Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0029410 | OGI:02079820 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:30285739-30289438 | ||||||||
| Gene Symbol | NRT1.5A, OsNRT1.5A, OsNPF7.9 | ||||||||||
| DNA seq | taggcagggaaaatgaagtattattagcactagtatgcgtatcaatcaacagtcggcaatgcacagaagcattgatcagtcactcttgcagaagaaaaaacatgagtggtcagtaacagtcgcgttctcttgttacattggccagaaaaatgtgaaacgatgaaacacaggcgtacatgatagaacaatactgcatctgtaggcgacctcttattctttagtatcgtgtcactatccccccgtgcatgtcctatcatcaacggagacttgtcgtgctaaaccaactcgtcccaatgcaactcatcccctcgaagagtctgcagtctccgtctcaagaaccacgacagcctgccatgcatctatcgagcgcgagcagacggccgattcatcctgacgcttacaccgttgccgccatctgcctgccggccacgccatcctcctcctccccgtcgctccggtcgacgtccaccgtgccactcctgtaccggctcgcgcacacgaggtacacggcgaagtccgcgacggccagcacggcgagcaggaagaagaacttgtcgaggtggccctcgttaaggtcggcggggatccagccggggcggccgcgcacggcggtggccttggtcaccgcgctcacgatgacgtcgctgaagtagttgccgagcgacatggacatcatgcagagcgcgctcccgaagctcttgagcgcgtcgggcatctccccgttgaagaactcgagctggccgacgtacatcatcacctccgacacgccgatcagcgcgtactgcggcacctgccacatgatgtgcaggtcgctgctcatcgccgtggtggcgccggccttcctgaagtgctcgaccgtgccggcggtggccatggccatcgcgccgagcaccaggccgaggcccatcctctgcagctcggttgggccggtgcggcggcccgtgagccgcgacacgagcgggcagacggcccggcggtacaggaagatggtggtggcgacggtgaggatgtcgaaggccgacatgctggagggcgggacggagaagcccgggaaccgggtggtgcggcgcatcgcggcgccctgcacgacgaacagcgacgccatctgcgtgaacacgaccgaatagaggatggtgcagagccagatggggaggagccgcaggatgctcttcacctcctccacctgcgtcaccgtgcacagcttccaggggtcacgcggttgggtgcacgtgccaagcttcgggttagcgcccaccaccgccgcacggtccaagaacctgcaatacatggcgagttcagtgcgtgcatgcgtgatcagttcacagctcacaaaaccacacaacactttacctgaaaccttccgtgtgcaggagcttcctcccaccggaatccgccttctcgtcgctctcgtagagtgtcacggcgcccggcgactcgccggccttccagttcctgcacgcggcgaacgcgacctggaagatcctgccaaccgggttgccgctggggcggatgtaccggtagcggagcgtgccgccgaggaacagcagcagcgcggtggccgcggcggcggtggagacccagaagccgagcgcccagttgccctcgtcctcgaggaagctgaggaaggtgttggagaagagcgagccgaggttgagcgccaggtagaagtagctgaagaaggataccttggagtgcgactcggccgggtcctcgccgtcgaactggtcggcgccgaaggtggcgacgttgggctggtacccgccgttgccgaacgcgatcatgtacagcgcgatgtagaagatccccagctccgcgccggagtgcggctcgcagggcacgtgctccgtgccgcacccgaccggcctgatcaggtacagccgcgacgacagggacagcagcgcgaggccctgcaggcaaaacaccgtgacgcgaacgagtcagccgcgtgatccacatctcctgggcgtacgcgcaacgcgaccgcgatgtgccttgggccgatcgcgcaacgcgaccgcgatgtgccttgggccgatcgaccgaccggtcggcgccaccacgtactactctatgcctctactatatggaccatccactttcgacaccagcatacgtgcagatacaatccacccagtacagagtacaggccgaattaactccactctggacagattctcccgcaccaatcgctgttactttgtacgtacgttcctacgcatctatagaccatcatttcccgtgaaatgggcaatcagaacggaaaaaactggtcactgatgattgcccgaccaacagatcagaccgaagtagctagaaacatgagatcaatcgatcgcaccgagaaaggcgcgtggttttcagatcgaactgaggagagagagggatgtgccgtgtggtggtgcttacaaggacaaagatggcctggaatatggcgcaggtcttgtagcggccccagtaggagtcgctgaggaaggcgccgatgagggagaacatgtaaaccgtgccggtccatttgctcacgttgttggcggcgtcgccgttgctctgctgcagcaccctcgtcaggaacaacaccaggttcacgtttaccccgaagaacgccagggttgccagaccctggttcactgcacaacacacacaaaataaaaaggtgtcaaggccttcaagaataattctaaacaaacataaaacgatgcacacatgcaaacagtgcgccgcttaactcccccatgaaagcagcaataaagccaaactgtggtagggcgatatcgtactccacataccctacagatcgatcgatcatttgatcgctatgcatggttgctacatcgtggataccatgtccgatgtctcctagggagaccctaatgtggcgctagtaatgcgtgcgcccgaatcccccgtggcgaggaaccctccagttgtgggcgttgcatggccgatgtcacctcgtcatgcagcattccgcgtaaagacccggcgcctaccgccactttaagcctcaacgtcgagtcacctcagaccgacttgcactgttgcgaaaacacttcactggaaagcccagtcatcgactttgtctccattttttgctggcccgtctcagccgggaaggagatggtgaaatcagcagagttcagcacaaagtacttacgaagaataaggccgccggcgagccatccgccggacttgcccttcaccgccggtgagcccttgatatccacggagccatcgagggtgtactcgcagcatacatccttcggggcgttactcgtctcatcgccttcgacgacgatcaccctcatcttcatgtctccgtcgttgccagactgcaaccatcaagttacatgctgtcagttagtttccagtttcatgtgctgccatgtatacgcatggtgtttcatcactgaacatggagacaaaactgaatcttggctacagaccaacaagctacagaaacaagctgaaaccgtgtagctttgctaacatatatgccaagaacgatcaaatcatgagcacgtactaaccatttcttgctcctcctcgggctctcctcaccggtggcctccgtcggctaatgcaacgagaagctctgtgtgaggaagccgagcaggaggaagaagaagaggggatctatggaagtggttgtgtctgagcagagaggtctgggatttatagagctcagctgcagctggctagctgg
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| CDS seq | atgtctggcaacgacggagacatgaagatgagggtgatcgtcgtcgaaggcgatgagacgagtaacgccccgaaggatgtatgctgcgagtacaccctcgatggctccgtggatatcaagggctcaccggcggtgaagggcaagtccggcggatggctcgccggcggccttattcttctgaaccagggtctggcaaccctggcgttcttcggggtaaacgtgaacctggtgttgttcctgacgagggtgctgcagcagagcaacggcgacgccgccaacaacgtgagcaaatggaccggcacggtttacatgttctccctcatcggcgccttcctcagcgactcctactggggccgctacaagacctgcgccatattccaggccatctttgtccttggcctcgcgctgctgtccctgtcgtcgcggctgtacctgatcaggccggtcgggtgcggcacggagcacgtgccctgcgagccgcactccggcgcggagctggggatcttctacatcgcgctgtacatgatcgcgttcggcaacggcgggtaccagcccaacgtcgccaccttcggcgccgaccagttcgacggcgaggacccggccgagtcgcactccaaggtatccttcttcagctacttctacctggcgctcaacctcggctcgctcttctccaacaccttcctcagcttcctcgaggacgagggcaactgggcgctcggcttctgggtctccaccgccgccgcggccaccgcgctgctgctgttcctcggcggcacgctccgctaccggtacatccgccccagcggcaacccggttggcaggatcttccaggtcgcgttcgccgcgtgcaggaactggaaggccggcgagtcgccgggcgccgtgacactctacgagagcgacgagaaggcggattccggtgggaggaagctcctgcacacggaaggtttcaggttcttggaccgtgcggcggtggtgggcgctaacccgaagcttggcacgtgcacccaaccgcgtgacccctggaagctgtgcacggtgacgcaggtggaggaggtgaagagcatcctgcggctcctccccatctggctctgcaccatcctctattcggtcgtgttcacgcagatggcgtcgctgttcgtcgtgcagggcgccgcgatgcgccgcaccacccggttcccgggcttctccgtcccgccctccagcatgtcggccttcgacatcctcaccgtcgccaccaccatcttcctgtaccgccgggccgtctgcccgctcgtgtcgcggctcacgggccgccgcaccggcccaaccgagctgcagaggatgggcctcggcctggtgctcggcgcgatggccatggccaccgccggcacggtcgagcacttcaggaaggccggcgccaccacggcgatgagcagcgacctgcacatcatgtggcaggtgccgcagtacgcgctgatcggcgtgtcggaggtgatgatgtacgtcggccagctcgagttcttcaacggggagatgcccgacgcgctcaagagcttcgggagcgcgctctgcatgatgtccatgtcgctcggcaactacttcagcgacgtcatcgtgagcgcggtgaccaaggccaccgccgtgcgcggccgccccggctggatccccgccgaccttaacgagggccacctcgacaagttcttcttcctgctcgccgtgctggccgtcgcggacttcgccgtgtacctcgtgtgcgcgagccggtacaggagtggcacggtggacgtcgaccggagcgacggggaggaggaggatggcgtggccggcaggcagatggcggcaacggtgtaa
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| Protein seq | MSGNDGDMKMRVIVVEGDETSNAPKDVCCEYTLDGSVDIKGSPAVKGKSGGWLAGGLILLNQGLATLAFFGVNVNLVLFLTRVLQQSNGDAANNVSKWTGTVYMFSLIGAFLSDSYWGRYKTCAIFQAIFVLGLALLSLSSRLYLIRPVGCGTEHVPCEPHSGAELGIFYIALYMIAFGNGGYQPNVATFGADQFDGEDPAESHSKVSFFSYFYLALNLGSLFSNTFLSFLEDEGNWALGFWVSTAAAATALLLFLGGTLRYRYIRPSGNPVGRIFQVAFAACRNWKAGESPGAVTLYESDEKADSGGRKLLHTEGFRFLDRAAVVGANPKLGTCTQPRDPWKLCTVTQVEEVKSILRLLPIWLCTILYSVVFTQMASLFVVQGAAMRRTTRFPGFSVPPSSMSAFDILTVATTIFLYRRAVCPLVSRLTGRRTGPTELQRMGLGLVLGAMAMATAGTVEHFRKAGATTAMSSDLHIMWQVPQYALIGVSEVMMYVGQLEFFNGEMPDALKSFGSALCMMSMSLGNYFSDVIVSAVTKATAVRGRPGWIPADLNEGHLDKFFFLLAVLAVADFAVYLVCASRYRSGTVDVDRSDGEEEDGVAGRQMAATV |
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| Function | Protein NRT1/ PTR FAMILY 7.3 [UniProtKB/Swiss-Prot:Q9LQL2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0029410 | OsNaBo_02g0029410.01 | Chr02 | 30285739 | 30289382 | - | NAM | ||
| CDS seq | atgaagatgagggtgatcgtcgtcgaaggcgatgagacgagtaacgccccgaaggatgtatgctgcgagtacaccctcgatggctccgtggatatcaagggctcaccggcggtgaagggcaagtccggcggatggctcgccggcggccttattcttctgaaccagggtctggcaaccctggcgttcttcggggtaaacgtgaacctggtgttgttcctgacgagggtgctgcagcagagcaacggcgacgccgccaacaacgtgagcaaatggaccggcacggtttacatgttctccctcatcggcgccttcctcagcgactcctactggggccgctacaagacctgcgccatattccaggccatctttgtccttggcctcgcgctgctgtccctgtcgtcgcggctgtacctgatcaggccggtcgggtgcggcacggagcacgtgccctgcgagccgcactccggcgcggagctggggatcttctacatcgcgctgtacatgatcgcgttcggcaacggcgggtaccagcccaacgtcgccaccttcggcgccgaccagttcgacggcgaggacccggccgagtcgcactccaaggtatccttcttcagctacttctacctggcgctcaacctcggctcgctcttctccaacaccttcctcagcttcctcgaggacgagggcaactgggcgctcggcttctgggtctccaccgccgccgcggccaccgcgctgctgctgttcctcggcggcacgctccgctaccggtacatccgccccagcggcaacccggttggcaggatcttccaggtcgcgttcgccgcgtgcaggaactggaaggccggcgagtcgccgggcgccgtgacactctacgagagcgacgagaaggcggattccggtgggaggaagctcctgcacacggaaggtttcaggttcttggaccgtgcggcggtggtgggcgctaacccgaagcttggcacgtgcacccaaccgcgtgacccctggaagctgtgcacggtgacgcaggtggaggaggtgaagagcatcctgcggctcctccccatctggctctgcaccatcctctattcggtcgtgttcacgcagatggcgtcgctgttcgtcgtgcagggcgccgcgatgcgccgcaccacccggttcccgggcttctccgtcccgccctccagcatgtcggccttcgacatcctcaccgtcgccaccaccatcttcctgtaccgccgggccgtctgcccgctcgtgtcgcggctcacgggccgccgcaccggcccaaccgagctgcagaggatgggcctcggcctggtgctcggcgcgatggccatggccaccgccggcacggtcgagcacttcaggaaggccggcgccaccacggcgatgagcagcgacctgcacatcatgtggcaggtgccgcagtacgcgctgatcggcgtgtcggaggtgatgatgtacgtcggccagctcgagttcttcaacggggagatgcccgacgcgctcaagagcttcgggagcgcgctctgcatgatgtccatgtcgctcggcaactacttcagcgacgtcatcgtgagcgcggtgaccaaggccaccgccgtgcgcggccgccccggctggatccccgccgaccttaacgagggccacctcgacaagttcttcttcctgctcgccgtgctggccgtcgcggacttcgccgtgtacctcgtgtgcgcgagccggtacaggagtggcacggtggacgtcgaccggagcgacggggaggaggaggatggcgtggccggcaggcagatggcggcaacggtgtaa
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| Protein seq | MKMRVIVVEGDETSNAPKDVCCEYTLDGSVDIKGSPAVKGKSGGWLAGGLILLNQGLATLAFFGVNVNLVLFLTRVLQQSNGDAANNVSKWTGTVYMFSLIGAFLSDSYWGRYKTCAIFQAIFVLGLALLSLSSRLYLIRPVGCGTEHVPCEPHSGAELGIFYIALYMIAFGNGGYQPNVATFGADQFDGEDPAESHSKVSFFSYFYLALNLGSLFSNTFLSFLEDEGNWALGFWVSTAAAATALLLFLGGTLRYRYIRPSGNPVGRIFQVAFAACRNWKAGESPGAVTLYESDEKADSGGRKLLHTEGFRFLDRAAVVGANPKLGTCTQPRDPWKLCTVTQVEEVKSILRLLPIWLCTILYSVVFTQMASLFVVQGAAMRRTTRFPGFSVPPSSMSAFDILTVATTIFLYRRAVCPLVSRLTGRRTGPTELQRMGLGLVLGAMAMATAGTVEHFRKAGATTAMSSDLHIMWQVPQYALIGVSEVMMYVGQLEFFNGEMPDALKSFGSALCMMSMSLGNYFSDVIVSAVTKATAVRGRPGWIPADLNEGHLDKFFFLLAVLAVADFAVYLVCASRYRSGTVDVDRSDGEEEDGVAGRQMAATV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0029410 | OsNaBo_02g0029410.02 | Chr02 | 30285739 | 30289382 | - | NAM | ||
| CDS seq | atgtctggcaacgacggagacatgaagatgagggtgatcgtcgtcgaaggcgatgagacgagtaacgccccgaaggatgtatgctgcgagtacaccctcgatggctccgtggatatcaagggctcaccggcggtgaagggcaagtccggcggatggctcgccggcggccttattcttctgaaccagggtctggcaaccctggcgttcttcggggtaaacgtgaacctggtgttgttcctgacgagggtgctgcagcagagcaacggcgacgccgccaacaacgtgagcaaatggaccggcacggtttacatgttctccctcatcggcgccttcctcagcgactcctactggggccgctacaagacctgcgccatattccaggccatctttgtccttggcctcgcgctgctgtccctgtcgtcgcggctgtacctgatcaggccggtcgggtgcggcacggagcacgtgccctgcgagccgcactccggcgcggagctggggatcttctacatcgcgctgtacatgatcgcgttcggcaacggcgggtaccagcccaacgtcgccaccttcggcgccgaccagttcgacggcgaggacccggccgagtcgcactccaaggtatccttcttcagctacttctacctggcgctcaacctcggctcgctcttctccaacaccttcctcagcttcctcgaggacgagggcaactgggcgctcggcttctgggtctccaccgccgccgcggccaccgcgctgctgctgttcctcggcggcacgctccgctaccggtacatccgccccagcggcaacccggttggcaggatcttccaggtcgcgttcgccgcgtgcaggaactggaaggccggcgagtcgccgggcgccgtgacactctacgagagcgacgagaaggcggattccggtgggaggaagctcctgcacacggaaggtttcaggttcttggaccgtgcggcggtggtgggcgctaacccgaagcttggcacgtgcacccaaccgcgtgacccctggaagctgtgcacggtgacgcaggtggaggaggtgaagagcatcctgcggctcctccccatctggctctgcaccatcctctattcggtcgtgttcacgcagatggcgtcgctgttcgtcgtgcagggcgccgcgatgcgccgcaccacccggttcccgggcttctccgtcccgccctccagcatgtcggccttcgacatcctcaccgtcgccaccaccatcttcctgtaccgccgggccgtctgcccgctcgtgtcgcggctcacgggccgccgcaccggcccaaccgagctgcagaggatgggcctcggcctggtgctcggcgcgatggccatggccaccgccggcacggtcgagcacttcaggaaggccggcgccaccacggcgatgagcagcgacctgcacatcatgtggcaggtgccgcagtacgcgctgatcggcgtgtcggaggtgatgatgtacgtcggccagctcgagttcttcaacggggagatgcccgacgcgctcaagagcttcgggagcgcgctctgcatgatgtccatgtcgctcggcaactacttcagcgacgtcatcgtgagcgcggtgaccaaggccaccgccgtgcgcggccgccccggctggatccccgccgaccttaacgagggccacctcgacaagttcttcttcctgctcgccgtgctggccgtcgcggacttcgccgtgtacctcgtgtgcgcgagccggtacaggagtggcacggtggacgtcgaccggagcgacggggaggaggaggatggcgtggccggcaggcagatggcggcaacggtgtaa
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| Protein seq | MSGNDGDMKMRVIVVEGDETSNAPKDVCCEYTLDGSVDIKGSPAVKGKSGGWLAGGLILLNQGLATLAFFGVNVNLVLFLTRVLQQSNGDAANNVSKWTGTVYMFSLIGAFLSDSYWGRYKTCAIFQAIFVLGLALLSLSSRLYLIRPVGCGTEHVPCEPHSGAELGIFYIALYMIAFGNGGYQPNVATFGADQFDGEDPAESHSKVSFFSYFYLALNLGSLFSNTFLSFLEDEGNWALGFWVSTAAAATALLLFLGGTLRYRYIRPSGNPVGRIFQVAFAACRNWKAGESPGAVTLYESDEKADSGGRKLLHTEGFRFLDRAAVVGANPKLGTCTQPRDPWKLCTVTQVEEVKSILRLLPIWLCTILYSVVFTQMASLFVVQGAAMRRTTRFPGFSVPPSSMSAFDILTVATTIFLYRRAVCPLVSRLTGRRTGPTELQRMGLGLVLGAMAMATAGTVEHFRKAGATTAMSSDLHIMWQVPQYALIGVSEVMMYVGQLEFFNGEMPDALKSFGSALCMMSMSLGNYFSDVIVSAVTKATAVRGRPGWIPADLNEGHLDKFFFLLAVLAVADFAVYLVCASRYRSGTVDVDRSDGEEEDGVAGRQMAATV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0029410 | OsNaBo_02g0029410.03 | Chr02 | 30285740 | 30289438 | - | IsoSeq | ||
| CDS seq | atgataggacatgcacggggggatagtgacacgatactaaagaataagaggtcgcctacagatgcagtattgttctatcatgtacgcctgtgtttcatcgtttcacatttttctggccaatgtaacaagagaacgcgactgttactgaccactcatgttttttcttctgcaagagtgactgatcaatgcttctgtgcattgccgactgtt
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| Protein seq | MIGHARGDSDTILKNKRSPTDAVLFYHVRLCFIVSHFSGQCNKRTRLLLTTHVFSSARVTDQCFCALPTV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr02 | 30288890 | 30289382 | - | OsNaBo_02g0029410.01 | OsNaBo_02g0029410.02,OsNaBo_02g0029410.01 | All |
| A5 | Chr02 | 30289064 | 30289263 | - | OsNaBo_02g0029410.03 | OsNaBo_02g0029410.02,OsNaBo_02g0029410.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 7.766305 | 13.236315 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0689900 | RBH | 0.109139 | 0.335774 | 6.701357 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g46460 | RBH | 0.064873 | 0.198505 | 1.615830 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0689900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0029660 | RBH | 0.0 | 1.031502 | 6.295284 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0029730 | RBH | 0.000000 | 0.422724 | 3.439754 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0029590 | RBH | 0.0 | 0.0 | 10.837815 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0029180 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0029400 | RBH | 0.817534 | 4.719262 | 14.652221 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0460100 | RBH | 2.2023115 | 55.3580745 | 3.9440735 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0029200 | RBH | 0.000000 | 0.000000 | 1.475054 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0488000 | RBH | 3.850579 | 16.0198505 | 0.9330705 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0029510 | RBH | 0.095645 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0029250 | RBH | 0.212721 | 2.371095 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0029550 | RBH | 0.0 | 4.937428 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0029400 | RBH | 0.0 | 0.0 | 2.139965 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0029080 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G029650 | RBH | 0.000000 | 0.0 | 1.650626 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0024510 | SBH | 0.0 | 3.526868 | 0.000000 |
