Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0007970 | OGI:02017000 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:5672339-5676013 | ||||||||
| Gene Symbol | RLS1, LRD43, NOE2 | ||||||||||
| DNA seq | ctactttttcctcctactgctgctggctcctttttcagaaatgcaagcttccacagaggcaactagacttgcttccagatcatgacctcttatctctgatctcactttcctcagaatctgttgcttcatgactgatctctcagcagactggacgttcttgcacatgttcaaCccctgcacgtatcttgataccgctccactgaaagacccacctgctttctcgagtgccacaaatttctcgatgatttgggacgagagcattctttcgatgcaaggtttggttccgaccaccgcaatgtctaccagaagctgcattgttagttcctttgtctttgaagacttgcggtcaagcaagttaaccaatttttcaatggttcctgcttgtaaaaatctctgtaatacaagtgatccccccttcgcaaagataatctggtgaagggcatagtatgctgaatcctggagatcgttgatgttgcactgcatcatgtcaattagctgatgaacaatgttagcctctaagaacctatggacatatggttcccctccagtgcaggctaatttcatcaccagaaaagcagtgtgagacctcacttggttgctttcaatgtctctccgttgcagcagcagtgccaacccatcggacatattgcttcccaaaaggagatcttgcacccttgaatcattagccctctcagcgagaggtaataaaccttggatcgcctcaatgttatctttgttgtctctttgcagtatcttgtgaagaatcaactcaaaagattgttgaggctttggtgatggagttacattttggtcaaataaaacaaatctctccaaactgagacgagcatgccaaggcaaatgagtcaacactccaggtcccatgcacccctgaagtggcgcaccaagttcacagaatgtttttagcatgataatcgcatgatgctgtgagatctcagaaccactgcctaggagaacaagaagcttcttgtcaattcctgattcgatcattgtctcaacagcccttaactttcccacctttatcaaagatgctagagttgtaaacacaatttcgtgccattcttcattctcaggagagagtaatttcgcaatttggtccataggaatggttgccaaaatttcatcagcagttgtagcatcaacatgctcagatatcttggcaagaacagtagaaacattggctagagtagaagaatcttcacagccacgaagaacatgaattaatttatccacagaacctgctgtttcaagagactgggcaagcttagcataatctccttggaaaaagattactgtaatagatttggtgacagtaacaatgagagatgttgaccccacagaaattaactccgctattcgaggactaagtattttgctgaagcgaagcctgctagcctcaaattcagatatggatttgcattccatgagagcttgggtggtgcttcctagtaaaatctctatctccatgaactctagcaaagaaaataatgatcttatcttctgttcagctcgctcTtttgcgctctctttgccaaaaatgaaaagccaaggagacaccaatgcagcatattcaggaaatgaaccgaacaaaagagtatgaacagcgttgtctgttttactctcgaggtaaagcgaaaccatgtcatgcatatgatacatcgattggtcttccagtttgataatgagtgagccttctactagTttcgagaccacgagggggaataaagtgtcctgcatgagtgctgaccacatggattcaaggcaagcctctggaacaggttcatcccatgagatagctgcaagcaccatgaaaaaccttcttgaattttctggcattgcttctaagctgaactcaaaagacccaaagatggtcaatgtggtttccacttctttctcattcacatatgaaaccggtccaggtgcacaagttgcatatgtggaaaggttggagattgctctatcccatttttcgactctggtctcctttctgagagccttacccatgacagcaactgtaaGgggatggtggccacaacgatccagcaagtcgtacgcaacaggctgtaaagaacaggaatgttaaccatacaaacccataaaactaggtctttagtagttctaagttctaagttacatattgaacatctcttgtatgacagatacacatataactaattactttaagtagactaacatgaatataaatagttggctaactatatttgtgtactttccatgttaaacatgaaggatattaaaatgaaaccaatgttgaaatgtaaacacatatacaatccacatgaagatgataccttagctgcagggtgcaaaacaattttatcaggtaaaactaaaataggctaaagtgcaggagtattcagtaaccatgaaagatgcaaatagaagagtataccgggagctcttcgacagtaagaaggctatgatagagaagaatgtccttgccaaTttctttgatatcatctttggatatttccaccttttcagcttctgcaatctcataaattgcctcatccctcgttgtcacaagataccggcaatcattatcatataggtttgtgaagcgatcaactatgtcttgctcccagacatcatcaagtaggatcagcatgctccttcctaccaatgcagtctgaagcaagtaacagacatcttcaagatctttgcccacatcctcattgacagtcatggaaccaatctgcacaagaaatttacatattttccgaacaagacgcttgtggtattcatccctattaccattgcatgccgctctactgcaccaccgcccaaaactaagctcaattgcaccatccacaaaattaccaggcgggtcagaagctatttgtcgagcaagacacgacttcccaataccagataacccgacaatcaggacaactcgatgactaccatcagtgataagcagctccctgacatagctgcacttctttgacactggatagccatgctccgacttgactctcaccaaggatggcgtactcttagctgtagacgctatgacattgcccacactctctgttagcttctgtaactcaagccaccagttgagatcatccctgatcagctgaacatacttcatcagagggtcccctgtcaccgagctccacacaactctggccaagcccttcttccctttgcctttcttcaacacccgcctcgcctttgtgatgttggcatggagctggtccatcagcttgcctaggctctggagctgacgctcgagctgcggcgcgtgcatcttgtgcgcgtgcttctgcttggattgctgcatcaacagcccaaggtcggacacaaaatcctcaagaacctggagcctcctgggagcctcggcgaagtcggcagccgcctgctccagcgcgccgaccgcggtgagcatcgcggacaccagctgggtcgccgaggcaagaacattcacagcatccatatggcctcgcttccggtcaaacaaaccactagagcaagagcaacgaagctccaatctctcccctagcaagaattcaatactcagagctggctgcgacaatccgacgaacacatggcgtgcgttctcctggccgccaccaactccaacaccgaatcctccggtcccgttccttcatcaacctcgacatcaccaaccat
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| CDS seq | atggttggtgatgtcgaggttgatgaaggaacgggaccggaggattcggtgttggagttggtggcggccaggagaacgcacgccattggtttgtttgaccggaagcgaggccatatggatgctgtgaatgttcttgcctcggcgacccagctggtgtccgcgatgctcaccgcggtcggcgcgctggagcaggcggctgccgacttcgccgaggctcccaggaggctccaggttcttgaggattttgtgtccgaccttgggctgttgatgcagcaatccaagcagaagcacgcgcacaagatgcacgcgccgcagctcgagcgtcagctccagagcctaggcaagctgatggaccagctccatgccaacatcacaaaggcgaggcgggtgttgaagaaaggcaaagggaagaagggcttggccagagttgtgtggagctcggtgacaggggaccctctgatgaagtatgttcagctgatcagggatgatctcaactggtggcttgagttacagaagctaacagagagtgtgggcaatgtcatagcgtctacagctaagagtacgccatccttggtgagagtcaagtcggagcatggctatccagtgtcaaagaagtgcagctatgtcagggagctgcttatcactgatggtagtcatcgagttgtcctgattgtcgggttatctggtattgggaagtcgtgtcttgctcgacaaatagcttctgacccgcctggtaattttgtggatggtgcaattgagcttagttttgggcggtggtgcagtagagcggcatgcaatggtaatagggatgaataccacaagcgtcttgttcggaaaatatgtaaatttcttgtgcagattggttccatgactgtcaatgaggatgtgggcaaagatcttgaagatgtctgttacttgcttcagactgcattggtaggaaggagcatgctgatcctacttgatgatgtctgggagcaagacatagttgatcgcttcacaaacctatatgataatgattgccggtatcttgtgacaacgagggatgaggcaatttatgagattgcagaagctgaaaaggtggaaatatccaaagatgatatcaaagaaAttggcaaggacattcttctctatcatagccttcttactgtcgaagagctcccgcctgttgcgtacgacttgctggatcgttgtggccaccatcccCttacagttgctgtcatgggtaaggctctcagaaaggagaccagagtcgaaaaatgggatagagcaatctccaacctttccacatatgcaacttgtgcacctggaccggtttcatatgtgaatgagaaagaagtggaaaccacattgaccatctttgggtcttttgagttcagcttagaagcaatgccagaaaattcaagaaggtttttcatggtgcttgcagctatctcatgggatgaacctgttccagaggcttgccttgaatccatgtggtcagcactcatgcaggacactttattccccctcgtggtctcgaaActagtagaaggctcactcattatcaaactggaagaccaatcgatgtatcatatgcatgacatggtttcgctttacctcgagagtaaaacagacaacgctgttcatactcttttgttcggttcatttcctgaatatgctgcattggtgtctccttggcttttcatttttggcaaagagagcgcaaaAgagcgagctgaacagaagataagatcattattttctttgctagagttcatggagatagagattttactaggaagcaccacccaagctctcatggaatgcaaatccatatctgaatttgaggctagcaggcttcgcttcagcaaaatacttagtcctcgaatagcggagttaatttctgtggggtcaacatctctcattgttactgtcaccaaatctattacagtaatctttttccaaggagattatgctaagcttgcccagtctcttgaaacagcaggttctgtggataaattaattcatgttcttcgtggctgtgaagattcttctactctagccaatgtttctactgttcttgccaagatatctgagcatgttgatgctacaactgctgatgaaattttggcaaccattcctatggaccaaattgcgaaattactctctcctgagaatgaagaatggcacgaaattgtgtttacaactctagcatctttgataaaggtgggaaagttaagggctgttgagacaatgatcgaatcaggaattgacaagaagcttcttgttctcctaggcagtggttctgagatctcacagcatcatgcgattatcatgctaaaaacattctgtgaacttggtgcgccacttcaggggtgcatgggacctggagtgttgactcatttgccttggcatgctcgtctcagtttggagagatttgttttatttgaccaaaatgtaactccatcaccaaagcctcaacaatcttttgagttgattcttcacaagatactgcaaagagacaacaaagataacattgaggcgatccaaggtttattacctctcgctgagagggctaatgattcaagggtgcaagatctccttttgggaagcaatatgtccgatgggttggcactgctgctgcaacggagagacattgaaagcaaccaagtgaggtctcacactgcttttctggtgatgaaattagcctgcactggaggggaaccatatgtccataggttcttagaggctaacattgttcatcagctaattgacatgatgcagtgcaacatcaacgatctccaggattcagcatactatgcccttcaccagattatctttgcgaaggggggatcacttgtattacagagatttttacaagcaggaaccattgaaaaattggttaacttgcttgaccgcaagtcttcaaagacaaaggaactaacaatgcagcttctggtagacattgcggtggtcggaaccaaaccttgcatcgaaagaatgctctcgtcccaaatcatcgagaaatttgtggcactcgagaaagcaggtgggtctttcagtggagcggtatcaagatacgtgcagggGttgaacatgtgcaagaacgtccagtctgctgagagatcagtcatgaagcaacagattctgaggaaagtgagatcagagataagaggtcatgatctggaagcaagtctagttgcctctgtggaagcttgcatttctgaaaaaggagccagcagcagtaggaggaaaaagtag
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| Protein seq | MVGDVEVDEGTGPEDSVLELVAARRTHAIGLFDRKRGHMDAVNVLASATQLVSAMLTAVGALEQAAADFAEAPRRLQVLEDFVSDLGLLMQQSKQKHAHKMHAPQLERQLQSLGKLMDQLHANITKARRVLKKGKGKKGLARVVWSSVTGDPLMKYVQLIRDDLNWWLELQKLTESVGNVIASTAKSTPSLVRVKSEHGYPVSKKCSYVRELLITDGSHRVVLIVGLSGIGKSCLARQIASDPPGNFVDGAIELSFGRWCSRAACNGNRDEYHKRLVRKICKFLVQIGSMTVNEDVGKDLEDVCYLLQTALVGRSMLILLDDVWEQDIVDRFTNLYDNDCRYLVTTRDEAIYEIAEAEKVEISKDDIKEIGKDILLYHSLLTVEELPPVAYDLLDRCGHHPLTVAVMGKALRKETRVEKWDRAISNLSTYATCAPGPVSYVNEKEVETTLTIFGSFEFSLEAMPENSRRFFMVLAAISWDEPVPEACLESMWSALMQDTLFPLVVSKLVEGSLIIKLEDQSMYHMHDMVSLYLESKTDNAVHTLLFGSFPEYAALVSPWLFIFGKESAKERAEQKIRSLFSLLEFMEIEILLGSTTQALMECKSISEFEASRLRFSKILSPRIAELISVGSTSLIVTVTKSITVIFFQGDYAKLAQSLETAGSVDKLIHVLRGCEDSSTLANVSTVLAKISEHVDATTADEILATIPMDQIAKLLSPENEEWHEIVFTTLASLIKVGKLRAVETMIESGIDKKLLVLLGSGSEISQHHAIIMLKTFCELGAPLQGCMGPGVLTHLPWHARLSLERFVLFDQNVTPSPKPQQSFELILHKILQRDNKDNIEAIQGLLPLAERANDSRVQDLLLGSNMSDGLALLLQRRDIESNQVRSHTAFLVMKLACTGGEPYVHRFLEANIVHQLIDMMQCNINDLQDSAYYALHQIIFAKGGSLVLQRFLQAGTIEKLVNLLDRKSSKTKELTMQLLVDIAVVGTKPCIERMLSSQIIEKFVALEKAGGSFSGAVSRYVQGLNMCKNVQSAERSVMKQQILRKVRSEIRGHDLEASLVASVEACISEKGASSSRRKK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0007970 | OsNaBo_02g0007970.01 | Chr02 | 5672339 | 5676013 | - | NAM | ||
| CDS seq | atggttggtgatgtcgaggttgatgaaggaacgggaccggaggattcggtgttggagttggtggcggccaggagaacgcacgccattggtttgtttgaccggaagcgaggccatatggatgctgtgaatgttcttgcctcggcgacccagctggtgtccgcgatgctcaccgcggtcggcgcgctggagcaggcggctgccgacttcgccgaggctcccaggaggctccaggttcttgaggattttgtgtccgaccttgggctgttgatgcagcaatccaagcagaagcacgcgcacaagatgcacgcgccgcagctcgagcgtcagctccagagcctaggcaagctgatggaccagctccatgccaacatcacaaaggcgaggcgggtgttgaagaaaggcaaagggaagaagggcttggccagagttgtgtggagctcggtgacaggggaccctctgatgaagtatgttcagctgatcagggatgatctcaactggtggcttgagttacagaagctaacagagagtgtgggcaatgtcatagcgtctacagctaagagtacgccatccttggtgagagtcaagtcggagcatggctatccagtgtcaaagaagtgcagctatgtcagggagctgcttatcactgatggtagtcatcgagttgtcctgattgtcgggttatctggtattgggaagtcgtgtcttgctcgacaaatagcttctgacccgcctggtaattttgtggatggtgcaattgagcttagttttgggcggtggtgcagtagagcggcatgcaatggtaatagggatgaataccacaagcgtcttgttcggaaaatatgtaaatttcttgtgcagattggttccatgactgtcaatgaggatgtgggcaaagatcttgaagatgtctgttacttgcttcagactgcattggtaggaaggagcatgctgatcctacttgatgatgtctgggagcaagacatagttgatcgcttcacaaacctatatgataatgattgccggtatcttgtgacaacgagggatgaggcaatttatgagattgcagaagctgaaaaggtggaaatatccaaagatgatatcaaagaaAttggcaaggacattcttctctatcatagccttcttactgtcgaagagctcccgcctgttgcgtacgacttgctggatcgttgtggccaccatcccCttacagttgctgtcatgggtaaggctctcagaaaggagaccagagtcgaaaaatgggatagagcaatctccaacctttccacatatgcaacttgtgcacctggaccggtttcatatgtgaatgagaaagaagtggaaaccacattgaccatctttgggtcttttgagttcagcttagaagcaatgccagaaaattcaagaaggtttttcatggtgcttgcagctatctcatgggatgaacctgttccagaggcttgccttgaatccatgtggtcagcactcatgcaggacactttattccccctcgtggtctcgaaActagtagaaggctcactcattatcaaactggaagaccaatcgatgtatcatatgcatgacatggtttcgctttacctcgagagtaaaacagacaacgctgttcatactcttttgttcggttcatttcctgaatatgctgcattggtgtctccttggcttttcatttttggcaaagagagcgcaaaAgagcgagctgaacagaagataagatcattattttctttgctagagttcatggagatagagattttactaggaagcaccacccaagctctcatggaatgcaaatccatatctgaatttgaggctagcaggcttcgcttcagcaaaatacttagtcctcgaatagcggagttaatttctgtggggtcaacatctctcattgttactgtcaccaaatctattacagtaatctttttccaaggagattatgctaagcttgcccagtctcttgaaacagcaggttctgtggataaattaattcatgttcttcgtggctgtgaagattcttctactctagccaatgtttctactgttcttgccaagatatctgagcatgttgatgctacaactgctgatgaaattttggcaaccattcctatggaccaaattgcgaaattactctctcctgagaatgaagaatggcacgaaattgtgtttacaactctagcatctttgataaaggtgggaaagttaagggctgttgagacaatgatcgaatcaggaattgacaagaagcttcttgttctcctaggcagtggttctgagatctcacagcatcatgcgattatcatgctaaaaacattctgtgaacttggtgcgccacttcaggggtgcatgggacctggagtgttgactcatttgccttggcatgctcgtctcagtttggagagatttgttttatttgaccaaaatgtaactccatcaccaaagcctcaacaatcttttgagttgattcttcacaagatactgcaaagagacaacaaagataacattgaggcgatccaaggtttattacctctcgctgagagggctaatgattcaagggtgcaagatctccttttgggaagcaatatgtccgatgggttggcactgctgctgcaacggagagacattgaaagcaaccaagtgaggtctcacactgcttttctggtgatgaaattagcctgcactggaggggaaccatatgtccataggttcttagaggctaacattgttcatcagctaattgacatgatgcagtgcaacatcaacgatctccaggattcagcatactatgcccttcaccagattatctttgcgaaggggggatcacttgtattacagagatttttacaagcaggaaccattgaaaaattggttaacttgcttgaccgcaagtcttcaaagacaaaggaactaacaatgcagcttctggtagacattgcggtggtcggaaccaaaccttgcatcgaaagaatgctctcgtcccaaatcatcgagaaatttgtggcactcgagaaagcaggtgggtctttcagtggagcggtatcaagatacgtgcagggGttgaacatgtgcaagaacgtccagtctgctgagagatcagtcatgaagcaacagattctgaggaaagtgagatcagagataagaggtcatgatctggaagcaagtctagttgcctctgtggaagcttgcatttctgaaaaaggagccagcagcagtaggaggaaaaagtag
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| Protein seq | MVGDVEVDEGTGPEDSVLELVAARRTHAIGLFDRKRGHMDAVNVLASATQLVSAMLTAVGALEQAAADFAEAPRRLQVLEDFVSDLGLLMQQSKQKHAHKMHAPQLERQLQSLGKLMDQLHANITKARRVLKKGKGKKGLARVVWSSVTGDPLMKYVQLIRDDLNWWLELQKLTESVGNVIASTAKSTPSLVRVKSEHGYPVSKKCSYVRELLITDGSHRVVLIVGLSGIGKSCLARQIASDPPGNFVDGAIELSFGRWCSRAACNGNRDEYHKRLVRKICKFLVQIGSMTVNEDVGKDLEDVCYLLQTALVGRSMLILLDDVWEQDIVDRFTNLYDNDCRYLVTTRDEAIYEIAEAEKVEISKDDIKEIGKDILLYHSLLTVEELPPVAYDLLDRCGHHPLTVAVMGKALRKETRVEKWDRAISNLSTYATCAPGPVSYVNEKEVETTLTIFGSFEFSLEAMPENSRRFFMVLAAISWDEPVPEACLESMWSALMQDTLFPLVVSKLVEGSLIIKLEDQSMYHMHDMVSLYLESKTDNAVHTLLFGSFPEYAALVSPWLFIFGKESAKERAEQKIRSLFSLLEFMEIEILLGSTTQALMECKSISEFEASRLRFSKILSPRIAELISVGSTSLIVTVTKSITVIFFQGDYAKLAQSLETAGSVDKLIHVLRGCEDSSTLANVSTVLAKISEHVDATTADEILATIPMDQIAKLLSPENEEWHEIVFTTLASLIKVGKLRAVETMIESGIDKKLLVLLGSGSEISQHHAIIMLKTFCELGAPLQGCMGPGVLTHLPWHARLSLERFVLFDQNVTPSPKPQQSFELILHKILQRDNKDNIEAIQGLLPLAERANDSRVQDLLLGSNMSDGLALLLQRRDIESNQVRSHTAFLVMKLACTGGEPYVHRFLEANIVHQLIDMMQCNINDLQDSAYYALHQIIFAKGGSLVLQRFLQAGTIEKLVNLLDRKSSKTKELTMQLLVDIAVVGTKPCIERMLSSQIIEKFVALEKAGGSFSGAVSRYVQGLNMCKNVQSAERSVMKQQILRKVRSEIRGHDLEASLVASVEACISEKGASSSRRKK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.293491 | 7.741461 | 4.298172 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0203500 | RBH | 2.299203 | 2.580619 | 2.290962 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g10900 | RBH | 1.554841 | 1.735681 | 0.589738 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0203500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0007910 | RBH | 0.280191 | 12.444955 | 2.284312 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0008030 | RBH | 0.000000 | 3.736014 | 1.208465 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0007810 | RBH | 0.518526 | 6.967851 | 3.070730 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0007770 | RBH | 0.204364 | 0.180424 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0007840 | RBH | 7.596294 | 15.781964 | 10.639456 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0097400 | RBH | 4.307671 | 15.8443205 | 3.8341165 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0007780 | RBH | 0.298529 | 0.745800 | 0.866678 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0100800 | RBH | 5.9671445 | 12.761524 | 6.258252 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0008210 | RBH | 0.000000 | 0.074881 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0007800 | RBH | 0.658821 | 10.482982 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0008100 | RBH | 2.708100 | 7.569047 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0008080 | RBH | 0.355359 | 0.951574 | 0.630782 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0007850 | RBH | 0.180807 | 6.100160 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G007950 | RBH | 0.272564 | 2.753768 | 1.280862 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
