Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0012630 | OGI:02029680 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:10729483-10733882 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggcgaacacagatgtcaattaactatcagcttcccatactgccgcgaaccaagatgcatgtttagacaggagagctaatagatacaatgcatctttacacgtcttcctgctctcgaccaacactttcctaacagacaagtttaccacaactaacttcggctaaactaactatactaaccattctacttcctggacaaaatagtctcctccagaagaccagaacccgcacaaagagatcaattggctcactcccgtaatgctctactgacccactgcacattttggaccaagcatcactgtgccttacaagCcacctgtgagctgttgctcttgctctgcattgctactgctcccacgatgctcctgttgcaaggccccttgttcacgacatgggttatcattctgtgcattttctctgctctccgttatcaacttctcttgaatcttgtctagttcctgcatgaatatgctgcattttgcttcatcatggcaaattttccagcaaatttcagccgctttactcattagcattgcatatctcaatgtattttctgaatcctttataccatgcttgtcaaataatttttccttgttctgttttagctgctcctctctgaattttttagtccatctgggcattatgtactgctctggtatttcattgattccaaactgagtgaaaagtctgaatatgtggcagcaaggtattccatcccttgtaaattttgcacattggcacttgaatgcattgatgccaggttcagcaagcacttcaaaataatttctatcaaactctgggttctcatagttgaagaccttttcaagtctgtacactgtccctatttgtatctcctgcacgttgaatgcagtagaatgtagtagttctttctgtactttcagaaatatttcccttgtgtaaatatgtgctgcatgttgttctattggTtgcattgagatgtaTttaaggtcagctcctgactgaaatctatcttcttcatgaacttttgctatatTCtcttgtatctccttaaattgcccaatgaacttatctaTTgtgtcctttggaagcatattacctttaaataatgagtttattccctcgttggaaccaactgagtcaataaatgggtagagatcttctctaaaatagacaggtgcccaactttttcttgtttgccacatgagttgcaggtgttggttttcacttgcattgtatctctcaataagctcaacccatccttcttcaaattctgtttctaccagcgagttgcctactaagttatgtagatctgtatttatgttacctcttgctgtcatgaagtctccaagcttttcctgagctttgctcataacatgccgcttgcaaaacctaagccttacatgcggcatgagttctgcaaatgccttctccattgatgtgtcctggtttgttatgaccgctcttggcatttttcctcccatcacttgcaaaaatgtacgcaacatccattcaaaggtttctactttctcatcttttaacaaagcacatcctaacaggaagggtgtcgcatggctatttattccaataataggcacaaaaggcatgttatacatatcagtgctataggcagcatcaaacataatgagatctccgaaaatatcatactcgatcctcaatcttgcatcagtccagaagatgcttgtaactgtgttgtcctcatctttttgcattacgtacagaaattctgggttttgaatctgcaattctgtgaagtgcttcaatgcgctttcaacatctgagtttgcttttctatgttctgtctgtgctatgttgtgctcatcattattttcaaatggtatgtctccgaaacaaactcttagtttcctgaaaatcttcataattttcttaggaggtaccctaTtttgttgcagaactcttaaaaatgacttctctccagttgacatctgtttgtggtctactatgaatcttgcaagcaaagggcttgggcataacggatgattgtgctcatggcgaactgctgtgaactcccattctcccttatcgagtttcactatcacccttgccttgcattgtgtcttctctacaagattgcttctcctcttcttcattgggttttcagatgacttcgttaacttcattttgccactcttgttgcattctaagtgaaacttctttctcttgtagttggttcccctctttcctacaaaaccagtaaggagagcatgtgcataatagaatctttgtgcggcttgaagggatggaaatttcattccgggttctggtggtcttgaattcttcagttcgtcgaaactaggatagAagtacttcccaagctccttatccgactcatcacctgagctgctgtctgaattgctttcactgcttgtatcctcgcttggcgcttcactgctttccacattatcatgtgatctgttatgctcttcagtatgctgaagtgaatggtctatcgagcttgtttggtcccccaatttatctacaattggtcgttctgtatttttgtctatgccatttgaagattgctcctgcatgcaagagaataacttacgttaagctactatttaataccttattattggtactcttgttagatttcaccttttcatacctgataatcaccagctcgctgtagtttgtcaacaggttccttctctacagtagatatactaatctctgcatgtctaggcatccttttgttgtttacctgaggtacaaccaggataacagatcattaaaaaatcacttccatcacatgtatacaaaacAaaaatatctggggaaccttagttagcaagcttacttcatttgaatcagctgaaataagaggttgcgacaaccgttcctcaagattatctgcctgtgtcagttggtcactatttctcttaacatccagctgtttctggcttggaggatttcgcctgcgtttgcgctttgagaatctaagcgaatagctaggacacaatggatggttgtgttcattccggactgctgcatactcccattgtcccttattgagcttcactaccacctttgcctggcattgagtccTctctataatatttttcttcctcttcctctgtgggttcggagttagctttgatgtgccagtcttgtggcactctatggtaaactttttTCtcctgtagttcgtcccccgctttgcaacaaagccagttttaagagcatgtgtctcatagaatctctgtgcatcttcaagtgttgcaaatttcattccaagttctggtggtcttgcattatccaattccattaaactaggactatagtgtgctccaagccctttatctgattcatttcctaggcttctgtcagaatcgccatcactgtttctatcatcgcttgacacttcattgctttccatattatcatgtgattggttttgtccatcagtatgctgcagtgattggtccattgagttggtttgtctccctaattgatccacATatagttgttctgcagttttgtctatgccatttgaagatagaagctgcacgcatgcaattgaatatttcttgttaaggtagctattcactgccatattcaaatgtccatattaatcctctccataagcattgtctggttttcatacctgatagccatcaccagcgatctgcagtcttccttctgttatcacttgcttctcaacaggtttctgcatttcgtttcgcagttaatgccaggcacaaagtgattctaaaaagtcaaagtgattctaaataccttgatcaactcgactggagttatcaccgtttgcccatcattgttactggcctgtaatacatgtatgtgagacaaagcaattagccaagtctttgttactacctatagctgcattttgccaaatttatgtatgtcattgtccgatggatgaacgcggtaggtaaacagataatgttcaagttaaaccttttcgccgcgcagctctggttggcaccaggcttgtacaggagaaatttcattccccagattgtttacacgagcaaaaacctggagaacagatctcttaaaaaggtcaatttcaccgaaagcacttaaccgattccaattctctgcaattctctgcaaaagatgcaatggcgagggtacatacattggctatatatatgtgatagcgatctcacctgttcggaatcaactggaaggatgtgcatcagcacgtcctccatgggaggagggccggcccgtgccagcagctcatcatctccaccatgaacaagtgcctgtttctggattggatttgggaggagacgaaatcaatcaaaaacccccctcacagcacagcatctactacctcgcacgggaagttgcggagaacagagtggaaatcgcgagttgcgcgcgtcttcgaccgtacctcatacat
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| CDS seq | atgtatgaggtacggtcgaagacgcgcgcaactcgcgatttccactctgttctccgcaacttcccgtgcgagaaacaggcacttgttcatggtggagatgatgagctgctggcacgggccggccctcctcccatggaggacgtgctgatgcacatccttccagttgattccgaacaggtttttgctcgtgtaaacaatctggggaatgaaatttctcctgtacaagcctggtgccaaccagagctgcgcggcgaaaaggccagtaacaatgatgggcaaacggtgataactccagtcgagttgatcaagaaacctgttgagaagcaagtgataacagaaggaagactgcagatcgctggtgatggctatcagcttctatcttcaaatggcatagacaaaactgcagaacaactatATgtggatcaattagggagacaaaccaactcaatggaccaatcactgcagcatactgatggacaaaaccaatcacatgataatatggaaagcaatgaagtgtcaagcgatgatagaaacagtgatggcgattctgacagaagcctaggaaatgaatcagataaagggcttggagcacactatagtcctagtttaatggaattggataatgcaagaccaccagaacttggaatgaaatttgcaacacttgaagatgcacagagattctatgagacacatgctcttaaaactggctttgttgcaaagcgggggacgaactacaggaGAaaaaagtttaccatagagtgccacaagactggcacatcaaagctaactccgaacccacagaggaagaggaagaaaaatattatagagAggactcaatgccaggcaaaggtggtagtgaagctcaataagggacaatgggagtatgcagcagtccggaatgaacacaaccatccattgtgtcctagctattcgcttagattctcaaagcgcaaacgcaggcgaaatcctccaagccagaaacagctggatgttaagagaaatagtgaccaactgacacaggcagataatcttgaggaacggttgtcgcaacctcttatttcagctgattcaaatgaagtaaacaacaaaaggatgcctagacatgcagagattagtatatctactgtagagaaggaacctgttgacaaactacagcgagctggtgattatcaggagcaatcttcaaatggcatagacaaaaatacagaacgaccaattgtagataaattgggggaccaaacaagctcgatagaccattcacttcagcatactgaagagcataacagatcacatgataatgtggaaagcagtgaagcgccaagcgaggatacaagcagtgaaagcaattcagacagcagctcaggtgatgagtcggataaggagcttgggaagtactTctatcctagtttcgacgaactgaagaattcaagaccaccagaacccggaatgaaatttccatcccttcaagccgcacaaagattctattatgcacatgctctccttactggttttgtaggaaagaggggaaccaactacaagagaaagaagtttcacttagaatgcaacaagagtggcaaaatgaagttaacgaagtcatctgaaaacccaatgaagaagaggagaagcaatcttgtagagaagacacaatgcaaggcaagggtgatagtgaaactcgataagggagaatgggagttcacagcagttcgccatgagcacaatcatccgttatgcccaagccctttgcttgcaagattcatagtagaccacaaacagatgtcaactggagagaagtcatttttaagagttctgcaacaaaAtaggagatacaatgcaagtgaaaaccaacacctgcaactcatgtggcaaacaagaaaaagttgggcacctgtctattttagagaagatctctacccatttattgactcagttggttccaacgagggaataaactcattatttaaaggtaatatgcttccaaaggacacAAtagataagttcattgggcaatttaaggagatacaagaGAatatagcaaaagttcatgaagaagatagatttcagtcaggagctgaccttaaAtacatctcaatgcaAccaatagaacaacatgcagcacatatttacacaagggaaatatttctgaaagtacagaaagaactactacattctactgcattcaacgtgcaggagatacaaatagggacagtgtacagacttgaaaaggtcttcaactatgagaacccagagtttgatagaaattattttgaagtgcttgctgaacctggcatcaatgcattcaagtgccaatgtgcaaaatttacaagggatggaataccttgctgccacatattcagacttttcactcagtttggaatcaatgaaataccagagcagtacataatgcccagatggactaaaaaattcagagaggagcagctaaaacagaacaaggaaaaattatttgacaagcatggtataaaggattcagaaaatacattgagatatgcaatgctaatgagtaaagcggctgaaatttgctggaaaatttgccatgatgaagcaaaatgcagcatattcatgcaggaactagacaagattcaagagaagttgataacggagagcagagaaaatgcacagaatgataacccatgtcgtgaacaaggggccttgcaacaggagcatcgtgggagcagtagcaatgcagagcaagagcaacagctcacaggtgGcttgtaa
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| Protein seq | MYEVRSKTRATRDFHSVLRNFPCEKQALVHGGDDELLARAGPPPMEDVLMHILPVDSEQVFARVNNLGNEISPVQAWCQPELRGEKASNNDGQTVITPVELIKKPVEKQVITEGRLQIAGDGYQLLSSNGIDKTAEQLYVDQLGRQTNSMDQSLQHTDGQNQSHDNMESNEVSSDDRNSDGDSDRSLGNESDKGLGAHYSPSLMELDNARPPELGMKFATLEDAQRFYETHALKTGFVAKRGTNYRRKKFTIECHKTGTSKLTPNPQRKRKKNIIERTQCQAKVVVKLNKGQWEYAAVRNEHNHPLCPSYSLRFSKRKRRRNPPSQKQLDVKRNSDQLTQADNLEERLSQPLISADSNEVNNKRMPRHAEISISTVEKEPVDKLQRAGDYQEQSSNGIDKNTERPIVDKLGDQTSSIDHSLQHTEEHNRSHDNVESSEAPSEDTSSESNSDSSSGDESDKELGKYFYPSFDELKNSRPPEPGMKFPSLQAAQRFYYAHALLTGFVGKRGTNYKRKKFHLECNKSGKMKLTKSSENPMKKRRSNLVEKTQCKARVIVKLDKGEWEFTAVRHEHNHPLCPSPLLARFIVDHKQMSTGEKSFLRVLQQNRRYNASENQHLQLMWQTRKSWAPVYFREDLYPFIDSVGSNEGINSLFKGNMLPKDTIDKFIGQFKEIQENIAKVHEEDRFQSGADLKYISMQPIEQHAAHIYTREIFLKVQKELLHSTAFNVQEIQIGTVYRLEKVFNYENPEFDRNYFEVLAEPGINAFKCQCAKFTRDGIPCCHIFRLFTQFGINEIPEQYIMPRWTKKFREEQLKQNKEKLFDKHGIKDSENTLRYAMLMSKAAEICWKICHDEAKCSIFMQELDKIQEKLITESRENAQNDNPCREQGALQQEHRGSSSNAEQEQQLTGGL |
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| Function | Protein FAR1-RELATED SEQUENCE 3 [UniProtKB/Swiss-Prot:Q9ZVC9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0012630 | OsNaBo_02g0012630.01 | Chr02 | 10729483 | 10733882 | - | NAM | ||
| CDS seq | atgtatgaggtacggtcgaagacgcgcgcaactcgcgatttccactctgttctccgcaacttcccgtgcgagaaacaggcacttgttcatggtggagatgatgagctgctggcacgggccggccctcctcccatggaggacgtgctgatgcacatccttccagttgattccgaacaggtttttgctcgtgtaaacaatctggggaatgaaatttctcctgtacaagcctggtgccaaccagagctgcgcggcgaaaaggccagtaacaatgatgggcaaacggtgataactccagtcgagttgatcaagaaacctgttgagaagcaagtgataacagaaggaagactgcagatcgctggtgatggctatcagcttctatcttcaaatggcatagacaaaactgcagaacaactatATgtggatcaattagggagacaaaccaactcaatggaccaatcactgcagcatactgatggacaaaaccaatcacatgataatatggaaagcaatgaagtgtcaagcgatgatagaaacagtgatggcgattctgacagaagcctaggaaatgaatcagataaagggcttggagcacactatagtcctagtttaatggaattggataatgcaagaccaccagaacttggaatgaaatttgcaacacttgaagatgcacagagattctatgagacacatgctcttaaaactggctttgttgcaaagcgggggacgaactacaggaGAaaaaagtttaccatagagtgccacaagactggcacatcaaagctaactccgaacccacagaggaagaggaagaaaaatattatagagAggactcaatgccaggcaaaggtggtagtgaagctcaataagggacaatgggagtatgcagcagtccggaatgaacacaaccatccattgtgtcctagctattcgcttagattctcaaagcgcaaacgcaggcgaaatcctccaagccagaaacagctggatgttaagagaaatagtgaccaactgacacaggcagataatcttgaggaacggttgtcgcaacctcttatttcagctgattcaaatgaagtaaacaacaaaaggatgcctagacatgcagagattagtatatctactgtagagaaggaacctgttgacaaactacagcgagctggtgattatcaggagcaatcttcaaatggcatagacaaaaatacagaacgaccaattgtagataaattgggggaccaaacaagctcgatagaccattcacttcagcatactgaagagcataacagatcacatgataatgtggaaagcagtgaagcgccaagcgaggatacaagcagtgaaagcaattcagacagcagctcaggtgatgagtcggataaggagcttgggaagtactTctatcctagtttcgacgaactgaagaattcaagaccaccagaacccggaatgaaatttccatcccttcaagccgcacaaagattctattatgcacatgctctccttactggttttgtaggaaagaggggaaccaactacaagagaaagaagtttcacttagaatgcaacaagagtggcaaaatgaagttaacgaagtcatctgaaaacccaatgaagaagaggagaagcaatcttgtagagaagacacaatgcaaggcaagggtgatagtgaaactcgataagggagaatgggagttcacagcagttcgccatgagcacaatcatccgttatgcccaagccctttgcttgcaagattcatagtagaccacaaacagatgtcaactggagagaagtcatttttaagagttctgcaacaaaAtaggagatacaatgcaagtgaaaaccaacacctgcaactcatgtggcaaacaagaaaaagttgggcacctgtctattttagagaagatctctacccatttattgactcagttggttccaacgagggaataaactcattatttaaaggtaatatgcttccaaaggacacAAtagataagttcattgggcaatttaaggagatacaagaGAatatagcaaaagttcatgaagaagatagatttcagtcaggagctgaccttaaAtacatctcaatgcaAccaatagaacaacatgcagcacatatttacacaagggaaatatttctgaaagtacagaaagaactactacattctactgcattcaacgtgcaggagatacaaatagggacagtgtacagacttgaaaaggtcttcaactatgagaacccagagtttgatagaaattattttgaagtgcttgctgaacctggcatcaatgcattcaagtgccaatgtgcaaaatttacaagggatggaataccttgctgccacatattcagacttttcactcagtttggaatcaatgaaataccagagcagtacataatgcccagatggactaaaaaattcagagaggagcagctaaaacagaacaaggaaaaattatttgacaagcatggtataaaggattcagaaaatacattgagatatgcaatgctaatgagtaaagcggctgaaatttgctggaaaatttgccatgatgaagcaaaatgcagcatattcatgcaggaactagacaagattcaagagaagttgataacggagagcagagaaaatgcacagaatgataacccatgtcgtgaacaaggggccttgcaacaggagcatcgtgggagcagtagcaatgcagagcaagagcaacagctcacaggtgGcttgtaa
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| Protein seq | MYEVRSKTRATRDFHSVLRNFPCEKQALVHGGDDELLARAGPPPMEDVLMHILPVDSEQVFARVNNLGNEISPVQAWCQPELRGEKASNNDGQTVITPVELIKKPVEKQVITEGRLQIAGDGYQLLSSNGIDKTAEQLYVDQLGRQTNSMDQSLQHTDGQNQSHDNMESNEVSSDDRNSDGDSDRSLGNESDKGLGAHYSPSLMELDNARPPELGMKFATLEDAQRFYETHALKTGFVAKRGTNYRRKKFTIECHKTGTSKLTPNPQRKRKKNIIERTQCQAKVVVKLNKGQWEYAAVRNEHNHPLCPSYSLRFSKRKRRRNPPSQKQLDVKRNSDQLTQADNLEERLSQPLISADSNEVNNKRMPRHAEISISTVEKEPVDKLQRAGDYQEQSSNGIDKNTERPIVDKLGDQTSSIDHSLQHTEEHNRSHDNVESSEAPSEDTSSESNSDSSSGDESDKELGKYFYPSFDELKNSRPPEPGMKFPSLQAAQRFYYAHALLTGFVGKRGTNYKRKKFHLECNKSGKMKLTKSSENPMKKRRSNLVEKTQCKARVIVKLDKGEWEFTAVRHEHNHPLCPSPLLARFIVDHKQMSTGEKSFLRVLQQNRRYNASENQHLQLMWQTRKSWAPVYFREDLYPFIDSVGSNEGINSLFKGNMLPKDTIDKFIGQFKEIQENIAKVHEEDRFQSGADLKYISMQPIEQHAAHIYTREIFLKVQKELLHSTAFNVQEIQIGTVYRLEKVFNYENPEFDRNYFEVLAEPGINAFKCQCAKFTRDGIPCCHIFRLFTQFGINEIPEQYIMPRWTKKFREEQLKQNKEKLFDKHGIKDSENTLRYAMLMSKAAEICWKICHDEAKCSIFMQELDKIQEKLITESRENAQNDNPCREQGALQQEHRGSSSNAEQEQQLTGGL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.369727 | 4.434485 | 6.849563 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0284500 | RBH | 1.183221 | 0.579924 | 2.876473 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g18370 | RBH | 0.732416 | 0.671754 | 0.713390 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0284500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0012530 | RBH | 0.493515 | 0.000000 | 4.647863 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0012710 | RBH | 0.291923 | 1.039042 | 1.338261 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0012550 | RBH | 0.529991 | 1.440129 | 5.804086 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0012380 | RBH | 0.150447 | 0.071156 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0012300 | RBH | 6.466052 | 5.628856 | 13.510058 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0165600 | RBH | 3.4632 | 8.240708 | 8.892901 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0012100 | RBH | 0.137485 | 0.000000 | 1.091263 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0178900 | RBH | 3.949604 | 7.9738265 | 15.869867 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0012660 | RBH | 0.080757 | 0.164579 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0012270 | RBH | 0.643143 | 7.531058 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0012700 | RBH | 5.431169 | 18.976488 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0012530 | RBH | 0.471559 | 0.165768 | 0.844283 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0012340 | RBH | 0.191583 | 3.987309 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G012690 | RBH | 0.195675 | 0.878012 | 2.571345 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
