGTTCGACGAGACGGACCCCAGGGAGGCCCGCTCCAAGGTGGCCTTCTTCAGCTACTTCTACCTGGCGCTCAaAcgtgggctccctcttctccaacacggtgctggtgacgaggggaggtgggtcatggggttctgggtctcggccgcggcggcggccatggcgctcgtgctcttcttgctcggcacccccaactaccgccacttcaagccgaccggcaacccgttgacccgcatcgcgcaggtgttcgtcgccgcgttccgcaagtggcgcgccgaggtgccacgcagcgagctcctgcacgaggttgacggcgacgagtcccagattgctggcatccgaaagatcctccacagcgaccagatcaggctgtgcacggtgacccaggtggaggaagtgaagtgcatcctgaagatgctgcccatctggctgtgcacgatcgtatactcggtggtgttcacccagatggcgtcgctgttcgtggagcagggaaccaccatgaacaccaacatcgggtcgttccacgtgcccgcggcgagcatgtcggtgttcgacatcctcagcgtgctggcgttcatcgccatctaccggcgcgtgctcgtgccggtcatgtcgcgcctgtccggcaacccgcaggggctgaccgagctgcagcggatgggcgtggggctcgtggtcggcatggcggccatggtggtcgccggcgtggtggaggtggagcggctgaagcgggtgggcgcgccggaccagccgagctccctgagcgtgctgtggcaggtgccgcagtacgcgctgatcggggcgtcggaggtgttcatgtacgtggggcagctggagttcttcaacgggcaggcccccgacggcgtgaagagcttcgggagctcgctgtgcatggcgtccatctcgctgggGaactacgtgagcatcatgctggtgagcgtggtcaccagcctcaccgccggcgacaggcggcccgggtggatccccgggaacctcaactccggccacctcgacaggttctacttcctcctcgccgcgctctcgctggtcgacctcgccgtgtacgtcgcgtgcgccgtgtggtacaagggcatcaagctcgacagcaacgaggagaaggcgaacaagatcaccgtgcacgtttag
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| Protein seq | MAPTAVDSKRISDITEDGSMDRRGNPAVKAKTGNWRSSILLLVNYGLVTCAFFGVGVNLVVFLRRVLHQDNAEAANSISKWTGTVYIFSLIGAFMSDSYWGRYITCAIFQMIYVTGLVILSLASWFLLVKPTGCGAAGEHCDAPSSAGVALFYLSTYMIAFGNGGYQPSIATFGSDQFDETDPREARSKVAFFSYFYLALKRGLPLLQHGAGDEGRWVMGFWVSAAAAAMALVLFLLGTPNYRHFKPTGNPLTRIAQVFVAAFRKWRAEVPRSELLHEVDGDESQIAGIRKILHSDQIRLCTVTQVEEVKCILKMLPIWLCTIVYSVVFTQMASLFVEQGTTMNTNIGSFHVPAASMSVFDILSVLAFIAIYRRVLVPVMSRLSGNPQGLTELQRMGVGLVVGMAAMVVAGVVEVERLKRVGAPDQPSSLSVLWQVPQYALIGASEVFMYVGQLEFFNGQAPDGVKSFGSSLCMASISLGNYVSIMLVSVVTSLTAGDRRPGWIPGNLNSGHLDRFYFLLAALSLVDLAVYVACAVWYKGIKLDSNEEKANKITVHV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0031140 | OsNaBo_02g0031140.02 | Chr02 | 31702496 | 31708317 | - | IsoSeq | ||
| CDS seq | atggcaactaggcttgccgtagtaAtaacgacgcgtgacagaatcatgtatggcccatgcaacttctctgtcacgactaaactccaggagctatatatagccagcccatgttcgaaccatgtattattggatttggggaataagttcact |
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| Protein seq | MATRLAVVITTRDRIMYGPCNFSVTTKLQELYIASPCSNHVLLDLGNKFT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 31703495 | 31704069 | - | OsNaBo_02g0031140.02 | OsNaBo_02g0031140.01,OsNaBo_02g0031140.02 | All |
| A3 | Chr02 | 31707455 | 31707870 | - | OsNaBo_02g0031140.02 | OsNaBo_02g0031140.01,OsNaBo_02g0031140.02 | All |
| A3 | Chr02 | 31707991 | 31708072 | - | OsNaBo_02g0031140.02 | OsNaBo_02g0031140.01,OsNaBo_02g0031140.02 | All |
| RI | Chr02 | 31704069 | 31704629 | - | OsNaBo_02g0031140.02 | OsNaBo_02g0031140.01,OsNaBo_02g0031140.02 | All |
| SE | Chr02 | 31704964 | 31705633 | - | OsNaBo_02g0031140.02 | OsNaBo_02g0031140.01,OsNaBo_02g0031140.02 | All |
| A5 | Chr02 | 31705768 | 31707421 | - | OsNaBo_02g0031140.02 | OsNaBo_02g0031140.01,OsNaBo_02g0031140.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 9.650151 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0716800 | RBH | 0.000000 | 0.0 | 3.228473 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g48570 | RBH | 0.037693 | 0.0 | 0.782620 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0716800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0031360 | RBH | 0.0 | 0.0 | 12.023958 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0031470 | RBH | 0.0 | 0.0 | 3.182716 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0031340 | RBH | 0.171756 | 0.867770 | 12.715247 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0030930 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0031050 | RBH | 0.0 | 0.0 | 25.146849 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0484900 | RBH | 4.1437445 | 0.206135 | 2.06368 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0030810 | RBH | 0.0 | 0.0 | 0.562868 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0512900 | RBH | 3.6457395 | 0.0158065 | 1.9618565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0031100 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0030890 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0031250 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0031100 | RBH | 0.151146 | 0.0 | 1.092240 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0030720 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G031380 | RBH | 0.0 | 0.0 | 1.397048 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0013560 | RBH | 0.0 | 0.0 | 0.0 |
