Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0021170 | OGI:02060820 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:22864541-22867814 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggctagtgctacttttggtgcaatggactctgtcctcagcaagctcaccgacttgctgaccttcgaatacaagttgcttgaggaagtgaaacgagacattgttttcgtgaaatctgagctagagagcatgcatgctttcctaaagaagatgtctgaagttgaggatgagcttgatgagcaggtgaagtgctggaggaaggaggttcgggaactgtcctatgatatagaagaccacatcgacgagtttgcggtccacctcaaagatgagcccggatgtgagctgcatggcatcccaagtttcataagtcaaattgtcaaatcgatcgcgtcaatcaggaatcactaccaaattgccaaggagatgcgaggcataagagcctttgttggggaggctagcaggaggcataagagatacaaggttgatgatactatctccaaacctagcaaggtgactgttgaccctcgcttgcctgctctgtataaagatgcatctgatcttgtaggcattgatgggccaaaaattgagctcatcaggtggctaacagagggcgtgagtggccctgaacagcaactgaaggtggttcccattgttggatctggaggattgggcaagacaactcttgctaaccaggtgtaccacaatcttgaggggatatttgagagccgagcttttgtcactgtttctcaaaagcctgacatgatgaagattttaagagagatactttctggaattgggtacaatggtctcgaagctgcatgggatgagggtaaactcattcatgaagtcagaaaataccttaggtttgtcaggtatgtatatccattctagttgtattcaaaagtcaaaactcaagttaacacattagtttaaagcactcacaatgaagttagcttgcaacatatggttgaagagataatatccgccAaaaaaaggttcattgcatcatacgccttgacgtagggagactagtctgttcctttgtataataattcatctttcgctttggaggtttgaaatcttgataataacttcaaaaatgactagcttttcattatttcatccagatatcttatttggattgaataaaatttagtgtgatctttcaactagtttggatgtgatgttcttggttgttactgtctaacacccttattggttatgtgccacttcaatatttttttttaatctttgttactctgttaccaattatttcacccttgacaatgttttgcttggcaggtattgtgttgttcttgatgatatatggagtatttctgtgtgggaaatattgaggtgtgctttacctgagaacaatcgtggtagtagaatagtagttaccacacgtattactgacatagctagagcatgttgtgcaccacgtcattgtgatatctatcatcttaaaccccttgataatacctcctctcgaaggttattttttaaaaggatatgtggttcagaggatagtttgccaagtcatgtaaagggggtagctgagaagattttgaaaaagtgtggcggtatgccattagctataatcagtatagcttctttgttggctactaaagcacagacaaaggaacagtgggagagtgtaaatatctctctggaatctggactagacaagcacattggttttgaaggaatgaactggatattatcactcagctacaaccatctcccgcaacacctaaaaacttgcatgctgtacttatgtttgtttccagaagactacattatttcaaaagatatactggtgcagcaatggatagctgaaggatttgtttttcctgaacatggacggaatttagaagaagcagggtattattactttaacgagctcatcaacagaagcatggcccagccagtagatattgagtacaatggtgaagcaatgtcttgtcgggtccatgacatgattcgtagtctcataatatcgaagtcaaatcaagaaaactttgttaccatattttccacatcagaggctgcatctgtcatgacaccagggaagattcgtcggttgtctgttcagtacatcgatgaagaatgtggcatggttccaatgctgccaactctatcacatgcccgctcatttagtatttttggacattgtaataaaatgccttctctcacagagttcaaagttttgcgagtgttggagatggacgattgctggaaactggagaaccatcatcttaagcatattgggaggctatctcagttgaaatacttgggacttagaagaactcctatcagtgagctccctgaacagattggagaacttaaatatttggagacattagacttaaggttaagccatttaacagaattaccagcagctgttgttcgacttcgacggttggtacacctgtttttcgattctaacatcaaattgccagatggaattggagagatgcaatctttgcaacaactgtcatcttttgatgtttgtcggagttcaattacctcgctacaagagctcagtagactatccaatctaagggtactagtgatgtcttggagatcctttggtatgattggtgatgtcagaagctacaacaacaatctggtctcatctcttggtaggttgggaacatgtagtctccggtccatatacattcaaggttacaacagttctctgcaagatttctcactggatttatggtgtcctcctccatctctcctgcaaaaatttgttgccaacaagtgtctcagtgtgattccaaactggttgggctcacttatcaacctatcttacatcaacgtcgatgttcttcgagcggcacaaagagatctggatatccttggtgagctacctaaccttctctttctcaggctaggctcagaaacagctccacaagaaagactcatcatccgcgaccagtgtttcgaacacttaaaggaattcaaatttatttgtttgctcacagagggactggaatttcaagtgggcgctatgccaaggcttgaaagactttgctttcagtttgtagcattggaaatcatttatgcaactggtggttttgattttggtatccaacacctgttgtccctcaaggaagcttttgtcaagatagactgttttgctgcttgggctggagtaggaaatgctgctgaggcggcgatcagaaattcagcaagagcactaccaaacaatcccttgctgaacattgagagattcagtgccaatgatgatgacatggaggaagattttggttttgttgttcttgggcggcggatgcagcaaagaatgccccaaccagagacatga
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| CDS seq | atggctagtgctacttttggtgcaatggactctgtcctcagcaagctcaccgacttgctgaccttcgaatacaagttgcttgaggaagtgaaacgagacattgttttcgtgaaatctgagctagagagcatgcatgctttcctaaagaagatgtctgaagttgaggatgagcttgatgagcaggtgaagtgctggaggaaggaggttcgggaactgtcctatgatatagaagaccacatcgacgagtttgcggtccacctcaaagatgagcccggatgtgagctgcatggcatcccaagtttcataagtcaaattgtcaaatcgatcgcgtcaatcaggaatcactaccaaattgccaaggagatgcgaggcataagagcctttgttggggaggctagcaggaggcataagagatacaaggttgatgatactatctccaaacctagcaaggtgactgttgaccctcgcttgcctgctctgtataaagatgcatctgatcttgtaggcattgatgggccaaaaattgagctcatcaggtggctaacagagggcgtgagtggccctgaacagcaactgaaggtggttcccattgttggatctggaggattgggcaagacaactcttgctaaccaggtgtaccacaatcttgaggggatatttgagagccgagcttttgtcactgtttctcaaaagcctgacatgatgaagattttaagagagatactttctggaattgggtacaatggtctcgaagctgcatgggatgagggtaaactcattcatgaagtcagaaaataccttaggtttgtcaggtattgtgttgttcttgatgatatatggagtatttctgtgtgggaaatattgaggtgtgctttacctgagaacaatcgtggtagtagaatagtagttaccacacgtattactgacatagctagagcatgttgtgcaccacgtcattgtgatatctatcatcttaaaccccttgataatacctcctctcgaaggttattttttaaaaggatatgtggttcagaggatagtttgccaagtcatgtaaagggggtagctgagaagattttgaaaaagtgtggcggtatgccattagctataatcagtatagcttctttgttggctactaaagcacagacaaaggaacagtgggagagtgtaaatatctctctggaatctggactagacaagcacattggttttgaaggaatgaactggatattatcactcagctacaaccatctcccgcaacacctaaaaacttgcatgctgtacttatgtttgtttccagaagactacattatttcaaaagatatactggtgcagcaatggatagctgaaggatttgtttttcctgaacatggacggaatttagaagaagcagggtattattactttaacgagctcatcaacagaagcatggcccagccagtagatattgagtacaatggtgaagcaatgtcttgtcgggtccatgacatgattcgtagtctcataatatcgaagtcaaatcaagaaaactttgttaccatattttccacatcagaggctgcatctgtcatgacaccagggaagattcgtcggttgtctgttcagtacatcgatgaagaatgtggcatggttccaatgctgccaactctatcacatgcccgctcatttagtatttttggacattgtaataaaatgccttctctcacagagttcaaagttttgcgagtgttggagatggacgattgctggaaactggagaaccatcatcttaagcatattgggaggctatctcagttgaaatacttgggacttagaagaactcctatcagtgagctccctgaacagattggagaacttaaatatttggagacattagacttaaggttaagccatttaacagaattaccagcagctgttgttcgacttcgacggttggtacacctgtttttcgattctaacatcaaattgccagatggaattggagagatgcaatctttgcaacaactgtcatcttttgatgtttgtcggagttcaattacctcgctacaagagctcagtagactatccaatctaagggtactagtgatgtcttggagatcctttggtatgattggtgatgtcagaagctacaacaacaatctggtctcatctcttggtaggttgggaacatgtagtctccggtccatatacattcaaggttacaacagttctctgcaagatttctcactggatttatggtgtcctcctccatctctcctgcaaaaatttgttgccaacaagtgtctcagtgtgattccaaactggttgggctcacttatcaacctatcttacatcaacgtcgatgttcttcgagcggcacaaagagatctggatatccttggtgagctacctaaccttctctttctcaggctaggctcagaaacagctccacaagaaagactcatcatccgcgaccagtgtttcgaacacttaaaggaattcaaatttatttgtttgctcacagagggactggaatttcaagtgggcgctatgccaaggcttgaaagactttgctttcagtttgtagcattggaaatcatttatgcaactggtggttttgattttggtatccaacacctgttgtccctcaaggaagcttttgtcaagatagactgttttgctgcttgggctggagtaggaaatgctgctgaggcggcgatcagaaattcagcaagagcactaccaaacaatcccttgctgaacattgagagattcagtgccaatgatgatgacatggaggaagattttggttttgttgttcttgggcggcggatgcagcaaagaatgccccaaccagagacatga
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| Protein seq | MASATFGAMDSVLSKLTDLLTFEYKLLEEVKRDIVFVKSELESMHAFLKKMSEVEDELDEQVKCWRKEVRELSYDIEDHIDEFAVHLKDEPGCELHGIPSFISQIVKSIASIRNHYQIAKEMRGIRAFVGEASRRHKRYKVDDTISKPSKVTVDPRLPALYKDASDLVGIDGPKIELIRWLTEGVSGPEQQLKVVPIVGSGGLGKTTLANQVYHNLEGIFESRAFVTVSQKPDMMKILREILSGIGYNGLEAAWDEGKLIHEVRKYLRFVRYCVVLDDIWSISVWEILRCALPENNRGSRIVVTTRITDIARACCAPRHCDIYHLKPLDNTSSRRLFFKRICGSEDSLPSHVKGVAEKILKKCGGMPLAIISIASLLATKAQTKEQWESVNISLESGLDKHIGFEGMNWILSLSYNHLPQHLKTCMLYLCLFPEDYIISKDILVQQWIAEGFVFPEHGRNLEEAGYYYFNELINRSMAQPVDIEYNGEAMSCRVHDMIRSLIISKSNQENFVTIFSTSEAASVMTPGKIRRLSVQYIDEECGMVPMLPTLSHARSFSIFGHCNKMPSLTEFKVLRVLEMDDCWKLENHHLKHIGRLSQLKYLGLRRTPISELPEQIGELKYLETLDLRLSHLTELPAAVVRLRRLVHLFFDSNIKLPDGIGEMQSLQQLSSFDVCRSSITSLQELSRLSNLRVLVMSWRSFGMIGDVRSYNNNLVSSLGRLGTCSLRSIYIQGYNSSLQDFSLDLWCPPPSLLQKFVANKCLSVIPNWLGSLINLSYINVDVLRAAQRDLDILGELPNLLFLRLGSETAPQERLIIRDQCFEHLKEFKFICLLTEGLEFQVGAMPRLERLCFQFVALEIIYATGGFDFGIQHLLSLKEAFVKIDCFAAWAGVGNAAEAAIRNSARALPNNPLLNIERFSANDDDMEEDFGFVVLGRRMQQRMPQPET |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0021170 | OsNaBo_02g0021170.01 | Chr02 | 22864541 | 22867814 | + | NAM | ||
| CDS seq | atggctagtgctacttttggtgcaatggactctgtcctcagcaagctcaccgacttgctgaccttcgaatacaagttgcttgaggaagtgaaacgagacattgttttcgtgaaatctgagctagagagcatgcatgctttcctaaagaagatgtctgaagttgaggatgagcttgatgagcaggtgaagtgctggaggaaggaggttcgggaactgtcctatgatatagaagaccacatcgacgagtttgcggtccacctcaaagatgagcccggatgtgagctgcatggcatcccaagtttcataagtcaaattgtcaaatcgatcgcgtcaatcaggaatcactaccaaattgccaaggagatgcgaggcataagagcctttgttggggaggctagcaggaggcataagagatacaaggttgatgatactatctccaaacctagcaaggtgactgttgaccctcgcttgcctgctctgtataaagatgcatctgatcttgtaggcattgatgggccaaaaattgagctcatcaggtggctaacagagggcgtgagtggccctgaacagcaactgaaggtggttcccattgttggatctggaggattgggcaagacaactcttgctaaccaggtgtaccacaatcttgaggggatatttgagagccgagcttttgtcactgtttctcaaaagcctgacatgatgaagattttaagagagatactttctggaattgggtacaatggtctcgaagctgcatgggatgagggtaaactcattcatgaagtcagaaaataccttaggtttgtcaggtattgtgttgttcttgatgatatatggagtatttctgtgtgggaaatattgaggtgtgctttacctgagaacaatcgtggtagtagaatagtagttaccacacgtattactgacatagctagagcatgttgtgcaccacgtcattgtgatatctatcatcttaaaccccttgataatacctcctctcgaaggttattttttaaaaggatatgtggttcagaggatagtttgccaagtcatgtaaagggggtagctgagaagattttgaaaaagtgtggcggtatgccattagctataatcagtatagcttctttgttggctactaaagcacagacaaaggaacagtgggagagtgtaaatatctctctggaatctggactagacaagcacattggttttgaaggaatgaactggatattatcactcagctacaaccatctcccgcaacacctaaaaacttgcatgctgtacttatgtttgtttccagaagactacattatttcaaaagatatactggtgcagcaatggatagctgaaggatttgtttttcctgaacatggacggaatttagaagaagcagggtattattactttaacgagctcatcaacagaagcatggcccagccagtagatattgagtacaatggtgaagcaatgtcttgtcgggtccatgacatgattcgtagtctcataatatcgaagtcaaatcaagaaaactttgttaccatattttccacatcagaggctgcatctgtcatgacaccagggaagattcgtcggttgtctgttcagtacatcgatgaagaatgtggcatggttccaatgctgccaactctatcacatgcccgctcatttagtatttttggacattgtaataaaatgccttctctcacagagttcaaagttttgcgagtgttggagatggacgattgctggaaactggagaaccatcatcttaagcatattgggaggctatctcagttgaaatacttgggacttagaagaactcctatcagtgagctccctgaacagattggagaacttaaatatttggagacattagacttaaggttaagccatttaacagaattaccagcagctgttgttcgacttcgacggttggtacacctgtttttcgattctaacatcaaattgccagatggaattggagagatgcaatctttgcaacaactgtcatcttttgatgtttgtcggagttcaattacctcgctacaagagctcagtagactatccaatctaagggtactagtgatgtcttggagatcctttggtatgattggtgatgtcagaagctacaacaacaatctggtctcatctcttggtaggttgggaacatgtagtctccggtccatatacattcaaggttacaacagttctctgcaagatttctcactggatttatggtgtcctcctccatctctcctgcaaaaatttgttgccaacaagtgtctcagtgtgattccaaactggttgggctcacttatcaacctatcttacatcaacgtcgatgttcttcgagcggcacaaagagatctggatatccttggtgagctacctaaccttctctttctcaggctaggctcagaaacagctccacaagaaagactcatcatccgcgaccagtgtttcgaacacttaaaggaattcaaatttatttgtttgctcacagagggactggaatttcaagtgggcgctatgccaaggcttgaaagactttgctttcagtttgtagcattggaaatcatttatgcaactggtggttttgattttggtatccaacacctgttgtccctcaaggaagcttttgtcaagatagactgttttgctgcttgggctggagtaggaaatgctgctgaggcggcgatcagaaattcagcaagagcactaccaaacaatcccttgctgaacattgagagattcagtgccaatgatgatgacatggaggaagattttggttttgttgttcttgggcggcggatgcagcaaagaatgccccaaccagagacatga
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| Protein seq | MASATFGAMDSVLSKLTDLLTFEYKLLEEVKRDIVFVKSELESMHAFLKKMSEVEDELDEQVKCWRKEVRELSYDIEDHIDEFAVHLKDEPGCELHGIPSFISQIVKSIASIRNHYQIAKEMRGIRAFVGEASRRHKRYKVDDTISKPSKVTVDPRLPALYKDASDLVGIDGPKIELIRWLTEGVSGPEQQLKVVPIVGSGGLGKTTLANQVYHNLEGIFESRAFVTVSQKPDMMKILREILSGIGYNGLEAAWDEGKLIHEVRKYLRFVRYCVVLDDIWSISVWEILRCALPENNRGSRIVVTTRITDIARACCAPRHCDIYHLKPLDNTSSRRLFFKRICGSEDSLPSHVKGVAEKILKKCGGMPLAIISIASLLATKAQTKEQWESVNISLESGLDKHIGFEGMNWILSLSYNHLPQHLKTCMLYLCLFPEDYIISKDILVQQWIAEGFVFPEHGRNLEEAGYYYFNELINRSMAQPVDIEYNGEAMSCRVHDMIRSLIISKSNQENFVTIFSTSEAASVMTPGKIRRLSVQYIDEECGMVPMLPTLSHARSFSIFGHCNKMPSLTEFKVLRVLEMDDCWKLENHHLKHIGRLSQLKYLGLRRTPISELPEQIGELKYLETLDLRLSHLTELPAAVVRLRRLVHLFFDSNIKLPDGIGEMQSLQQLSSFDVCRSSITSLQELSRLSNLRVLVMSWRSFGMIGDVRSYNNNLVSSLGRLGTCSLRSIYIQGYNSSLQDFSLDLWCPPPSLLQKFVANKCLSVIPNWLGSLINLSYINVDVLRAAQRDLDILGELPNLLFLRLGSETAPQERLIIRDQCFEHLKEFKFICLLTEGLEFQVGAMPRLERLCFQFVALEIIYATGGFDFGIQHLLSLKEAFVKIDCFAAWAGVGNAAEAAIRNSARALPNNPLLNIERFSANDDDMEEDFGFVVLGRRMQQRMPQPET
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 4.169880 | 1.185294 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0286850 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g35210 | RBH | 0.227498 | 0.177635 | 0.108021 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0286850 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0021310 | RBH | 0.066798 | 1.646792 | 0.222997 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0021390 | RBH | 0.045170 | 0.378130 | 0.222132 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0021390 | RBH | 0.0 | 0.0 | 1.745268 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0021120 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0021040 | RBH | 1.104256 | 3.261026 | 1.772481 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0348200 | RBH | 1.4488065 | 3.7804115 | 3.0433605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0020780 | RBH | 0.000000 | 0.140585 | 0.331308 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0408600 | SBH | 4.4523945 | 45.5463845 | 5.2119105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0021250 | RBH | 0.165963 | 0.064087 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0020990 | RBH | 0.367873 | 2.115177 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0021440 | RBH | 0.000000 | 4.440400 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0021140 | RBH | 0.259248 | 0.083940 | 0.076404 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0020970 | RBH | 0.057185 | 1.431827 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G021400 | RBH | 0.000000 | 0.469108 | 0.187154 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0017560 | SBH | 0.0 | 2.526719 | 0.250850 |
