Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0018300 | OGI:02053010 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:19617127-19620426 | ||||||||
| Gene Symbol | HIPP33, OsHMP13, HMP13, OsHIPP33, OsaHIP33, HIP33 | ||||||||||
| DNA seq | ccagtgtttttacctccacagcttcaacttcaaagggcgcaaagaacccaacaaggaccagagccagagtgagccaccaccagaggcgtgaccgaatcggctagcgagtgagagaggaggagcagttcacaggtgcagttccacgctcacagcagtgtccagagcagagcgcgaagggaagagggcgcagagaggaggaggagaggcagccatgggcgaggtatggtctctctttccgttcttggtaatgtgcgggggtgcgtgcgcgcggctccctgtggccgaggaaggcggtgccacgcctacctttgatgcgctttccgtttcttgcgtgcaggaggagaaggtgaaggaggaggcggcggcggagaaggggaaggaggcggcggtagcggaggaggaggaggcggcggcggcaggggaggagaagaaggaggacgcgccgccgccgccgccaccgccggaggaggtggtgatgcgggtcttcatgcactgcgaagggtgcgctcgcaaggtcaagaagatactcaggggatttgatggtaatggagaaagcctcttctcttcttctttttctgtttatctctagctttcttcttgttttctggccttgttcttcacttcttatgctactgtaatgtttttccctgtgcttcagagttcagactttacagagtttgcacttaacttgataataaaatgtggtactattagtttttatacttcagataactatttttttagcatattatattggcatgttaagtgtggtctcctagtttatcagtttggtgccagttttggtctttggacttctgcttcccattttgtttgtattttgttgaggaagagtacttcattgcttcgttctcgacatgttcttttacctcgttaaacttttgggttaagtgatgtcttatggtttttctttaacggcaaacaatttattcatttgaagtattcgactaagtatttgttaagtactacgttttgtttgattctttgtagcgtaagtttagtgcctccttcagaaacttttttgagttcgaattgacaagttttgttttgaggtctgctatttttctttgaaggattattcaaaactgttattgcaacatccggcaccatttgaagaggtttgaaatcattcagattcgcttaattaaacctttctttcaagatttcccacgtgcattttctgttaatgatggggaaaacaactcctgatgcagataactttttactcagaagagaataggatatgttagctctagtgccgtaaagatgaatcgcaactgctatatgttgatgctcttcaaaaaagtttagattatctttgaatgttgaatgaaaagacatacataacacatttaaaacttccaagttctgtactagcactcagtgactcagatcacaaggcacacacttattttgcagagatcaaaattgttctgattcttggtattttggttcagttgttgtagttaggcatgagccaacgaaaactAaaaaaaaatgggatgcaggagtggaagatgttgtcgcggactcgaaagctcacaaggtgatcgtgaagggaaagaaggctgctgctgacccaatgaaggtggtgcaccgtgtgcagaagaagacaggccgcaaggttgagcttctatcaccgatgccacctctggtggaggagaagaaggaagaggagaaaaaggaagagcccgagccaccaaaacctgaagagaagaaggaggtgaattattcttccgaaaagttcatctagtcactcatccatactgacatcaacatatcacctacttgggctagcttccatcatttcgcttgcgttgtgtacaatgttgttgtttgtgcgattttgacactcagatcttgatgtcttgttttgttcattagccaacggtgatagcggtggtcctgaaggtgcatatgcattgtgatgcctgtgcgcaagttatcaggaagaaaatcctcaagatgaaaggtacatgatttgttgctatctcccttctgttttattgcaaatacatatgttctgttggtacactgaatctgttttttttttctgtgtatgaagtttgtatttctgcacagtgaatacatattcgtgggttgctttgatcaaagagaatagctatcttttaaatttaatattcttattcacagatgagattgaaattttttgcctgatactagacctgcccatttcccctgtcttgggtgtttcagtttgcctgaccataatggtgagaattggccaattgggagtggacaattattatgaattgttactctaggcatactactttaactaaccttatttagtttaagaacataaactttcaaagaacaatatactactttcctagtaaaacaacacagttgtatttcataagttatttgatagttcttttatatcgaaggatccatttagtcatttacgacttcaggacccactgagtaatctctctctctctttttgtaggagtgcaatcagcagagccagacatgaaggcatcacaagtgacggtgaagggtgtgtttgaggagtcaaagctcaccgattacgtgcataaacgcattggtaagaatgccgccgtcgtaaaatctgaaccagcccctccccctgagaatgctggcgatgcaaatgcaaaggatgacaagaaggcggccgaaggtggcgaggagaaggacgagagcaaggaggaaaagaaggaaggtgatgatgctgggggtgatgagaaagaaaaggagaaagagaaggatgatagcaatgctgccgaggttgaagaggacaaagagaaagatccttcagccttggctgctgctaatctgtatatgcattaccaaagattcagcaaccctggtggatatggtgttcctggctacgcatacccgtatgcgccacagctcttcagcgacgagaatccgaacgcctgtgttgtgatgtgagaaggtgagaacaatgagatccaaattggggaaaataagagtgagactacgcatcccctaacttctGgggggGTGAAATCGGCTGTTCGAATATAGGATCAAGCAAGCCATTTTGGTTTCTAACTGTTCTCATGTAATTAAAATGTGAACTGTTGGCCTCGTCTCTATTGTTGGCCTTCATGGACATTATTTTATGTAAGCTAAAAATGTAGGATTTTGCTTTGTACTTTCTCTCTATTGGCTTTCCTTTTGTAAAAATTGTATAATATATATTGTTAGTGTTGAAATAGCTTGTGTATCCTTGTTATTGTCTCAGGAGGAGCACCCTCTAGTCATTATTGC
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| CDS seq | atgggcgaggaggagaaggtgaaggaggaggcggcggcggagaaggggaaggaggcggcggtagcggaggaggaggaggcggcggcggcaggggaggagaagaaggaggacgcgccgccgccgccgccaccgccggaggaggtggtgatgcgggtcttcatgcactgcgaagggtgcgctcgcaaggtcaagaagatactcaggggatttgatggagtggaagatgttgtcgcggactcgaaagctcacaaggtgatcgtgaagggaaagaaggctgctgctgacccaatgaaggtggtgcaccgtgtgcagaagaagacaggccgcaaggttgagcttctatcaccgatgccacctctggtggaggagaagaaggaagaggagaaaaaggaagagcccgagccaccaaaacctgaagagaagaaggagccaacggtgatagcggtggtcctgaaggtgcatatgcattgtgatgcctgtgcgcaagttatcaggaagaaaatcctcaagatgaaaggagtgcaatcagcagagccagacatgaaggcatcacaagtgacggtgaagggtgtgtttgaggagtcaaagctcaccgattacgtgcataaacgcattggtaagaatgccgccgtcgtaaaatctgaaccagcccctccccctgagaatgctggcgatgcaaatgcaaaggatgacaagaaggcggccgaaggtggcgaggagaaggacgagagcaaggaggaaaagaaggaaggtgatgatgctgggggtgatgagaaagaaaaggagaaagagaaggatgatagcaatgctgccgaggttgaagaggacaaagagaaagatccttcagccttggctgctgctaatctgtatatgcattaccaaagattcagcaaccctggtggatatggtgttcctggctacgcatacccgtatgcgccacagctcttcagcgacgagaatccgaacgcctgtgttgtgatgtga
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| Protein seq | MGEEEKVKEEAAAEKGKEAAVAEEEEAAAAGEEKKEDAPPPPPPPEEVVMRVFMHCEGCARKVKKILRGFDGVEDVVADSKAHKVIVKGKKAAADPMKVVHRVQKKTGRKVELLSPMPPLVEEKKEEEKKEEPEPPKPEEKKEPTVIAVVLKVHMHCDACAQVIRKKILKMKGVQSAEPDMKASQVTVKGVFEESKLTDYVHKRIGKNAAVVKSEPAPPPENAGDANAKDDKKAAEGGEEKDESKEEKKEGDDAGGDEKEKEKEKDDSNAAEVEEDKEKDPSALAAANLYMHYQRFSNPGGYGVPGYAYPYAPQLFSDENPNACVVM |
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| Function | Heavy metal-associated isoprenylated plant protein 7 [UniProtKB/Swiss-Prot:Q9C5D3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0018300 | OsNaBo_02g0018300.02 | Chr02 | 19617127 | 19620426 | + | NAM | ||
| CDS seq | atgggcgaggaggagaaggtgaaggaggaggcggcggcggagaaggggaaggaggcggcggtagcggaggaggaggaggcggcggcggcaggggaggagaagaaggaggacgcgccgccgccgccgccaccgccggaggaggtggtgatgcgggtcttcatgcactgcgaagggtgcgctcgcaaggtcaagaagatactcaggggatttgatggagtggaagatgttgtcgcggactcgaaagctcacaaggtgatcgtgaagggaaagaaggctgctgctgacccaatgaaggtggtgcaccgtgtgcagaagaagacaggccgcaaggttgagcttctatcaccgatgccacctctggtggaggagaagaaggaagaggagaaaaaggaagagcccgagccaccaaaacctgaagagaagaaggagccaacggtgatagcggtggtcctgaaggtgcatatgcattgtgatgcctgtgcgcaagttatcaggaagaaaatcctcaagatgaaaggagtgcaatcagcagagccagacatgaaggcatcacaagtgacggtgaagggtgtgtttgaggagtcaaagctcaccgattacgtgcataaacgcattggtaagaatgccgccgtcgtaaaatctgaaccagcccctccccctgagaatgctggcgatgcaaatgcaaaggatgacaagaaggcggccgaaggtggcgaggagaaggacgagagcaaggaggaaaagaaggaaggtgatgatgctgggggtgatgagaaagaaaaggagaaagagaaggatgatagcaatgctgccgaggttgaagaggacaaagagaaagatccttcagccttggctgctgctaatctgtatatgcattaccaaagattcagcaaccctggtggatatggtgttcctggctacgcatacccgtatgcgccacagctcttcagcgacgagaatccgaacgcctgtgttgtgatgtga
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| Protein seq | MGEEEKVKEEAAAEKGKEAAVAEEEEAAAAGEEKKEDAPPPPPPPEEVVMRVFMHCEGCARKVKKILRGFDGVEDVVADSKAHKVIVKGKKAAADPMKVVHRVQKKTGRKVELLSPMPPLVEEKKEEEKKEEPEPPKPEEKKEPTVIAVVLKVHMHCDACAQVIRKKILKMKGVQSAEPDMKASQVTVKGVFEESKLTDYVHKRIGKNAAVVKSEPAPPPENAGDANAKDDKKAAEGGEEKDESKEEKKEGDDAGGDEKEKEKEKDDSNAAEVEEDKEKDPSALAAANLYMHYQRFSNPGGYGVPGYAYPYAPQLFSDENPNACVVM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0018300 | OsNaBo_02g0018300.01 | Chr02 | 19617127 | 19620426 | + | NAM | ||
| CDS seq | atgggcgaggaggagaaggctgctgctgacccaatgaaggtggtgcaccgtgtgcagaagaagacaggccgcaaggttgagcttctatcaccgatgccacctctggtggaggagaagaaggaagaggagaaaaaggaagagcccgagccaccaaaacctgaagagaagaaggagccaacggtgatagcggtggtcctgaaggtgcatatgcattgtgatgcctgtgcgcaagttatcaggaagaaaatcctcaagatgaaaggagtgcaatcagcagagccagacatgaaggcatcacaagtgacggtgaagggtgtgtttgaggagtcaaagctcaccgattacgtgcataaacgcattggtaagaatgccgccgtcgtaaaatctgaaccagcccctccccctgagaatgctggcgatgcaaatgcaaaggatgacaagaaggcggccgaaggtggcgaggagaaggacgagagcaaggaggaaaagaaggaaggtgatgatgctgggggtgatgagaaagaaaaggagaaagagaaggatgatagcaatgctgccgaggttgaagaggacaaagagaaagatccttcagccttggctgctgctaatctgtatatgcattaccaaagattcagcaaccctggtggatatggtgttcctggctacgcatacccgtatgcgccacagctcttcagcgacgagaatccgaacgcctgtgttgtgatgtga
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| Protein seq | MGEEEKAAADPMKVVHRVQKKTGRKVELLSPMPPLVEEKKEEEKKEEPEPPKPEEKKEPTVIAVVLKVHMHCDACAQVIRKKILKMKGVQSAEPDMKASQVTVKGVFEESKLTDYVHKRIGKNAAVVKSEPAPPPENAGDANAKDDKKAAEGGEEKDESKEEKKEGDDAGGDEKEKEKEKDDSNAAEVEEDKEKDPSALAAANLYMHYQRFSNPGGYGVPGYAYPYAPQLFSDENPNACVVM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.238558 | 0.0 | 13.706508 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0510600 | RBH | 0.747379 | 0.059583 | 5.324132 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g30650 | RBH | 0.505417 | 0.040074 | 1.370535 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0510600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0018540 | RBH | 0.383895 | 0.0 | 10.228050 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0018690 | RBH | 0.201041 | 0.0 | 2.577834 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0018640 | RBH | 0.283982 | 4.154793 | 12.279384 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0018400 | RBH | 0.373949 | 0.116295 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0018340 | RBH | 2.974078 | 4.622621 | 38.751770 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0303900 | RBH | 7.176988 | 2.3568295 | 40.0065345 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0018020 | RBH | 0.197610 | 0.104426 | 3.441480 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0321500 | RBH | 10.436401 | 2.7557895 | 24.5548535 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0018580 | RBH | 0.348987 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0018290 | RBH | 0.508945 | 2.000688 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0018680 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0018460 | RBH | 1.759774 | 0.415712 | 2.615447 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0018180 | RBH | 0.377720 | 0.928159 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G018600 | RBH | 0.386718 | 1.932429 | 4.559839 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0010880 | RBH | 0.0 | 12.766182 | 32.883396 |
