Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0022310 | OGI:02063520 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:23947687-23954857 | ||||||||
| Gene Symbol | MADS27, OsMADS27, MADS-27a, OsSTA66, OsMADS27a | ||||||||||
| DNA seq | ccaaaccacaattaatcccatcaaattcccctataagctttggcctctttgcagctttcttcttccagctcccagctagatcccctcttgccttctttggcacattcgttcttgctctctgctgtggattatttgcctccggctccggccaatcggcggcggcgtggcgcgggcagatcgatcgatctcatcggcggcgggattgcctgttctagctatagcttgatagcttagctagcttggtcatttctggtgagagatcgatcgagatagcggcgaagaagatggggagggggaagattgtgatccgccggatcgacaactcgacgagccggcaggtgacgttctcgaagcggaggaacgggatcttcaagaaggccaaggagctggccatcctctgcgacgccgaggtcggcctcatgatcttctccagcaccggccgcctctacgagtactccagcaccaggtctgttctgttcttcatatcatcgatcatccgtcctctctccttgcttgcttgttgcttgttgatgattaacttttgcttgaagataatatttgttattgattcttgttcttttcctgcgcttagctttttctgctttaatttcctagtattttgatatttagccagggagccagcatgggccatggccagctcttctctgtgcagtcagaaagatgcataaactatgcaaaaactgccctcttattgagaaaagaaataaactatgcaaaaaccgtatatagacattcatgcacctaactaaaaaatggttatcacatatatataagagctgcacggagtaatgattatatatgtttttgtctttatttttcttttgaaggagatctgtatgtgtagttcttctatctaatttatcttttgttttgcatatgtataTtttttttttcttccttgttcttgactactaattaattaattaattgcaaaactaaacattgtctttggtttgtattaatttgtatattacttggccgtacgttatcatgtgatcaacatatatgcattgcagaaaccatcaaatgaaagaatatgtggtgaatggcagctaaaaaaatgatctagggtttcgtgataatatgaagtgtatagtgtgtgtctctaaatgaaaatttgtattacttcgatctctcagctgtgaataattgcgtgggtctatacatctcaactaccaattaggaggtgtgttagatggatgcttatttcttggtcaaaaaataacacataaaaatcacatgattcacatatatgatgtgtaatcttaattaacagattaaattttgttacttaccgttatatatatgcaaatatgcagcatgaagtcagttatagatcggtatggcaagtccaaggatgagcagcaagccgtcgcaaatcccaactcggagcttaaggtttggttcccaagattgattcttacaatttatacagtttgattattctcagatttaagtgagaaatatatccactctaaaaaaaattagatcatcctgaaagcaaatgccacagtggagtttagaagtaatacttagcaagctagcttgcatgcatcatagctcgaataatcacacactatatatttccattttgtccgccatatataggttcctaacttccaattacatatagacacagtagaacaccatttgttttaaatatagtccttgcgcaggagtgttgccattcgtgtaagtttcattaatttcaagggaaatatgtgtctcttttatggtaaattttggggagtggggccatGgggggagtatgtagcacactgaattttgatgaaataataacaagaataaaattatttgatcttttaatagatataggtgcacatattatttttgtgtgtgctagctttagatatttacaccattgcaacataaatatatattgcatatgtctcctggcaaactaattaaattgtctaaacacaatgttaatctacttatgttctatgtctatccaaaatgaccaacctctgattgagtatatatatacatggatagttcccaaaaaattgcaagtctgtttgtacacatttgttatggaaataataaactaagcaactaaataaacttaataatacattatcaactaaagaaatatcaaccatatatacgtaagacaatctatattatgcaaacaaataaagcaagcaaataatcaactgcataagatgaccatatctttcttggcaattaacagcgtggttttcataatgagtatattttaatcttagagattttatgactgatatgacttgattcatcttagcgtacttcacaccttatataatccctttttccattatagtgtattgtacagttttgttctgtgttatccaaaataatcaccttgccctagtgacgtatgaaaattgcctaacagttcaactttagttttagatttgtgaagaatgaaactaagtatctaattaagattaaaacatagataaaccaaacatggagcattgcatgaataattaaaacaaccttccttataaataaagtcattgtggtttgtcagcattttgattctaatctacctatattaattaaggaagtcgatcttacatgtagtctttgattagcgtggagctatcaatcctcgtggtcaatttttaatgcatggttgatatcatcttatatctttgatatcctactcaatgaaatctgataagacgaaaaaaatcaccaacaaattcacatgggataggggccaagacgattaaacgtacctttcgcatgagagaaaaacacattgtttatgatgtttatatagatcctgatgggcctgataaggtctggaaaaaagaactgggagtaaaaatgatctttaagatcacttaagattaatggtaaacatagataaaccaaacatggatataaacatcataacatgccgttgggcttgttaaccgatcatctttagtactggtttataattggtctgaaagatttatgatttgcctgaccgagtaaagatcggttctccagtagtaacttaaggacacgatcgcgaagtcagggaaattgaagtaataaaaagaagaatgattcatcatgttttgtttgaatatcgattttacaaccagtcctgattcctgaaaattataacttcattttaaaataaaattggatttgaaaaagttgattaacaaggatttatttggaaggagataagttaaaatcctagtaagaaggtgaaagttttattgtagtattatgtgagtcacaagctagtaatcatgctggttttaatcttcacaatcagtacattctgaaattcatgttaatttaaacattttcatacaatttgttccaatcgaaaagtaatatctactcagagcttcagttgagaataatttgaaacaaaatcaagcatatggtgtcaaaagaggtaaattcgggacttaggtcctgtttctttcagcttgggattattataatccagattattgggagtgagctgaaagaaacagacaacttattaaaatagcttattataatctgaagcctggcttattataatatgataagcttatttaggtgagctttttccaaattattgggtgaaaaattaccaccatgctaccccactccctctctagacttgcgaacccaataatctagactctaataatctaggaaagaaacaactaacggcttattctactatagattataataatctagtttatagtaatctgacttaataatttagattataataatcttaaattgaaagaaatagggccttaattaaggaagaagtgggcaaataaagaagctctgaccaaagccctacagggccacatacctagtacgaggtagttgggtcgaacaagtaaccaaattatatcttttagataaagaaacaagtaaccaaattatagttgtttaagatccatcaaacaagatgtaagtaagtagtatttgccttgggctgggtttttaggatgtcaatacagacttaccttgggctgggttgagtagtcgcaagtgcaacgggctgaaataaatttagggctttcagacttttgacccacctcaaattggcatgactctatctatcaaaaattgacttgacaggaaaaataaaagaacagatctccaccaaaatggaatcatgtactcgatacttacaaagagatgtgcattacaatcacatgcaaacttgggtagaaattatgaagaccagagtggcagctcatgtttttccacttaaacagaaatgaggagtaagtcctcctgtttgctcaactattcagagaagatacaaggagaACaaCacaaaaaaaaatataaataaaaatagaaatagaaagttcacagtacatgcaaaagaatagctaatcttttaacaaagaactctgttttgcaccatcttagcagcggtttttatgtggtcagtacggtagtcaatagtcaatgaattacacccctgcaatctaagagtaacaaacattcaaagaaaatgtcatgtgccttttttgtccgcaaaggtgaaggctgaacatgtgaggatacaaaaatagtgaaatactacatccgttcaaaaatgttactaactactacagaaagaaatattttataggactatgaatctagacaggaaatgcccaggttatattttgagacataggtggtacagtagtaaactacatgctcaagaaagcacctaggcactggttttcctttctcaaatagtaatccctacaaaccttgcattctgctgaatagggataagcagcttggaacgctcatcaaccaaggtttaagacactaactaggattctaggaatgcactaggtagcatgttaacagcagaaattaacttcataaaagctggaatttttcatttgcttgagaacagtcatacatctttttccttccaaaagtaaacatatattattcagtctcatttgatttacaaaagtacaaagctgagtagcatgggacaatgaacgttccgctaccaaagcacaggtgacaggaaaattatagtgctattctgatgaacaatcaactccaaaatttacaggatcactcactgggcattcctagagaaattcctgcaaacctacaaaacaaagaaaccaaggatcaagccatgaaactaacataatgcatttagaaattcataattcactactaagaattgtgactggcctcatgatcaactcAaaattgcccttccaagcaagcatgtcatgggtaataagagaaacattcagcagtggaagccaatacacaatgtagagacgacgtaatctgatcagagtaaacaacaatagatgatcaggatggactaaacagtttacatgtgcagccttcattataagaacactaggaacaattttcatacatattagatgttcgacttccttaccagactttactcatctagcaccttaccagactttactcaccttgctagatgttcatatgttgatgagttcatttgcaattgcctggtggcactagcatccatggaaataaatatatttttgttaatcaaaagatttagaagaaccattaagataatgtcaaccttgtcaaaacatgtacctgcctccatctagttttcatattataactgttgtaagcatcatgcttcaatattatctcatgccacaagagttttgttattaatcattgtgtttgttggtcagacatgtttattactttaattttgtcttgtgtgcctgtaattgaataactctaccctgctttctcacttgatagttttggcaaagggaggcagcaagcttgagacaacaactgcacaacttgcaagaaaatcatcggtatggtctgaaaagccctgcaaaatttccaagcatatattcattagaaacttgttggaaagagaagcgctagcatgtactatctgaaaccagcaagatagtaataaagacaaaagccaagaatcaatgccctacaagtaagcattatcatgtgcaagattacaagcacctaccaatcaacccaaatacttgagacaacaaggatactattaaacacaaataaaccaaatcagaactactctgctgtgaactcagtttccagttctaaGaaaaaaaaaatagatcctccatatcagtctatagatcagtcctatactcctattggtcagtattggtatcgctccctattgtatggtgcatgttgatcccataaatgactagaaactattgaaaggccattgatttcacacgcaagcatagagaacaagatattgcgaagccataattgctactaataacaagacaagaaaaaggtatcacatattggtttgctattataggcagttgatgggtgaagatctatctgggctgaatgttaaggaattgcaatctctagagaatcagctggaaataagtctacgtagtgtccgtacaaagaaggtcaacccacttatcatatttctcgttatgcattgatcatttataaaataaacttaactgacatggtgttactgttactgctgctgttttcaggaccacgtcttgattgatgaaattcatgaactgaatcggaaggtctctatagcattttagtttttgtaatcctccatgaaggatgtttattattattattattactttagtatactgactctacttggttgcagggaagtctagttcaccaagaaaacatggaattatacaagaagatcagtttaattcgtcaagaaaatgctgagttatataagaaggtagccagcatgttagataaagaaaacatagtgttgccaccaaacctgcttagcacatactgacttatattgtaacaatgttttagatctacgagactgaaggaccaagtgaagtcaatcgggattcaccaactccttacaactttgcagtaattgaaaaaacaaatgttcctgtgcaacttggactcagcacactaccacaacatagtgacgccgaacaatcagctgctcctaagctagggtaacacttagctctacgtattttcagtccatttgcaaatccaatcttcattggagtaacgaatgttcaaacacatgcaggttacagttgaatccatgaccagaaaaaaattgttttgctacacccttgtatgctgaagggatactatttgctgtcaagagttgatactcagatcaaga
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| CDS seq | atggggagggggaagattgtgatccgccggatcgacaactcgacgagccggcaggtgacgttctcgaagcggaggaacgggatcttcaagaaggccaaggagctggccatcctctgcgacgccgaggtcggcctcatgatcttctccagcaccggccgcctctacgagtactccagcaccagcatgaagtcagttatagatcggtatggcaagtccaaggatgagcagcaagccgtcgcaaatcccaactcggagcttaagttttggcaaagggaggcagcaagcttgagacaacaactgcacaacttgcaagaaaatcatcggcagttgatgggtgaagatctatctgggctgaatgttaaggaattgcaatctctagagaatcagctggaaataagtctacgtagtgtccgtacaaagaaggaccacgtcttgattgatgaaattcatgaactgaatcggaagggaagtctagttcaccaagaaaacatggaattatacaagaagatcagtttaattcgtcaagaaaatgctgagttatataagaagatctacgagactgaaggaccaagtgaagtcaatcgggattcaccaactccttacaactttgcagtaattgaaaaaacaaatgttcctgtgcaacttggactcagcacactaccacaacatagtgacgccgaacaatcagctgctcctaagctagggttacagttgaatccatga
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| Protein seq | MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTSMKSVIDRYGKSKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKISLIRQENAELYKKIYETEGPSEVNRDSPTPYNFAVIEKTNVPVQLGLSTLPQHSDAEQSAAPKLGLQLNP |
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| Function | MADS-box transcription factor 27 [UniProtKB/Swiss-Prot:Q6EP49] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0022310 | OsNaBo_02g0022310.01 | Chr02 | 23947687 | 23954857 | + | NAM | ||
| CDS seq | atggggagggggaagattgtgatccgccggatcgacaactcgacgagccggcaggtgacgttctcgaagcggaggaacgggatcttcaagaaggccaaggagctggccatcctctgcgacgccgaggtcggcctcatgatcttctccagcaccggccgcctctacgagtactccagcaccagcatgaagtcagttatagatcggtatggcaagtccaaggatgagcagcaagccgtcgcaaatcccaactcggagcttaagatcatcctgaaagcaaatgccacagtggagtttagaattttggcaaagggaggcagcaagcttgagacaacaactgcacaacttgcaagaaaatcatcggaccacgtcttgattgatgaaattcatgaactgaatcggaagggaagtctagttcaccaagaaaacatggaattatacaagaagatcagtttaattcgtcaagaaaatgctgagttatataagaagatctacgagactgaaggaccaagtgaagtcaatcgggattcaccaactccttacaactttgcagtaattgaaaaaacaaatgttcctgtgcaacttggactcagcacactaccacaacatagtgacgccgaacaatcagctgctcctaagctagggttacagttgaatccatga
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| Protein seq | MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTSMKSVIDRYGKSKDEQQAVANPNSELKIILKANATVEFRILAKGGSKLETTTAQLARKSSDHVLIDEIHELNRKGSLVHQENMELYKKISLIRQENAELYKKIYETEGPSEVNRDSPTPYNFAVIEKTNVPVQLGLSTLPQHSDAEQSAAPKLGLQLNP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0022310 | OsNaBo_02g0022310.02 | Chr02 | 23947687 | 23954857 | + | NAM | ||
| CDS seq | atggggagggggaagattgtgatccgccggatcgacaactcgacgagccggcaggtgacgttctcgaagcggaggaacgggatcttcaagaaggccaaggagctggccatcctctgcgacgccgaggtcggcctcatgatcttctccagcaccggccgcctctacgagtactccagcaccagcatgaagtcagttatagatcggtatggcaagtccaaggatgagcagcaagccgtcgcaaatcccaactcggagcttaagttttggcaaagggaggcagcaagcttgagacaacaactgcacaacttgcaagaaaatcatcggcagttgatgggtgaagatctatctgggctgaatgttaaggaattgcaatctctagagaatcagctggaaataagtctacgtagtgtccgtacaaagaaggaccacgtcttgattgatgaaattcatgaactgaatcggaagggaagtctagttcaccaagaaaacatggaattatacaagaagatcagtttaattcgtcaagaaaatgctgagttatataagaagatctacgagactgaaggaccaagtgaagtcaatcgggattcaccaactccttacaactttgcagtaattgaaaaaacaaatgttcctgtgcaacttggactcagcacactaccacaacatagtgacgccgaacaatcagctgctcctaagctagggttacagttgaatccatga
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| Protein seq | MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTSMKSVIDRYGKSKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKISLIRQENAELYKKIYETEGPSEVNRDSPTPYNFAVIEKTNVPVQLGLSTLPQHSDAEQSAAPKLGLQLNP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr02 | 23949105 | 23953465 | + | OsNaBo_02g0022310.01 | OsNaBo_02g0022310.01,OsNaBo_02g0022310.02 | All |
| SE | Chr02 | 23953526 | 23954220 | + | OsNaBo_02g0022310.02 | OsNaBo_02g0022310.01,OsNaBo_02g0022310.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 35.664505 | 3.019879 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0579600 | RBH | 0.697511 | 1.211449 | 1.940766 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g36924 | RBH | 0.471258 | 0.815944 | 0.501249 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0579600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0022420 | RBH | 0.364625 | 21.173834 | 2.484947 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0022520 | RBH | 0.236425 | 9.339393 | 2.456095 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0022510 | RBH | 1.309753 | 27.894382 | 2.893571 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0022210 | RBH | 0.076741 | 0.670462 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0022150 | RBH | 2.949754 | 15.194388 | 4.016745 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0365100 | RBH | 4.8308435 | 38.241026 | 5.4547375 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0021900 | RBH | 0.431415 | 2.364930 | 0.486628 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0393300 | RBH | 3.2782135 | 35.6549645 | 4.1039535 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0022350 | RBH | 0.103851 | 0.621016 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0022080 | RBH | 0.923678 | 38.203548 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0022550 | RBH | 0.000000 | 26.627596 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0022220 | RBH | 0.111299 | 11.868999 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0022040 | RBH | 0.259367 | 16.407238 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G022490 | RBH | 0.500310 | 6.429537 | 1.229796 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0015510 | RBH | 0.495109 | 46.568035 | 0.369287 |
