Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0029090 | OGI:02079160 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:30041193-30044154 | ||||||||
| Gene Symbol | OsPP2C25, PP2C25, OsPP36 | ||||||||||
| DNA seq | agatcggtggcgtccgattgttttaatgggacgctgcggaattacgttatcctgcttacgaataaaaatccaatacctcagtgTttacataaaaaaatataTtttttgttttgctcagattaccaaaaattgggaattttcacatcagtatccatctgttgtgatgtagtacgtagaagaaaaacagcatgttgtgattattccgagcatattgcaagcatgaaaccaactttttagtacctgaaataggtaaatgtacaaaacaaaaaccaagttgaaagcaatgcttgctctagcgtaaaactctgatgctactgcaatgcagggcacaaaacctgagctgctaggtcaccatatcatgaaatagcatcgaatcctgaaattctcgagggacctactgagtcgacaaacccacggactgaaagttcaggaacagaaacatttttctcctgaagtaactcatggtcgatgtaaacaacgacgactgtaatgtcgtcatggaagaagcgccgcaccccTttttcgactttcttaagatcaacaaacctcatttctcgcttccgtgcagcttctttcaaagctgtgtttactagcctctttgcaattccctaccaaagttatggaaattagatttagcacctttccaagtaatcagcctaggcattgcgggatagccccacaaacaaagaaaaacaagcaacgacacatgtaagtaaaggtctgaagacatactgctcgtggatttttgtagacgatgtcaacagcttgttggtttgttaagtgctcccaaagaccatcggatgcaaaaataacaaattgatcttgcagagaaagaactcttgtgcagatagatggctctgctgttagaacaggtcggcgaagaggctcagaaaggcggaagcgagttatggatggatcaagagcaaattcacgcctctttaaatatgcatcacctatagtccttgaaacctggtaagtaaatcacaaaatgtgacaatagttttacatcaagtacctagtttgcatatgcggaaaatcttggtaatgtactgctcaacatgtttgggccatcattggggaatctaaatgacacggcagtatttcttgttctcttactaccaaaataaataacatgatcaccttcacaatctcttgtaaactacaagaaacacAaaatccttctaaagcacaaactttaatttctatgatttgttgccctctacccctttacttggctcctctaatgggttgttgtgtaacaagtgaatatggtccaatcattaccaaattaatatacaatcacaaccatccttgaaaccatattatagttgtaatagttactcaataactgttgcttaccaacctggattatgccttttatgcgccaaacgccatgcttcagaacaacaatttgtgaatcatcgggatgacgagaaataagttcctgcctcacttcctccttacaagcattatgatcccttgtaatttgctcagcagtaatcttgtttgttctacccaaatagccaacaactgccctagaatcacctaaattagccacatatagtacccctctccatatgataccaacaagacaacaagatccaactgcagctatcataggctttaaaaactgcgttctccgaacaagtgtcaagaaaccttcttcggtagcagaaaatgcccctcgaacaacttcctctgatactgtttcactttctcgggcaagtcctagaaatataggaaaggttgagcagtcattttggtgcactgaacaatttcggttgagatatgcttgccatttattaacgacaaggataaggtcacatcatgcagtcagtggatacacttactcagtagcatctcacgtaaatcaagtcagtctgtaagtaaaagacaacattaagatgttgaacacgacaagaaactacagtacctactagtaatctgttattgcaaaggaccaagaatattgatagcttgtccaatgatcagattccactcagtcactggtaagagcattgcgttgtccattgcactgctcatgaaacaacagcatactcgatgagtggaatgtataccaacaagaattgcatccagcaaagagcaatcaacaaaggtaactccaatgattcagaataattacagaaccaaaaaactaataaaggaaatgctactgctcagtgcatagccaacaggtgcatcatgaagcaactaaagagtaaaaccacacaaaattcattcatcaccacctacaagttgaaactaaactaagccatgaagaattgagattaatgaactggagtggattctattgcaagaagaacagtataaggaagcgactacttacgtatcaggtgtgcgaagaggtgatcagatatgaagcgagcagcatcggcaccgccgtggccgtcgtagacgccgacgaaggtggcggcggagcccgtctcgacctggctatggtcttccaacgcctcgttggcctgcacgacggcaaaggagaactcacccgccgcgtgacgccccaggtcccgcgaccacagcaggccgtcggcgacgccgccgccattatcgccgccatcttcatccttcctcgtacgcgcgtacctccgggccgggcccaagcacgcggacgcaatcctcaacaaccacgagaacatccctcatttcccttctttccctcctctcgaaagaagtcgcctttggaaccctaaaggaccaagaacgcccaagaacaaacttgaacaccctaagtgacAaaaaggattaGgtttctggaggactatcccaaatttaatttctagaaatcgaaaaatagaacgatttgtagttcaaTtatacctgtcgttgcacttgcacctcaccagaagaatcacagattgcaagtgaaattaaatctggaattgggggggggggggggggggttccggggttaatcaccaccacacatcccccgagaccagcc
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| CDS seq | atgttctcgtggttgttgaggattgcgtccgcgtgcttgggcccggcccggaggtacgcgcgtacgaggaaggatgaagatggcggcgataatggcggcggcgtcgccgacggcctgctgtggtcgcgggacctggggcgtcacgcggcgggtgagttctcctttgccgtcgtgcaggccaacgaggcgttggaagaccatagccaggtcgagacgggctccgccgccaccttcgtcggcgtctacgacggccacggcggtgccgatgctgctcgcttcatatctgatcacctcttcgcacacctgatacgacttgcccgagaaagtgaaacagtatcagaggaagttgttcgaggggcattttctgctaccgaagaaggtttcttgacacttgttcggagaacgcagtttttaaagcctatgatagctgcagttggatcttgttgtcttgttggtatcatatggagaggggtactatatgtggctaatttaggtgattctagggcagttgttggctatttgggtagaacaaacaagattactgctgagcaaattacaagggatcataatgcttgtaaggaggaagtgaggcaggaacttatttctcgtcatcccgatgattcacaaattgttgttctgaagcatggcgtttggcgcataaaaggcataatccaggtttcaaggactataggtgatgcatatttaaagaggcgtgaatttgctcttgatccatccataactcgcttccgcctttctgagcctcttcgccgacctgttctaacagcagagccatctatctgcacaagagttctttctctgcaagatcaatttgttatttttgcatccgatggtctttgggagcacttaacaaaccaacaagctgttgacatcgtctacaaaaatccacgagcaggaattgcaaagaggctagtaaacacagctttgaaagaagctgcacggaagcgagaaatgaggtttgttgatcttaagaaagtcgaaaaAggggtgcggcgcttcttccatgacgacattacagtcgtcgttgtttacatcgaccatgagttacttcaggagaaaaatgtttctgttcctgaactttcagtccgtgggtttgtcgactcagtaggtccctcgagaatttcaggattcgatgctatttcatga
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| Protein seq | MFSWLLRIASACLGPARRYARTRKDEDGGDNGGGVADGLLWSRDLGRHAAGEFSFAVVQANEALEDHSQVETGSAATFVGVYDGHGGADAARFISDHLFAHLIRLARESETVSEEVVRGAFSATEEGFLTLVRRTQFLKPMIAAVGSCCLVGIIWRGVLYVANLGDSRAVVGYLGRTNKITAEQITRDHNACKEEVRQELISRHPDDSQIVVLKHGVWRIKGIIQVSRTIGDAYLKRREFALDPSITRFRLSEPLRRPVLTAEPSICTRVLSLQDQFVIFASDGLWEHLTNQQAVDIVYKNPRAGIAKRLVNTALKEAARKREMRFVDLKKVEKGVRRFFHDDITVVVVYIDHELLQEKNVSVPELSVRGFVDSVGPSRISGFDAIS |
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| Function | Probable protein phosphatase 2C 25 [UniProtKB/Swiss-Prot:Q6ZHC8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0029090 | OsNaBo_02g0029090.01 | Chr02 | 30041193 | 30044154 | - | NAM | ||
| CDS seq | atgttctcgtggttgttgaggattgcgtccgcgtgcttgggcccggcccggaggtacgcgcgtacgaggaaggatgaagatggcggcgataatggcggcggcgtcgccgacggcctgctgtggtcgcgggacctggggcgtcacgcggcgggtgagttctcctttgccgtcgtgcaggccaacgaggcgttggaagaccatagccaggtcgagacgggctccgccgccaccttcgtcggcgtctacgacggccacggcggtgccgatgctgctcgcttcatatctgatcacctcttcgcacacctgatacgacttgcccgagaaagtgaaacagtatcagaggaagttgttcgaggggcattttctgctaccgaagaaggtttcttgacacttgttcggagaacgcagtttttaaagcctatgatagctgcagttggatcttgttgtcttgttggtatcatatggagaggggtactatatgtggctaatttaggtgattctagggcagttgttggctatttgggtagaacaaacaagattactgctgagcaaattacaagggatcataatgcttgtaaggaggaagtgaggcaggaacttatttctcgtcatcccgatgattcacaaattgttgttctgaagcatggcgtttggcgcataaaaggcataatccaggtttcaaggactataggtgatgcatatttaaagaggcgtgaatttgctcttgatccatccataactcgcttccgcctttctgagcctcttcgccgacctgttctaacagcagagccatctatctgcacaagagttctttctctgcaagatcaatttgttatttttgcatccgatggtctttgggagcacttaacaaaccaacaagctgttgacatcgtctacaaaaatccacgagcaggaattgcaaagaggctagtaaacacagctttgaaagaagctgcacggaagcgagaaatgaggtttgttgatcttaagaaagtcgaaaaAggggtgcggcgcttcttccatgacgacattacagtcgtcgttgtttacatcgaccatgagttacttcaggagaaaaatgtttctgttcctgaactttcagtccgtgggtttgtcgactcagtaggtccctcgagaatttcaggattcgatgctatttcatga
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| Protein seq | MFSWLLRIASACLGPARRYARTRKDEDGGDNGGGVADGLLWSRDLGRHAAGEFSFAVVQANEALEDHSQVETGSAATFVGVYDGHGGADAARFISDHLFAHLIRLARESETVSEEVVRGAFSATEEGFLTLVRRTQFLKPMIAAVGSCCLVGIIWRGVLYVANLGDSRAVVGYLGRTNKITAEQITRDHNACKEEVRQELISRHPDDSQIVVLKHGVWRIKGIIQVSRTIGDAYLKRREFALDPSITRFRLSEPLRRPVLTAEPSICTRVLSLQDQFVIFASDGLWEHLTNQQAVDIVYKNPRAGIAKRLVNTALKEAARKREMRFVDLKKVEKGVRRFFHDDITVVVVYIDHELLQEKNVSVPELSVRGFVDSVGPSRISGFDAIS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0029090 | OsNaBo_02g0029090.02 | Chr02 | 30041366 | 30044154 | - | NAM | ||
| CDS seq | atgttctcgtggttgttgaggattgcgtccgcgtgcttgggcccggcccggaggtacgcgcgtacgaggaaggatgaagatggcggcgataatggcggcggcgtcgccgacggcctgctgtggtcgcgggacctggggcgtcacgcggcgggtgagttctcctttgccgtcgtgcaggccaacgaggcgttggaagaccatagccaggtcgagacgggctccgccgccaccttcgtcggcgtctacgacggccacggcggtgccgatgctgctcgcttcatatctgatcacctcttcgcacacctgatacgacttgcccgagaaagtgaaacagtatcagaggaagttgttcgaggggcattttctgctaccgaagaaggtttcttgacacttgttcggagaacgcagtttttaaagcctatgatagctgcagttggatcttgttgtcttgttggtatcatatggagaggggtactatatgtggctaatttaggtgattctagggcagttgttggctatttgggtagaacaaacaagattactgctgagcaaattacaagggatcataatgcttgtaaggaggaagtgaggcaggaacttatttctcgtcatcccgatgattcacaaattgttgttctgaagcatggcgtttggcgcataaaaggcataatccaggtttcaaggactataggtgatgcatatttaaagaggcgtgaatttgctcttgatccatccataactcgcttccgcctttctgagcctcttcgccgacctgttctaacagcagagccatctatctgcacaagagttctttctctgcaagatcaatttgttatttttgcatccgatggtctttgggagcacttaacaaaccaacaagctgttgacatcgtctacaaaaatccacgagcaggaattgcaaagaggctagtaaacacagctttgaaagaagctgcacggaagcgagaaatgaggtttgttgatcttaagaaagtcgaaaaAggggtgcggcgcttcttccatgacgacattacagtcgtcgttgtttacatcgaccatgagttacttcaggagaaaaatgtttctgttcctgaactttcagtccgtgggtttgtcgactcagtaggtccctcgagaatttcaggattcgatgctatttcatga
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| Protein seq | MFSWLLRIASACLGPARRYARTRKDEDGGDNGGGVADGLLWSRDLGRHAAGEFSFAVVQANEALEDHSQVETGSAATFVGVYDGHGGADAARFISDHLFAHLIRLARESETVSEEVVRGAFSATEEGFLTLVRRTQFLKPMIAAVGSCCLVGIIWRGVLYVANLGDSRAVVGYLGRTNKITAEQITRDHNACKEEVRQELISRHPDDSQIVVLKHGVWRIKGIIQVSRTIGDAYLKRREFALDPSITRFRLSEPLRRPVLTAEPSICTRVLSLQDQFVIFASDGLWEHLTNQQAVDIVYKNPRAGIAKRLVNTALKEAARKREMRFVDLKKVEKGVRRFFHDDITVVVVYIDHELLQEKNVSVPELSVRGFVDSVGPSRISGFDAIS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 10.396537 | 1.716512 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0685600 | RBH | 0.000000 | 0.357086 | 2.023010 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g46080 | RBH | 0.000000 | 0.222773 | 0.485514 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0685600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0029350 | RBH | 0.115206 | 9.802443 | 0.961503 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0029410 | RBH | 0.0 | 1.950666 | 1.241562 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0029280 | RBH | 0.0 | 0.000000 | 3.462206 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0028870 | RBH | 0.0 | 0.084970 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0029060 | RBH | 1.271975 | 0.000000 | 2.215603 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0456400 | RBH | 1.491698 | 13.5762685 | 4.2702 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0028870 | RBH | 0.0 | 0.539001 | 0.684504 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0484100 | SBH | 1.1391665 | 6.6148175 | 3.4884885 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0029180 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0028930 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0029220 | RBH | 0.0 | 3.840777 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0029080 | RBH | 0.111342 | 0.945723 | 0.957243 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0028760 | RBH | 0.000000 | 1.688999 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G029320 | RBH | 0.157041 | 0.668505 | 1.245318 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0023740 | RBH | 0.0 | 1.076460 | 0.000000 |
