Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0007610 | OGI:02016400 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:5419680-5421511 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acaacgtgcttgagaatttggaatttggatacgcttggcgagtaagctcgctgctggtttcctctttcatggctagcgaggccatcgtctccggcgtcgtcgccgacatggccggcaggctcgtgtccctcgtcgccggccacctgctggccgaccggaggggcgtcgacgacaagctgcggagggtgcggcgcctggtcgtcaggatcgagagcgcggtggaggcggccgaggcgaggcggatcaccgggcgcgcgctcctcgcgtggctctcggacctcgtcgacggcgcgcaccagggccgctacttcctcgacgcgttccccgtggtggcggaccacgacggcgacggcgacgtcgaggtggcgccgtcgtcgttcaaccccgccaagcggctgcgcgtcgcggcgaggaggctggtgttccgcgacggcggcggcgcggctgcggagctcgacggcgtccttgccgacctagagagtgtctccggcgatctcaccgggtttatcatgatgcttcagagctgcccgccggcgatgcaccggccgctggccacgaacatctacgcggacagccagatgttcggccggcaggtcgagaggcgccgcgtcttcgacttcttgctgcaagacggcgacggcgatgacggcggcgagccggcggcggcggagctcggcgtcctctcgatcatcggccgttccggcctcgggaagaccacgctcgtgcagcacgtctgcgacgaccccgccgtgcgccgccgcttctcgtggatcatcctggtggacttccactgtgtgagcctcatggcggccggcgagacgactgctctactgcgctccctgttcgccgccgccgccgccaccgccgctggcacggggagcactagcatctccggcgtcggcgagaagctgagacttctcgagaagaatctgcgcggcgagaggctgctcatcgtgttcgacaacgtcgacgcgcggaggaggccggcggtcgacgcgatcatgcgggcgctgcggcgcggcagccggcgagggagcaaggtcatcgtgacgagcagcgacgccaggcacgtcgcgggcctcgccaccgcggcggacaccatcaccctccgccccccgccgccggcggagtactggctcttcttcaaggcgcacgcgttcggcggcgcggacgacgccgacgccgacccgcggctggcggcggcggggcaagccatcgccgagaggctccgcctgcgcgcgtcctacttcggcgggaaggcgctgggcgccctcctccggtggcgccccgaccaccggctctggcgcagggtgctgagcagcggcgccgccgacctgccatgcctcggcaccggtgactacatcgccgcggcggccggctgcctgttcccgccgcacctgaacctccacggcgtcaccgtctcccgctcgccgctgagaggtctcgtcggcctccatggctcctccttgatgactcctcctcccaccgactccggccgccgctcgccggagttgcccgtgttgctgtgcaagtcagtcttcccttcctactgcctctactacgccgcgcattgcaccatcgatgatacggaaatcaaacagtaattttcttttttttttctgcacagatactgcaaaaaaaattgtgcactgttcgtggatagtgatctgagttgtagtgatctgaagaaaaccaggcggctgctgcttgttgtcactttcattgattcagcttgttgatagcgtctcaaatcgtccagtgatttcttttacatatagataagtgtaagatgagaagatgagatgatggcaggagaggaggaaatggttttc
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| CDS seq | atggctagcgaggccatcgtctccggcgtcgtcgccgacatggccggcaggctcgtgtccctcgtcgccggccacctgctggccgaccggaggggcgtcgacgacaagctgcggagggtgcggcgcctggtcgtcaggatcgagagcgcggtggaggcggccgaggcgaggcggatcaccgggcgcgcgctcctcgcgtggctctcggacctcgtcgacggcgcgcaccagggccgctacttcctcgacgcgttccccgtggtggcggaccacgacggcgacggcgacgtcgaggtggcgccgtcgtcgttcaaccccgccaagcggctgcgcgtcgcggcgaggaggctggtgttccgcgacggcggcggcgcggctgcggagctcgacggcgtccttgccgacctagagagtgtctccggcgatctcaccgggtttatcatgatgcttcagagctgcccgccggcgatgcaccggccgctggccacgaacatctacgcggacagccagatgttcggccggcaggtcgagaggcgccgcgtcttcgacttcttgctgcaagacggcgacggcgatgacggcggcgagccggcggcggcggagctcggcgtcctctcgatcatcggccgttccggcctcgggaagaccacgctcgtgcagcacgtctgcgacgaccccgccgtgcgccgccgcttctcgtggatcatcctggtggacttccactgtgtgagcctcatggcggccggcgagacgactgctctactgcgctccctgttcgccgccgccgccgccaccgccgctggcacggggagcactagcatctccggcgtcggcgagaagctgagacttctcgagaagaatctgcgcggcgagaggctgctcatcgtgttcgacaacgtcgacgcgcggaggaggccggcggtcgacgcgatcatgcgggcgctgcggcgcggcagccggcgagggagcaaggtcatcgtgacgagcagcgacgccaggcacgtcgcgggcctcgccaccgcggcggacaccatcaccctccgccccccgccgccggcggagtactggctcttcttcaaggcgcacgcgttcggcggcgcggacgacgccgacgccgacccgcggctggcggcggcggggcaagccatcgccgagaggctccgcctgcgcgcgtcctacttcggcgggaaggcgctgggcgccctcctccggtggcgccccgaccaccggctctggcgcagggtgctgagcagcggcgccgccgacctgccatgcctcggcaccggtgactacatcgccgcggcggccggctgcctgttcccgccgcacctgaacctccacggcgtcaccgtctcccgctcgccgctgagaggtctcgtcggcctccatggctcctccttgatgactcctcctcccaccgactccggccgccgctcgccggagttgcccgtgttgctgtgcaaatactgcaaaaaaaattgtgcactgttcgtggatagtgatctgagttgtagtgatctgaagaaaaccaggcggctgctgcttgttgtcactttcattgattcagcttgttga
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| Protein seq | MASEAIVSGVVADMAGRLVSLVAGHLLADRRGVDDKLRRVRRLVVRIESAVEAAEARRITGRALLAWLSDLVDGAHQGRYFLDAFPVVADHDGDGDVEVAPSSFNPAKRLRVAARRLVFRDGGGAAAELDGVLADLESVSGDLTGFIMMLQSCPPAMHRPLATNIYADSQMFGRQVERRRVFDFLLQDGDGDDGGEPAAAELGVLSIIGRSGLGKTTLVQHVCDDPAVRRRFSWIILVDFHCVSLMAAGETTALLRSLFAAAAATAAGTGSTSISGVGEKLRLLEKNLRGERLLIVFDNVDARRRPAVDAIMRALRRGSRRGSKVIVTSSDARHVAGLATAADTITLRPPPPAEYWLFFKAHAFGGADDADADPRLAAAGQAIAERLRLRASYFGGKALGALLRWRPDHRLWRRVLSSGAADLPCLGTGDYIAAAAGCLFPPHLNLHGVTVSRSPLRGLVGLHGSSLMTPPPTDSGRRSPELPVLLCKYCKKNCALFVDSDLSCSDLKKTRRLLLVVTFIDSAC |
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| Function | Disease resistance protein RGA2 [UniProtKB/Swiss-Prot:Q7XBQ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0007610 | OsNaBo_02g0007610.01 | Chr02 | 5419680 | 5421511 | + | NAM | ||
| CDS seq | atggctagcgaggccatcgtctccggcgtcgtcgccgacatggccggcaggctcgtgtccctcgtcgccggccacctgctggccgaccggaggggcgtcgacgacaagctgcggagggtgcggcgcctggtcgtcaggatcgagagcgcggtggaggcggccgaggcgaggcggatcaccgggcgcgcgctcctcgcgtggctctcggacctcgtcgacggcgcgcaccagggccgctacttcctcgacgcgttccccgtggtggcggaccacgacggcgacggcgacgtcgaggtggcgccgtcgtcgttcaaccccgccaagcggctgcgcgtcgcggcgaggaggctggtgttccgcgacggcggcggcgcggctgcggagctcgacggcgtccttgccgacctagagagtgtctccggcgatctcaccgggtttatcatgatgcttcagagctgcccgccggcgatgcaccggccgctggccacgaacatctacgcggacagccagatgttcggccggcaggtcgagaggcgccgcgtcttcgacttcttgctgcaagacggcgacggcgatgacggcggcgagccggcggcggcggagctcggcgtcctctcgatcatcggccgttccggcctcgggaagaccacgctcgtgcagcacgtctgcgacgaccccgccgtgcgccgccgcttctcgtggatcatcctggtggacttccactgtgtgagcctcatggcggccggcgagacgactgctctactgcgctccctgttcgccgccgccgccgccaccgccgctggcacggggagcactagcatctccggcgtcggcgagaagctgagacttctcgagaagaatctgcgcggcgagaggctgctcatcgtgttcgacaacgtcgacgcgcggaggaggccggcggtcgacgcgatcatgcgggcgctgcggcgcggcagccggcgagggagcaaggtcatcgtgacgagcagcgacgccaggcacgtcgcgggcctcgccaccgcggcggacaccatcaccctccgccccccgccgccggcggagtactggctcttcttcaaggcgcacgcgttcggcggcgcggacgacgccgacgccgacccgcggctggcggcggcggggcaagccatcgccgagaggctccgcctgcgcgcgtcctacttcggcgggaaggcgctgggcgccctcctccggtggcgccccgaccaccggctctggcgcagggtgctgagcagcggcgccgccgacctgccatgcctcggcaccggtgactacatcgccgcggcggccggctgcctgttcccgccgcacctgaacctccacggcgtcaccgtctcccgctcgccgctgagaggtctcgtcggcctccatggctcctccttgatgactcctcctcccaccgactccggccgccgctcgccggagttgcccgtgttgctgtgcaaatactgcaaaaaaaattgtgcactgttcgtggatagtgatctgagttgtagtgatctgaagaaaaccaggcggctgctgcttgttgtcactttcattgattcagcttgttga
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| Protein seq | MASEAIVSGVVADMAGRLVSLVAGHLLADRRGVDDKLRRVRRLVVRIESAVEAAEARRITGRALLAWLSDLVDGAHQGRYFLDAFPVVADHDGDGDVEVAPSSFNPAKRLRVAARRLVFRDGGGAAAELDGVLADLESVSGDLTGFIMMLQSCPPAMHRPLATNIYADSQMFGRQVERRRVFDFLLQDGDGDDGGEPAAAELGVLSIIGRSGLGKTTLVQHVCDDPAVRRRFSWIILVDFHCVSLMAAGETTALLRSLFAAAAATAAGTGSTSISGVGEKLRLLEKNLRGERLLIVFDNVDARRRPAVDAIMRALRRGSRRGSKVIVTSSDARHVAGLATAADTITLRPPPPAEYWLFFKAHAFGGADDADADPRLAAAGQAIAERLRLRASYFGGKALGALLRWRPDHRLWRRVLSSGAADLPCLGTGDYIAAAAGCLFPPHLNLHGVTVSRSPLRGLVGLHGSSLMTPPPTDSGRRSPELPVLLCKYCKKNCALFVDSDLSCSDLKKTRRLLLVVTFIDSAC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.481801 | 0.0 | 0.449145 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0199200 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g10550 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0199200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0007550 | RBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0007700 | RBH | 0.0 | 0.0 | 0.050306 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0007480 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0007440 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0007510 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0093000 | RBH | 0.805015 | 7.0128785 | 1.02532 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0007450 | RBH | 0.0 | 0.207527 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0096600 | RBH | 1.410275 | 8.777918 | 0.0065635 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0007870 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0007470 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0007760 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0007750 | RBH | 0.118646 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0007510 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G007610 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
