Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0028180 | OGI:02077030 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:29179026-29181504 | ||||||||
| Gene Symbol | RLCK82, OsRLCK82 | ||||||||||
| DNA seq | ctatctcactctcggagacgggtggccagcggccgggccagcccagtccgaccccggccgcggcgactggccgtaaccgtgcgcgccgccgccgccgccgccccgtgccgcgggacgcggggacgccgagccgggggcgccaccgccgctgccgcccctggacatggactcgatctcctcgaggacggcgacgacctccctcatggagggccggttcttgtggtcggcggcgaggcaccggagcgtgagctgcgccgcacgctgcgcgcccctggacgagtactgcccctcgaggcgcgggtccatgagccgcgccagcttccggcggtcggacaggaatggcttggcccagtccaccaggtggtgctgcccgctgggccgcccggcgtcgagcgcgcggagccccgtcaggagctccagcagcacgacgccgaagccgtacacgtcgctcttcacgtacaggtggcccgtcgccacgtactccggcgccgcgtagccgtaggtgcccatcacgcgggtcgtcacgtggctgctgccgccggccggcccgtccttggcgagcccgaagtcggagagcttcgcgtggaattgctgcacgtacgcatgatcaatccgcgaggaaaaggagatgatcgagttagacgacggcgtgtactctggcgggaggcggcagcgtgcagggcgttaccgtgtcgaggaggatgttggaggccttgaagtctcggtagatgacgtgcttctccgacgagtggaggaacgccagcccgcgggccgcgccgatggcgatgtgcagccggaggctccacgacagcggctgctgaggcgacgcgcttccgccctctggttgacacaaaaagattgtcatttttcagctctcgttctaccgttcagttacagtgtgttcagaaaaattctggTttgattttccgatgccagctttgcaatccaatagtgaagtaaattccattgtcattccaattccaacctggcaacccaattatatctatatatctatactcttcatatcaagctagcttttgatactctattcacctgtataaattatgcactatcagttgactctgttctcagaacatccactaatcccctctccatgtgaagcagaacaatgatctcaatttgtccccttgtgaccaccatcaggcatcgttaattagcagcccaagtcaagttgtcagctcttaataatcatggccataccgtcatggatctgaaagcaccatgaaaccttttgtcttaaagtttacttactgcgtggctcacttctgaagaggtggttctccaagctgccttgggccatgtactcgtacacaagcagtagctccttgtcctcccagcagtagcccagtagcctcaccaggttgggatgtgaaagtctccccagaaaattcacctcggactgcaaacaaattcgttaacgacacagtggaaaagccaaaaagaagaagagaaaaacaacagtcgcatcagcacccgacgtgccgaccactaaacatgcacactgcctactgacgaaccattgcatgaacattttaatatcaacaagatcaacaccatttcttcatcaatcacaaggtggcatcccattttgtcagcgaagaaagatttgactcatgcatctcagattatgacgggaacgcgtccatgcgtcggggaactaaggaccaatcgtaatttatgcttcgcatgagaatgtgatgagatcaagagggctaaatcatttagtcgcggattctacaaagttattgttcttttgatcatggtttatttgacgaaaagaaatatcacgcacctgccattcttgcacgccctgtaagctctccggatcgagcttcttgacggcgacggccatgccggagccgctccgcgcggggctcatggtcctctcgtccacccaccccttgtgcacccgcccgaacccgccctcgccgaggacggtgtccgccttgaagttcctcgtggcggccctgagctcggcgaacgtgaagatccggaggttgggcgcctccaggatcctcccctccgcgctggcgtcgccgccggcgttcgtccggcctccaccaccagccaccgatcgcccgccgccggtgcttgtggctgtggcctggctcggcaacttaccagttggtggccgccctgggctcatcgcgacgcgtgcgttgggctgcgcgatcgcgaccatgaccggtctcgccattgccgctgcaaaagagcaaaacccagcacacgaagtgcgtcagaactagagacgcagcaccaaaaccatgacaaaatggatttgttggttccagatcccgatgaacaaaataaatctcacgaatacaaagaaaacgtagtgatattgtaagcagagcatcgggatgtcgatattcatatatgtaccttgtggcagcgcatgacgggccatcaccttgacggcctccacctcgccgtcatcggagccgaagcaattccccat
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| CDS seq | atggggaattgcttcggctccgatgacggcgaggtggaggccgtcaaggtgatggcccgtcatgcgctgccacaagcggcaatggcgagaccggtcatggtcgcgatcgcgcagcccaacgcacgcgtcgcgatgagcccagggcggccaccaactggtaagttgccgagccaggccacagccacaagcaccggcggcgggcgatcggtggctggtggtggaggccggacgaacgccggcggcgacgccagcgcggaggggaggatcctggaggcgcccaacctccggatcttcacgttcgccgagctcagggccgccacgaggaacttcaaggcggacaccgtcctcggcgagggcgggttcgggcgggtgcacaaggggtgggtggacgagaggaccatgagccccgcgcggagcggctccggcatggccgtcgccgtcaagaagctcgatccggagagcttacagggcgtgcaagaatggcagtccgaggtgaattttctggggagactttcacatcccaacctggtgaggctactgggctactgctgggaggacaaggagctactgcttgtgtacgagtacatggcccaaggcagcttggagaaccacctcttcagaagtgagccacgcaagggcggaagcgcgtcgcctcagcagccgctgtcgtggagcctccggctgcacatcgccatcggcgcggcccgcgggctggcgttcctccactcgtcggagaagcacgtcatctaccgagacttcaaggcctccaacatcctcctcgacacgcaattccacgcgaagctctccgacttcgggctcgccaaggacgggccggccggcggcagcagccacgtgacgacccgcgtgatgggcacctacggctacgcggcgccggagtacgtggcgacgggccacctgtacgtgaagagcgacgtgtacggcttcggcgtcgtgctgctggagctcctgacggggctccgcgcgctcgacgccgggcggcccagcgggcagcaccacctggtggactgggccaagccattcctgtccgaccgccggaagctggcgcggctcatggacccgcgcctcgaggggcagtactcgtccaggggcgcgcagcgtgcggcgcagctcacgctccggtgcctcgccgccgaccacaagaaccggccctccatgagggaggtcgtcgccgtcctcgaggagatcgagtccatgtccaggggcggcagcggcggtggcgcccccggctcggcgtccccgcgtcccgcggcacggggcggcggcggcggcggcgcgcacggttacggccagtcgccgcggccggggtcggactgggctggcccggccgctggccacccgtctccgagagtgagatag
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| Protein seq | MGNCFGSDDGEVEAVKVMARHALPQAAMARPVMVAIAQPNARVAMSPGRPPTGKLPSQATATSTGGGRSVAGGGGRTNAGGDASAEGRILEAPNLRIFTFAELRAATRNFKADTVLGEGGFGRVHKGWVDERTMSPARSGSGMAVAVKKLDPESLQGVQEWQSEVNFLGRLSHPNLVRLLGYCWEDKELLLVYEYMAQGSLENHLFRSEPRKGGSASPQQPLSWSLRLHIAIGAARGLAFLHSSEKHVIYRDFKASNILLDTQFHAKLSDFGLAKDGPAGGSSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLLELLTGLRALDAGRPSGQHHLVDWAKPFLSDRRKLARLMDPRLEGQYSSRGAQRAAQLTLRCLAADHKNRPSMREVVAVLEEIESMSRGGSGGGAPGSASPRPAARGGGGGGAHGYGQSPRPGSDWAGPAAGHPSPRVR |
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| Function | Probable serine/threonine-protein kinase PIX13 [UniProtKB/Swiss-Prot:Q9SII6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0028180 | OsNaBo_02g0028180.01 | Chr02 | 29179026 | 29181504 | - | NAM | ||
| CDS seq | atggggaattgcttcggctccgatgacggcgaggtggaggccgtcaaggtgatggcccgtcatgcgctgccacaagcggcaatggcgagaccggtcatggtcgcgatcgcgcagcccaacgcacgcgtcgcgatgagcccagggcggccaccaactggtaagttgccgagccaggccacagccacaagcaccggcggcgggcgatcggtggctggtggtggaggccggacgaacgccggcggcgacgccagcgcggaggggaggatcctggaggcgcccaacctccggatcttcacgttcgccgagctcagggccgccacgaggaacttcaaggcggacaccgtcctcggcgagggcgggttcgggcgggtgcacaaggggtgggtggacgagaggaccatgagccccgcgcggagcggctccggcatggccgtcgccgtcaagaagctcgatccggagagcttacagggcgtgcaagaatggcagtccgaggtgaattttctggggagactttcacatcccaacctggtgaggctactgggctactgctgggaggacaaggagctactgcttgtgtacgagtacatggcccaaggcagcttggagaaccacctcttcagaagtgagccacgcaagggcggaagcgcgtcgcctcagcagccgctgtcgtggagcctccggctgcacatcgccatcggcgcggcccgcgggctggcgttcctccactcgtcggagaagcacgtcatctaccgagacttcaaggcctccaacatcctcctcgacacgcaattccacgcgaagctctccgacttcgggctcgccaaggacgggccggccggcggcagcagccacgtgacgacccgcgtgatgggcacctacggctacgcggcgccggagtacgtggcgacgggccacctgtacgtgaagagcgacgtgtacggcttcggcgtcgtgctgctggagctcctgacggggctccgcgcgctcgacgccgggcggcccagcgggcagcaccacctggtggactgggccaagccattcctgtccgaccgccggaagctggcgcggctcatggacccgcgcctcgaggggcagtactcgtccaggggcgcgcagcgtgcggcgcagctcacgctccggtgcctcgccgccgaccacaagaaccggccctccatgagggaggtcgtcgccgtcctcgaggagatcgagtccatgtccaggggcggcagcggcggtggcgcccccggctcggcgtccccgcgtcccgcggcacggggcggcggcggcggcggcgcgcacggttacggccagtcgccgcggccggggtcggactgggctggcccggccgctggccacccgtctccgagagtgagatag
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| Protein seq | MGNCFGSDDGEVEAVKVMARHALPQAAMARPVMVAIAQPNARVAMSPGRPPTGKLPSQATATSTGGGRSVAGGGGRTNAGGDASAEGRILEAPNLRIFTFAELRAATRNFKADTVLGEGGFGRVHKGWVDERTMSPARSGSGMAVAVKKLDPESLQGVQEWQSEVNFLGRLSHPNLVRLLGYCWEDKELLLVYEYMAQGSLENHLFRSEPRKGGSASPQQPLSWSLRLHIAIGAARGLAFLHSSEKHVIYRDFKASNILLDTQFHAKLSDFGLAKDGPAGGSSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLLELLTGLRALDAGRPSGQHHLVDWAKPFLSDRRKLARLMDPRLEGQYSSRGAQRAAQLTLRCLAADHKNRPSMREVVAVLEEIESMSRGGSGGGAPGSASPRPAARGGGGGGAHGYGQSPRPGSDWAGPAAGHPSPRVR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 2.676385 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0670100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g44920 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0670100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0028440 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0028530 | RBH | 0.0 | 0.646504 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0028370 | RBH | 0.0 | 5.240424 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0027990 | RBH | 0.0 | 0.033333 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0028130 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0442100 | RBH | 0.094494 | 0.446231 | 0.5159545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0027940 | RBH | 0.0 | 0.061558 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0470200 | RBH | 0.409606 | 0.197086 | 0.382887 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0028270 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0027980 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0028280 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0028150 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0027840 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G028410 | RBH | 0.0 | 0.643133 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0022400 | RBH | 0.0 | 0.0 | 0.0 |
