Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0019570 | OGI:02056290 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:21025076-21027439 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaacaaccatccggagtaagttttgatagcctgtctgctgcaagcctcatggttttggcatttccattctgtttggcagcagaacagagtaaactccaggctgaagcaccagattctgaagggactacactatcaatgaaatgctctgcttccttgaacatgccagcacggcccaaaacctcaatcatgtgggagtaatgctcctctgaaggttgtattttgtaaacctcggtcatggatacaaagaactggaaagcttcatttacaaggccgatttccgcacaggccttcagcaccgataagaatgctagggaatttggtgatttctccttccttaacatctgcacaaacaggcgaatggctgtctctggacaaccattttctacactagccatgattattgaggtccaagaagaagaattcctgcctgaagtatttctgaaggcctcaaatgcatgtgtgaggctaccacaacctgaatacatgtcgataaggtaatcgcacatacagcctgtagaagaaagtccacgcttcataaggtaggcatgtgcttgcaacccttcaggaagatgtgctttctttccacaagaactcaagataagacatgcagttgggtagtcaagcaccccaccagaacgttggattacatgaaaaagattaagtattccaagatgatcaccaagttcagcaaactcttgaaacagcgtaccccaagaaatttcactatttgagagtgacaagcacaagcgaagggcctggttgaactgtccttctcttaagtaaaagctaatcaggcttctcagaacagaatcactggttccataaccatttctgatcgagttgctatggatttccattccacttacaacatccccaagagccatgcatgctgtaagtacagatgtgtatgtaaattcattaggttgtacatgctccaactgcattgtccgaaacaaatggatcgctctttcaaactgaccgttcaaacagctgcctgatattatagcggaccatgcaactgtgcaaggatccttagttctcgagaatagaatatgtgcttcctccaaagaaccgcatttagcatacatgtcaaccaatgaactgatcacaaaaggatccggattcacatcaaactttaatacgcaggcatgtagcatccgtcctgcagccaaatcaagatcagaagcacatgacttcaaactgctggccacaatgaactgatccagctttccctgtaccgataaatagtacttaagcattctcaaaggtaacatagaccggctcttgcgcagagtggcccaattgacatacatatccatgagagcactcatgacatacttatccgagtccaaaccagccctaatgaggtaaccatgaatttccctgccataatcaaaagcacatcttctagtaataacatgcaaaatactgcccagtgtatactcatcgcattctgcgcatttgtacatcagatcccggaaatgaaccaaagcctcctcatcacacaggttgtccgcatagcattggatgacaatattccaagaaaccaagtccttcgcattcatctcatcaaacactttctgcatcagctgcaattccctgcacctaccatagaactcgatcaggcagttctccaagaattcactgggaacgaatcctgacttgatcatgtagcaatgcagctgatatcccaaacggacatggcccaagctggaagctgctcggagtgcaacagagagagtgtacgcatcacatgaaacgccaccatggatcatttccaggaacagcattagcgcctgagtgtcgcagccgttttcagtgtaggcgctgagcattgaagtccaagaaaccgaatccggcgcggcaataccactgaacaccttctcggcgcaacccaacgaccggcagctcgcgtacatcgtgacgaggccgttcgccacgaagaggtcggccccgacgtaccccatcttggctgcggcggcgtggacctgccttccgacgccgaggctcccggcggctgcgcaggcgcgcagcgcgacggagaagacgaacgcgtcgggcctcagcggccactccaccatgcggagcagcaggtccagcgcctcggaggccggcccgtgcgtggcataccctgacatgagcacggtccaggcgacgagcgacctgtcccgcggcagcattgcgtcgaacgcctgacgcgcgggctgcatgcggccggcgcgcgcgtgcgcgcgcatgagcaagagctgcggggcggcatctggtacagtttccgcggatctgtgggggacggcgtgtgccacgcctacgcagacgcgagaagagcgcgagagcgagaagggaggaggaggaggaagcgccat
More
|
||||||||||
| CDS seq | atggcgcttcctcctcctcctcccttctcgctctcgcgctcttctcgcgtctgcgtaggcgtggcacacgccgtcccccacagatccgcggaaactgtaccagatgccgccccgcagctcttgctcatgcgcgcgcacgcgcgcgccggccgcatgcagcccgcgcgtcaggcgttcgacgcaatgctgccgcgggacaggtcgctcgtcgcctggaccgtgctcatgtcagggtatgccacgcacgggccggcctccgaggcgctggacctgctgctccgcatggtggagtggccgctgaggcccgacgcgttcgtcttctccgtcgcgctgcgcgcctgcgcagccgccgggagcctcggcgtcggaaggcaggtccacgccgccgcagccaagatggggtacgtcggggccgacctcttcgtggcgaacggcctcgtcacgatgtacgcgagctgccggtcgttgggttgcgccgagaaggtgttcagtggtattgccgcgccggattcggtttcttggacttcaatgctcagcgcctacactgaaaacggctgcgacactcaggcgctaatgctgttcctggaaatgatccatggtggcgtttcatgtgatgcgtacactctctctgttgcactccgagcagcttccagcttgggccatgtccgtttgggatatcagctgcattgctacatgatcaagtcaggattcgttcccagtgaattcttggagaactgcctgatcgagttctatggtaggtgcagggaattgcagctgatgcagaaagtgtttgatgagatgaatgcgaaggacttggtttcttggaatattgtcatccaatgctatgcggacaacctgtgtgatgaggaggctttggttcatttccgggatctgatgtacaaatgcgcagaatgcgatgagtatacactgggcagtattttgcatgttattactagaagatgtgcttttgattatggcagggaaattcatggttacctcattagggctggtttggactcggataagtatgtcatgagtgctctcatggatatgtatgtcaattgggccactctgcgcaagagccggtctatgttacctttgagaatgcttaagtactatttatcggtacagggaaagctggatcagttcattgtggccagcagtttgaagtcatgtgcttctgatcttgatttggctgcaggacggatgctacatgcctgcgtattaaagtttgatgtgaatccggatccttttgtgatcagttcattggttgacatgtatgctaaatgcggttctttggaggaagcacatattctattctcgagaactaaggatccttgcacagttgcatggtccgctataatatcaggcagctgtttgaacggtcagtttgaaagagcgatccatttgtttcggacaatgcagttggagcatgtacaacctaatgaatttacatacacatctgtacttacagcatgcatggctcttggggatgttgtaagtggaatggaaatccatagcaactcgatcagaaatggttatggaaccagtgattctgttctgagaagcctgattagcttttacttaagagaaggacagttcaaccaggcccttcgcttgtgcttgtcactctcaaatagtgaaatttcttggggtacgctgtttcaagagtttgctgaacttggtgatcatcttggaatacttaatctttttcatgtaatccaacgttctggtggggtgcttgactacccaactgcatgtcttatcttgagttcttgtggaaagaaagcacatcttcctgaagggttgcaagcacatgcctaccttatgaagcgtggactttcttctacaggctgtatgtgcgattaccttatcgacatgtattcaggttgtggtagcctcacacatgcatttgaggccttcagaaatacttcaggcaggaattcttcttcttggacctcaataatcatggctagtgtagaaaatggttgtccagagacagccattcgcctgtttgtgcagatgttaaggaaggagaaatcaccaaattccctagcattcttatcggtgctgaaggcctgtgcggaaatcggccttgtaaatgaagctttccagttctttgtatccatgaccgaggtttacaaaatacaaccttcagaggagcattactcccacatgattgaggttttgggccgtgctggcatgttcaaggaagcagagcatttcattgatagtgtagtcccttcagaatctggtgcttcagcctggagtttactctgttctgctgccaaacagaatggaaatgccaaaaccatgaggcttgcagcagacaggctatcaaaacttactccggatggttgttga
More
|
||||||||||
| Protein seq | MALPPPPPFSLSRSSRVCVGVAHAVPHRSAETVPDAAPQLLLMRAHARAGRMQPARQAFDAMLPRDRSLVAWTVLMSGYATHGPASEALDLLLRMVEWPLRPDAFVFSVALRACAAAGSLGVGRQVHAAAAKMGYVGADLFVANGLVTMYASCRSLGCAEKVFSGIAAPDSVSWTSMLSAYTENGCDTQALMLFLEMIHGGVSCDAYTLSVALRAASSLGHVRLGYQLHCYMIKSGFVPSEFLENCLIEFYGRCRELQLMQKVFDEMNAKDLVSWNIVIQCYADNLCDEEALVHFRDLMYKCAECDEYTLGSILHVITRRCAFDYGREIHGYLIRAGLDSDKYVMSALMDMYVNWATLRKSRSMLPLRMLKYYLSVQGKLDQFIVASSLKSCASDLDLAAGRMLHACVLKFDVNPDPFVISSLVDMYAKCGSLEEAHILFSRTKDPCTVAWSAIISGSCLNGQFERAIHLFRTMQLEHVQPNEFTYTSVLTACMALGDVVSGMEIHSNSIRNGYGTSDSVLRSLISFYLREGQFNQALRLCLSLSNSEISWGTLFQEFAELGDHLGILNLFHVIQRSGGVLDYPTACLILSSCGKKAHLPEGLQAHAYLMKRGLSSTGCMCDYLIDMYSGCGSLTHAFEAFRNTSGRNSSSWTSIIMASVENGCPETAIRLFVQMLRKEKSPNSLAFLSVLKACAEIGLVNEAFQFFVSMTEVYKIQPSEEHYSHMIEVLGRAGMFKEAEHFIDSVVPSESGASAWSLLCSAAKQNGNAKTMRLAADRLSKLTPDGC |
||||||||||
| Function | Pentatricopeptide repeat-containing protein At4g13650 [UniProtKB/Swiss-Prot:Q9SVP7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0019570 | OsNaBo_02g0019570.01 | Chr02 | 21025076 | 21027439 | - | NAM | ||
| CDS seq | atggcgcttcctcctcctcctcccttctcgctctcgcgctcttctcgcgtctgcgtaggcgtggcacacgccgtcccccacagatccgcggaaactgtaccagatgccgccccgcagctcttgctcatgcgcgcgcacgcgcgcgccggccgcatgcagcccgcgcgtcaggcgttcgacgcaatgctgccgcgggacaggtcgctcgtcgcctggaccgtgctcatgtcagggtatgccacgcacgggccggcctccgaggcgctggacctgctgctccgcatggtggagtggccgctgaggcccgacgcgttcgtcttctccgtcgcgctgcgcgcctgcgcagccgccgggagcctcggcgtcggaaggcaggtccacgccgccgcagccaagatggggtacgtcggggccgacctcttcgtggcgaacggcctcgtcacgatgtacgcgagctgccggtcgttgggttgcgccgagaaggtgttcagtggtattgccgcgccggattcggtttcttggacttcaatgctcagcgcctacactgaaaacggctgcgacactcaggcgctaatgctgttcctggaaatgatccatggtggcgtttcatgtgatgcgtacactctctctgttgcactccgagcagcttccagcttgggccatgtccgtttgggatatcagctgcattgctacatgatcaagtcaggattcgttcccagtgaattcttggagaactgcctgatcgagttctatggtaggtgcagggaattgcagctgatgcagaaagtgtttgatgagatgaatgcgaaggacttggtttcttggaatattgtcatccaatgctatgcggacaacctgtgtgatgaggaggctttggttcatttccgggatctgatgtacaaatgcgcagaatgcgatgagtatacactgggcagtattttgcatgttattactagaagatgtgcttttgattatggcagggaaattcatggttacctcattagggctggtttggactcggataagtatgtcatgagtgctctcatggatatgtatgtcaattgggccactctgcgcaagagccggtctatgttacctttgagaatgcttaagtactatttatcggtacagggaaagctggatcagttcattgtggccagcagtttgaagtcatgtgcttctgatcttgatttggctgcaggacggatgctacatgcctgcgtattaaagtttgatgtgaatccggatccttttgtgatcagttcattggttgacatgtatgctaaatgcggttctttggaggaagcacatattctattctcgagaactaaggatccttgcacagttgcatggtccgctataatatcaggcagctgtttgaacggtcagtttgaaagagcgatccatttgtttcggacaatgcagttggagcatgtacaacctaatgaatttacatacacatctgtacttacagcatgcatggctcttggggatgttgtaagtggaatggaaatccatagcaactcgatcagaaatggttatggaaccagtgattctgttctgagaagcctgattagcttttacttaagagaaggacagttcaaccaggcccttcgcttgtgcttgtcactctcaaatagtgaaatttcttggggtacgctgtttcaagagtttgctgaacttggtgatcatcttggaatacttaatctttttcatgtaatccaacgttctggtggggtgcttgactacccaactgcatgtcttatcttgagttcttgtggaaagaaagcacatcttcctgaagggttgcaagcacatgcctaccttatgaagcgtggactttcttctacaggctgtatgtgcgattaccttatcgacatgtattcaggttgtggtagcctcacacatgcatttgaggccttcagaaatacttcaggcaggaattcttcttcttggacctcaataatcatggctagtgtagaaaatggttgtccagagacagccattcgcctgtttgtgcagatgttaaggaaggagaaatcaccaaattccctagcattcttatcggtgctgaaggcctgtgcggaaatcggccttgtaaatgaagctttccagttctttgtatccatgaccgaggtttacaaaatacaaccttcagaggagcattactcccacatgattgaggttttgggccgtgctggcatgttcaaggaagcagagcatttcattgatagtgtagtcccttcagaatctggtgcttcagcctggagtttactctgttctgctgccaaacagaatggaaatgccaaaaccatgaggcttgcagcagacaggctatcaaaacttactccggatggttgttga
More
|
|||||||
| Protein seq | MALPPPPPFSLSRSSRVCVGVAHAVPHRSAETVPDAAPQLLLMRAHARAGRMQPARQAFDAMLPRDRSLVAWTVLMSGYATHGPASEALDLLLRMVEWPLRPDAFVFSVALRACAAAGSLGVGRQVHAAAAKMGYVGADLFVANGLVTMYASCRSLGCAEKVFSGIAAPDSVSWTSMLSAYTENGCDTQALMLFLEMIHGGVSCDAYTLSVALRAASSLGHVRLGYQLHCYMIKSGFVPSEFLENCLIEFYGRCRELQLMQKVFDEMNAKDLVSWNIVIQCYADNLCDEEALVHFRDLMYKCAECDEYTLGSILHVITRRCAFDYGREIHGYLIRAGLDSDKYVMSALMDMYVNWATLRKSRSMLPLRMLKYYLSVQGKLDQFIVASSLKSCASDLDLAAGRMLHACVLKFDVNPDPFVISSLVDMYAKCGSLEEAHILFSRTKDPCTVAWSAIISGSCLNGQFERAIHLFRTMQLEHVQPNEFTYTSVLTACMALGDVVSGMEIHSNSIRNGYGTSDSVLRSLISFYLREGQFNQALRLCLSLSNSEISWGTLFQEFAELGDHLGILNLFHVIQRSGGVLDYPTACLILSSCGKKAHLPEGLQAHAYLMKRGLSSTGCMCDYLIDMYSGCGSLTHAFEAFRNTSGRNSSSWTSIIMASVENGCPETAIRLFVQMLRKEKSPNSLAFLSVLKACAEIGLVNEAFQFFVSMTEVYKIQPSEEHYSHMIEVLGRAGMFKEAEHFIDSVVPSESGASAWSLLCSAAKQNGNAKTMRLAADRLSKLTPDGC
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.493935 | 3.333299 | 0.996085 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0529900 | RBH | 1.463038 | 1.688680 | 0.974934 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g32780 | RBH | 0.986137 | 1.132052 | 0.250144 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0529900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0019730 | RBH | 0.400221 | 0.0 | 0.447570 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0019840 | RBH | 0.316422 | 0.0 | 0.681579 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0019780 | RBH | 1.024756 | 0.0 | 0.230695 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0019570 | RBH | 0.331876 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0019510 | RBH | 3.169968 | 1.230171 | 2.382326 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0322200 | RBH | 6.668984 | 0.6145995 | 0.0403335 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0019220 | RBH | 0.344694 | 0.0 | 0.086504 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0342100 | RBH | 5.1817175 | 0.134487 | 1.82252 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0019750 | RBH | 0.265523 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0019490 | RBH | 0.259062 | 1.072689 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0019900 | RBH | 4.196173 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0019630 | RBH | 1.017828 | 0.0 | 0.327779 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0019410 | RBH | 0.384820 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G019850 | RBH | 0.193445 | 0.0 | 0.375627 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0011480 | RBH | 0.0 | 0.0 | 0.0 |
