Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0025420 | OGI:01011440 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:26816734-26820236 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcattgcatcttaaatgtctgcacatctttgttagcaatcttagccacctccacagtcttcctattcagcattacatgtctgTaactcctcgattgtgaagcatcgacatcatctttgtacccatgtagatgaggtggtatagtatcccgagcatccttcgtccatcttttcagtatatacctctctggaattcttgacaaaccatactgaacaagtAcctaaagggacaaaccaatgcattacttcaaaaagccaaacactaccgaacatatagtacgacccaatgaaaataaatgtttagacagtagaaaaacaatacccttaagatgtggctgcacagaatccccttatgctcaaacatcttgcaaacgcatgaaaattcctctctttccaaatcacaagacacctgatattcttcctaaggatgattcttgcgagttcatccgtacaacttgcacagtgctttcgtcctccccaggtttcaccatgtaagatagactatcggttaactcctcagagaacAattggaaaacagccctagtatatacttgggatgcgtgaatctctatcggtgaccttgttttaatttcaaccttgtcctgcaccaagcgacaccaaatgttgattacacatatccataaaaagaggtcaacaaacctatcacagtggatacttacattactggtttggaattcctccgagtcctctttttgcagcttctcattgaaaaaccggtcgtacctcttaacaaagccattcatagagctagagggtgacacaaacatcttaaacacatggtttgcagactcacttctctgtgtagtagtcatcccagcaagaacctatggaaaaatatacaaatgcccatttacgccttatgtccccatatgtgacgcaagtaaacacttttttccagattataatctctaatcagtttgtgccaagccgcaacaaactcctcctctgttagtgtctgcgtaagaaccttatgaaatgctttcttgaatgtatgacgcttggagtatatgttccccataaattcctttgctttcttcagtacatgccacttgcacacacgatgagatgtattgggaaatactattctaatggcagctgccatggaaggacaattgtctgcaaaattaaggacaataataagcatccaatgaataaccatcatatacttaaaatagtaaagtataacgaatcattccaaattataaattcggccaaatactcacatacctgttaatatccaataggaaccttcccatttatgcactctttgaatgtattgataccatgtaaatgattcttcagtctcttctctaagcagggcacaaccaaagaaggtgctctgaaattgattgcttacaccaacaaatggtgcaaagggcatattatacttgtttgttttgtaggtagtatcaaatgtgatgacacatcaccaaaatgctcaaagttcaatctggacacagcatgagaccaaaatatttcttcacacggcaagcctcgtcaacttgtatactataaaaagaaattcttgctccttttttgcaaatcattcaagacatcaagtgttttttgcatgtcatcgctgctctcatcccgcctaatgcataagctagcctatcatagcttttcctcgtgaatggaacatggaggtccgccatgcatcccagacaacataccatacatatttgtaagactcatactactggctaccatctcttcaataataccacgtcccctcatctatttgattgtgcgactgataattcttagtactcctacactttttttcataggatggttgtgcgcagaaacaacctttgttactgaccagccactaccagctccagacctatttatcttcatcattgctgggcacccaattcgaacggaaggcttcttggtttttggttcctcccctgcataaaagatttcgaaattaacacatagtacgtcaagtctttatttaggtaaatttctgctactaagatattgttacataatgtaatgtacgtgggagaacaacatactttgccgcattgttctctgctttttagtattcttgcgatctttgtccagtctatcccaaatcctttactaaacagcataaacattataaaattataggcatccctctcagtcttaaatctttgtcccagcatcggagtaagaatttgaggatcagcatactcaagaggtatgacagcactgctatcaacattatctaccaccattctgaaaagaaaatgtacaatcatttcagaaataccaccaatatcctggctcaaaaaaatcgtaaaaatccgtaacatgctgatacaaacatttccatcggtatcccagctccttctttttcatatgggtttccttctgtccaatccagtgaagggaccaaatttctgtattggagacactatatttaaaaatagcatatacactactaactgaaatgtatttaaaaaacaacctaatttataatcagtacttactgcaaatttaaaaaatatatgttgtacgactaacaaaaaatatgggagctttgttctgaacttttgttagatgattgtattactcattttttaaaatggaggggttctttctgatttatgttgaattatagtatgtactgaattttctatgggtacgtactgaatttctctagacgatagcatatactgcattttccacatgtatactaaatcttccatagtgattcgttatgaactttgatacgcaccagtatttactgaatttcacatatatactgaattttttctatggaggctatgtactgaacttgttatacgacagcatatagtatgttctgaattttctgtgcaacatactgaactcctctgcaatatagcacatactgaacttttctatgtgatacatactgaactttcctaaagatagcatatactgaactttctcatgtgcacatactgaacatttctatgtagtatatactgctttaaagtgaatgctcagctgacacctagccatgcacatactgtctctggaattccatgccctgaatcatgtgagccaacccgcgaccaccgtcctcctccattgctaacacgcttcataacacaatcaagatgtttcagttctctggctaccatttacagagttttaaattcacggaagctacgatccaaccttgactgaccaccatccggttgtgaatcatggacagattgactaataccatctactatgtccatggtagggttgcatcgtccataagatttccctgaattgatgatttagaatgctcaagttcacacggcgaattcagagaaaaaaaaccagcggcacatactgaaaaataaatcactgaaacagaacaacataccttgatccatccgtaccatcagaatgtctgtggttcttcacttgtttttatatccatcctaatcagcaccgccgcgcggcggcgtatcctcgagctggactacggaggtccaaccaagttcctgcagcc
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| CDS seq | atgaggggacgtggtattattgaagagatggtagccagtagtatgagtcttacaaatatgtatgacaattgtccttccatggcagctgccattagaatagtatttcccaatacatctcatcgtgtgtgcaagtggcatgtactgaagaaagcaaaggaatttatggggaacatatactccaagcgtcatacattcaagaaagcatttcataaggttcttgctgggatgactactacacagagaagtgagtctgcaaaccatgtgtttaagatgtttgtgtcaccctctagctctatgaatggctttgttaagaggtacgaccggtttttcaatgagaagctgcaaaaagaggactcggaggaattccaaaccagtaatgacaaggttgaaattaaaacaaggtcaccgatagagattcacgcatcccaagtatatactagggctgttttccaatTgttctctgaggagttaaccgatagtctatcttacatggtgaaacctggggaggacgaaagcactgtgcaagttgTacttgttcagtatggtttgtcaagaattccagagaggtatatactgaaaagatggacgaaggatgctcgggatactataccacctcatctacatgggtacaaagatgatgtcgatgcttcacaatcgaggagttAcagacatgtaatgctgaataggaagactgtggaggtggctaagattgctaacaaagatgtgcagacatttaagatgcaatga
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| Protein seq | MRGRGIIEEMVASSMSLTNMYDNCPSMAAAIRIVFPNTSHRVCKWHVLKKAKEFMGNIYSKRHTFKKAFHKVLAGMTTTQRSESANHVFKMFVSPSSSMNGFVKRYDRFFNEKLQKEDSEEFQTSNDKVEIKTRSPIEIHASQVYTRAVFQLFSEELTDSLSYMVKPGEDESTVQVVLVQYGLSRIPERYILKRWTKDARDTIPPHLHGYKDDVDASQSRSYRHVMLNRKTVEVAKIANKDVQTFKMQ |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0025420 | OsNaBo_02g0025420.01 | Chr02 | 26818490 | 26820236 | - | NAM | ||
| CDS seq | atggaggaggacggtggtcgcgggttggctcacatgattcagggcatggaattccagagacaaaatttggtcccttcactggattggacagaaggaaacccatatgaaaaagaaggagctgggataccgatggaaataatggtggtagataatgttgatagcagtgctgtcatacctcttgagtatgctgatcctcaaattcttactccgatgctgggacaaagatttaagactgagagggatgcctataattttataatgatttgggatagactggacaaagatcgcaagaatactaaaaagcagagaacaatgcggcaaagggaggaaccaaaaaccaagaagccttccgttcgaattgggtgcccagcaatgatgaagataaataggtctggagctggtagtggctggtcagtaacaaaggttgtttctgcgcacaaccatcctatgaaaaaaagtgtaggagtactaagaattatcagtcgcacaatcaaatag
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| Protein seq | MEEDGGRGLAHMIQGMEFQRQNLVPSLDWTEGNPYEKEGAGIPMEIMVVDNVDSSAVIPLEYADPQILTPMLGQRFKTERDAYNFIMIWDRLDKDRKNTKKQRTMRQREEPKTKKPSVRIGCPAMMKINRSGAGSGWSVTKVVSAHNHPMKKSVGVLRIISRTIK |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0025420 | OsNaBo_02g0025420.02 | Chr02 | 26816734 | 26818489 | - | NAM | ||
| CDS seq | atgaggggacgtggtattattgaagagatggtagccagtagtatgagtcttacaaatatgtatgacaattgtccttccatggcagctgccattagaatagtatttcccaatacatctcatcgtgtgtgcaagtggcatgtactgaagaaagcaaaggaatttatggggaacatatactccaagcgtcatacattcaagaaagcatttcataaggttcttgctgggatgactactacacagagaagtgagtctgcaaaccatgtgtttaagatgtttgtgtcaccctctagctctatgaatggctttgttaagaggtacgaccggtttttcaatgagaagctgcaaaaagaggactcggaggaattccaaaccagtaatgacaaggttgaaattaaaacaaggtcaccgatagagattcacgcatcccaagtatatactagggctgttttccaatTgttctctgaggagttaaccgatagtctatcttacatggtgaaacctggggaggacgaaagcactgtgcaagttgTacttgttcagtatggtttgtcaagaattccagagaggtatatactgaaaagatggacgaaggatgctcgggatactataccacctcatctacatgggtacaaagatgatgtcgatgcttcacaatcgaggagttAcagacatgtaatgctgaataggaagactgtggaggtggctaagattgctaacaaagatgtgcagacatttaagatgcaatga
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| Protein seq | MRGRGIIEEMVASSMSLTNMYDNCPSMAAAIRIVFPNTSHRVCKWHVLKKAKEFMGNIYSKRHTFKKAFHKVLAGMTTTQRSESANHVFKMFVSPSSSMNGFVKRYDRFFNEKLQKEDSEEFQTSNDKVEIKTRSPIEIHASQVYTRAVFQLFSEELTDSLSYMVKPGEDESTVQVVLVQYGLSRIPERYILKRWTKDARDTIPPHLHGYKDDVDASQSRSYRHVMLNRKTVEVAKIANKDVQTFKMQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0542200 | SBH | 0.863786 | 1.080612 | 2.627480 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g40950 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0542200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0025580 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025730 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0019050 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0018800 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0025250 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0296400 | SBH | 0.00389 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0018490 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0418100 | SBH | 7.160331 | 10.378751 | 14.12516 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0019020 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0018740 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0019160 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0018890 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0018670 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G019090 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
