Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0011540 | OGI:02027040 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:9503003-9506083 | ||||||||
| Gene Symbol | RITA1, OsbZIP20, bZIP20, RITA-1, RISBZ3 | ||||||||||
| DNA seq | aaaatcagagaaaagctctaacctccacaacatttatacttcgtagtttttcagtctcttaccaaatactgtgtactatatatagctagtcagttctattacaggacgacacttgacacgacacgaggactctgaaaaactcaagtccgttcacttgggacatcacatttttatacgtagctgagctgacaaagcagtaagaagtagttttcacttggacatggcgccattggagtggttgtcccagccccaggcgtcacccacctcgccaccgccgggcatctgcacctgctccggcggggacagcccggtgaaggggtcgtcgccggcgtagtccagcccggtgagcacgtcggggacgcggcacgccccctgccgggggttcagcgccggcgacagcccgcccaggtggccgaggccgcacgacagcgccccccgcgccaccatgtcctccgccatcttcacctgtacaaaactcggggacagcttcagagttcagaaacagccgaaatgcgtgatgccgatgcgatgatgatcaaataataatgcaatgcagtgtgcagagatgaaatgcatgatcaccttgacccggagggcctccacgtctgatttgaggattctgttgtccgtgaccgccgtcgtgaattgctgattggcatctgtcaactgcttgaaaagcgatgcgttttcgccccggagctggtcaacctgacgaacgagcacacgaattttgaaatctgaataaacccagagaccatcactcaaaattacagtaccaattggcacaatattttgttactcaatctgatatatggatggcgctgtttgaatttttaacattagcaaaggcgcaacgggtacaaatcaactcagtttacctgcgtctcgagatcagctaagtgagcttgctttctcttccttgatcgacgagcagactcccggttggaaaccatcctgtaatttgaagccagcaaccgtttcatgcaagttctttgtcaaatattccttctgaaaagtaatgtttacttctactactagcgaatacgcccataattttcatgccgtgacagacataatgcttgacataatcgctgatgttcttggtgtaccttctcattctcttaacgtccagtgggtttgtgctttgttcgcatggaccgccctctatatccaacagcgactcactgtcagaatctgaaccacttgtgcctcccagagtttggctctccttcatgttcagagtggtagctgacgtgggacttgctgctgctgatcacagaaaattgaacaaatagtgagcaagaacaattaaagaactgagcattgtttgtgcctcatcattaaatgcaattttgatgcagtaacagcacttgtactgtactactgtccatgcatgtccattgctgaaatctccatgtgttgaaaactccaggttgcatgtgttttttcagtgtgcagtacagtagcaaatcattacatacatggatgagtgactgtttttggtgtgcaaactgcagtcttattaactgatgaaaattgtggaagaggacgtgtgttaggccataccacagattgatgattgcgactcaattgtgtagactgcaggatgccgtgcgttgaggctctgggactggggccatatgtgattgggaatgaccccagtgatggtgctctgcttgaaagaaaaacagaagcataattaatcgagtaatcaatcatgcatatcaagaatcaagtacaatttaagataagcaaccaaagcttgtatgtatatgctgctacttataattagttgtcagtatgtactagtactaacaatcatcttcattacctaaataaattacttatcatcagttctcaataacaagttttttttttcgaggatgttctggataacaacttaatcaaccctgtcatgtaaactctcctgttaggctgttaacctgAaaaatgatttctcctcttcctttcccatgcttagaattcaggactccctcttatcatgctattcaaatattttttcgtgaaacatgaaacatcgtttgtttgaagtttgaagactaaaattgtgtgtggtgtgtgagcgtgtgtctcttctatatgatctaaaagaaacatccttcattttttttcctctctttttttttcttgttctctgctttcccgctgtatttactcccctccaacttaatacaatgatacgcaaaagcttatgcttattcgcgccAaaaaaaaagagttttgaactagcaaaaaaaactggcaaacagtcttcaatttgaaaggtgttgcaggaggtgaacagtagcgattAaaaatttgcaggcaacaaattctagtcaagcataatatggaccgtgctactaccaatagaacaagaatcttagccgctctttaattaagcacacgaattaataatactccacccgtttcaaaatgtttgataccgttgactttttagcacatgtttgaccgttcgtcttattcaaaaacttttgtgaaatatgtaaaattatatgcctacataaaaatatatttaacaataaatcaaataataggaaacgaattaataattactcaaatttattttttgaataagacgaacggtcaaacatatgctaaaaagtcaacggcgtcaaacatttcgaaacggagggagcaagtagtactccactcttttaatcaagcacaagcatgatcaacaaaataatcactcaccgtcaccgagtccgcgaagccgaagctggagaggtcggcggcggagaacatggcgaacggcggcgggtgcgggccgccgccgggcttctggtcggcggcggcgtcggcgtcgtcctcccccctctcgccgtggaagaacgcctcgaagttcagctccgacgggcacttcttcatctcctcgtgtggtctctgctgctgctgctgattcttccagaggtggtgaactggtggtggtggcgtcggagtcggatgcttttagagatgccccagcgaggcagatcaccgagggaggagaaggagaagaaggagaagggaaagctcctctttttcgccccccacaaagctgagctgcccacccgtgcg
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| CDS seq | atgaagaagtgcccgtcggagctgaacttcgaggcgttcttccacggcgagaggggggaggacgacgccgacgccgccgccgaccagaagcccggcggcggcccgcacccgccgccgttcgccatcaccatcactggggtcattcccaatcacatatggccccagtcccagagcctcaacgcacggcatcctgcagtctacacaattgagtcgcaatcatcaatctgtgcagcagcaagtcccacgtcagctaccactctgaacatgaaggagagccaaactctgggaggcacaagtggttcagattctgacagtgagtcgctgttggatatagagggcggtccatgcgaacaaagcacaaacccactggacgttaagagaatgagaaggatggtttccaaccgggagtctgctcgtcgatcaaggaagagaaagcaagctcacttagctgatctcgagacgcaggttgaccagctccggggcgaaaacgcatcgcttttcaagcagttgacagatgccaatcagcaattcacgacggcggtcacggacaacagaatcctcaaatcagacgtggaggccctccgggtcaaggtgaagatggcggaggacatggtggcgcggggggcgctgtcgtgcggcctcggccacctgggcgggctgtcgccggcgctgaacccccggcagggggcgtgccgcgtccccgacgtgctcaccgggctggactacgccggcgacgaccccttcaccgggctgtccccgccggagcaggtgcagatgcccggcggtggcgaggtgggtgacgcctggggctgggacaaccactccaatggcgccatgtccaagtga
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| Protein seq | MKKCPSELNFEAFFHGERGEDDADAAADQKPGGGPHPPPFAITITGVIPNHIWPQSQSLNARHPAVYTIESQSSICAAASPTSATTLNMKESQTLGGTSGSDSDSESLLDIEGGPCEQSTNPLDVKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQLTDANQQFTTAVTDNRILKSDVEALRVKVKMAEDMVARGALSCGLGHLGGLSPALNPRQGACRVPDVLTGLDYAGDDPFTGLSPPEQVQMPGGGEVGDAWGWDNHSNGAMSK |
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| Function | bZIP transcription factor RISBZ3 [UniProtKB/Swiss-Prot:Q6ETX0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0011540 | OsNaBo_02g0011540.01 | Chr02 | 9503016 | 9505894 | - | NAM | ||
| CDS seq | atgaagaagtgcccgtcggagctgaacttcgaggcgttcttccacggcgagaggggggaggacgacgccgacgccgccgccgaccagaagcccggcggcggcccgcacccgccgccgttcgccatcaccatcactggggtcattcccaatcacatatggccccagtcccagagcctcaacgcacggcatcctgcagtctacacaattgagtcgcaatcatcaatctgtgcagcagcaagtcccacgtcagctaccactctgaacatgaaggagagccaaactctgggaggcacaagtggttcagattctgacagtgagtcgctgttggatatagagggcggtccatgcgaacaaagcacaaacccactggacgttaagagaatgagaaggatggtttccaaccgggagtctgctcgtcgatcaaggaagagaaagcaagctcacttagctgatctcgagacgcaggttgaccagctccggggcgaaaacgcatcgcttttcaagcagttgacagatgccaatcagcaattcacgacggcggtcacggacaacagaatcctcaaatcagacgtggaggccctccgggtcaaggtgaagatggcggaggacatggtggcgcggggggcgctgtcgtgcggcctcggccacctgggcgggctgtcgccggcgctgaacccccggcagggggcgtgccgcgtccccgacgtgctcaccgggctggactacgccggcgacgaccccttcaccgggctgtccccgccggagcaggtgcagatgcccggcggtggcgaggtgggtgacgcctggggctgggacaaccactccaatggcgccatgtccaagtga
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| Protein seq | MKKCPSELNFEAFFHGERGEDDADAAADQKPGGGPHPPPFAITITGVIPNHIWPQSQSLNARHPAVYTIESQSSICAAASPTSATTLNMKESQTLGGTSGSDSDSESLLDIEGGPCEQSTNPLDVKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQLTDANQQFTTAVTDNRILKSDVEALRVKVKMAEDMVARGALSCGLGHLGGLSPALNPRQGACRVPDVLTGLDYAGDDPFTGLSPPEQVQMPGGGEVGDAWGWDNHSNGAMSK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0011540 | OsNaBo_02g0011540.02 | Chr02 | 9503003 | 9506083 | - | IsoSeq | ||
| CDS seq | cacgggtgggcagctcagctttgtggggggcgaaaaagaggagctttcccttctccttcttctccttctcctccctcggtgatctgcctcgctggggcatctctaaaagcatccgactccgacgccaccaccaccagttcaccacctctggaagaatcagcagcagcagcagagaccacacgaggagatgaagaagtgcccgtcggagctgaacttcgaggcgttcttccacggcgagaggggggaggacgacgccgacgccgccgccgaccagaagcccggcggcggcccgcacccgccgccgttcgccatgttctccgccgccgacctctccagcttcggcttcgcggactcggtgacgagcaccatcactggggtcattcccaatcacatatggccccagtcccagagcctcaacgcacggcatcctgcagtctacac
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| Protein seq | HGWAAQLCGGRKRGAFPSPSSPSPPSVICLAGASLKASDSDATTTSSPPLEESAAAAETTRGDEEVPVGAELRGVLPRREGGGRRRRRRRPEARRRPAPAAVRHVLRRRPLQLRLRGLGDEHHHWGHSQSHMAPVPEPQRTASCSLH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 29.669062 | 4.971496 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0266800 | RBH | 0.804404 | 0.000000 | 11.094086 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g16680 | RBH | 0.506233 | 0.000000 | 2.842439 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0266800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0011610 | RBH | 0.572987 | 12.046521 | 7.601482 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0011740 | RBH | 0.389799 | 6.542394 | 3.272115 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0011590 | RBH | 0.0 | 29.050116 | 7.656066 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0011450 | RBH | 0.0 | 0.514286 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0011420 | RBH | 0.825579 | 15.897723 | 11.723997 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0152300 | RBH | 3.596167 | 20.167986 | 37.3758085 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0011260 | RBH | 0.000000 | 1.397376 | 1.144766 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0161000 | RBH | 10.2511745 | 50.529972 | 10.027617 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0011760 | RBH | 0.239773 | 0.364428 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0011360 | RBH | 0.000000 | 12.713599 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0011750 | RBH | 2.269489 | 9.908141 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0011690 | RBH | 0.366620 | 2.283453 | 2.428555 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0011370 | RBH | 0.000000 | 18.835896 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G011750 | RBH | 0.000000 | 3.142813 | 2.315001 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0005760 | SBH | 0.139647 | 22.443289 | 11.546505 |
