Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0007270 | OGI:02015790 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:5191081-5196487 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtcgttgctgccctttgggtgcaagaaatcccacaagccgtcgctctcatcctacccgatgattgatgcgtatttcttgccccctttccgcttatccgcccacgaaaagggcgccgatttctactcttcttctccccaagaatcactggctcagtggttagtggtgactagtcatcggactcggagggagtgatctgtgcgaggggataaggagggcttcgtgttcttgaaattcagttgttgcggcttgctttccgtgcaattcttggttgagatcgcccaatcattgggggcataaatggaggtggaattcttggaggattccattgatttgatgcgtctggtagtgtggtggtgttcttgagtcttgattagtgaggagggagtggttcttggcgggaatggcggcggcggcggttggggtcgtggtggtggtggtggtgttcttggccgccgccgtcgatggcgtcgcggggaaggactgcacgaacgggttcccggggctgacggcgtcgcacacggagcgcgcggccgcggcggcggagctgcggccggacggcgaggtcgaggcggcgcgggtgctcgatctcctcctcccccacggccacggccacggcgacgaccacgacggcgaccgccacctcacccccaccgacgagtccacctggatgtctctcatgccgcggaggctcctcgcgagccccgcctcttccccgcggcgcgacgcgttcgactggctcatgctctaccgcaacctccggggctccggctccggcgccggcgccatcgccgcgagcggcggcgcgctcctggcggaggcgtcgctgcacgacgtgcggctgcagccgggcaccgtgtactggcaggcccagcagaccaacctggagtacctgctcctcctcgacgtcgaccgcctcgtgtggagcttccgcacgcaggccggccttccggcgtccggggcgccctacggcgggtgggagggccccggcgtcgagctccggggacacttcgtcggtgcgccaccgccatttctcggcatcacttgcacagcgaaatcgcgcgattggtctgaatttgcggtggctttgctttgctgcctgttctttgcaggacactacctgagtgctactgccaagatgtgggcgagcacacacaatgaaactctccaggcgaagatgtcatcggtcgtcgacgcgctccatgattgccagaagaagatgggatcggggtacttgtcggccttcccctcggagttcttcgacagggttgagtccatcaaggctgtttgggctccttactatacaattcacaaggtatatgggggaatttcagttcctagtgttgcttgatcactatattatatcattgtcttgctacacgagtgcaattcttggtttgcagattatgcaaggtcttcttgatcagtatacggtggccgggaattctaaggcccttgatttggtggtcgggatggccaattacttcagtgaccgtgtgaagaatgtcatacagaaatacagtattgagaggcattgggcttcactcaatgaggagagtggtgggatgaatgatgtgctctatcagctctacacgataacggtgattgtcggtttgttatgagataggaatactgccttgattaatgcaattttctctagtggagttgctaacttttctagttttcttgcatgggcagaatgatcagaagcatctgactctggcccatctttttgataagccatgttttcttgggttgcttgcagttcaggtctgctgatttattttcttacctgcttttgttcttatattctgtatcatctatgaacatgtgtcaatttatggtgaatgactcagaccaacttacattcaacttcaaccttgtttgtcatatagcaatttacctgttttactaactgtcaaaaattatggattacctaatatccagttttgagttggcacttggcagtttgaaaatcaatataactacatgtttgcgtgccaaatggatctattatttcaattctactgttcattttgtcattatatttttcccactatagcaaagacactacctaaaatgaagtttagaacttttggcttgggtgtctgattccagaggatacaagaataatagtattcctattgcagtaatgtctctgactgataaatcttgagtgtgcttcaattcaggccgacagtatttcaggcttccattccaatacacacattccagttgttattggtgcacagatgagatatgaagttactggtgatcttctttacaaggtaaaagaacacaaacctttctttctggatatttactccatatgcatacatgaagatgaattatctgtccagggatatggatatgaatgtacaatgctaatagtttagattatcatattggttacttttttttagtggtcatattggctgcttggctgaaaggaaaaggatagctttattctgcttacagattatgcatatttcctgctgatattggtaaatttccagatatgggcctggaagtgtgatagcataatccggggaaaatagtatatttcttgctaacccatgctttctctaggtaaactatagtttttgggcagtattatacctttcattacctattagctctgtagttatccatatgcagtccctttttttgtcagctgtatgtcaaagccatgtgttggttttttactggagtttttttatgctgttttttactggagttatactatctgtttttctttctaattcttttcactaacatcatttgagagaaaagctgattgtaatcataattctcatgaaacagcaaattgcaacgtttttcatggataccatcaattcttctcatagctatgctactgggggcacatctgctggtgaattttggtaattttactctagattctgaattcataatcaatagtatatttatctttgatgtatgactatctacttctatataattattcaggaccaatccaaagcgtttagctgatactctgagtactgagaatgaggaatcttgcacaacctacaacatgctcaaggttcacaatatcaaaccactctcctgaacattcaatctctctctctctctcaatgggttcaatgcaatctactgcaggtttctcgcaacctattcagatggacaaaggaattatcatatgcagactattatgaaagggcactgataaatggtgttttaagcatccaaagagggactgatcccggggtgatgatttacatgctacctcaggcccctggacggtctaaagcggtttcctatcatggttggggaacaaagtatgactccttctggtgttgttatgggacaggtaaataaaatgcttctgagttctgcttatttaacactgctgcttttacatgaaaatattgcggtaacagtttgtcaaattaataccgtgattttagtattactttgcttgtgttttcattcgaagttgtgaaaatttgaattgaaaggcaatttatcaggtggcctgtttctttatggatcttctatttcatttacagggatagaatccttttcgaaacttggcgattccatttactttgaggagaaaggagatagaccggtgctaaacatcattcagtacataccaagtgcttataactggaaagcagctgggcttactgttaatcaacaactaaagccaatcagctctttggacatgtttcttcaagtttcactctccacttctgcaaaggtaatttcttttaatgtacgttacatgaaaatcagatgaaagaagcagcagttagcttcctctattctacttatgcagacaaatggtcagtctgccacattgaatgtgagaataccatcatggacatctgccaatggcgcaaaagcaactctaaatgacaacgatttaggattaatgtctccaggtacaatcttttgagtgcatgaacaaaaaaatatatccatttcaatcgtccttgatcatgttttagacaagttcttactttattgttttgtgggcagggtctttcctttcaatctccaaacagtggaactcagatgatcatttatcactacagttccctattacactaaggactgaagcaataaaaggtcaaaactcaacttttaggaaatttcttctgttttcaagtatgcatcaaagtgttcagatgatcatttatcactacagttccctattacactaaggactgaagcaataaaaggtcaaaactcaacttttaggaaatttcttctattttcaagtatgcatcaatgtgttttgcttagttcacatacaattgtttgacatttcaaccgaaaattatcaattaacataaaaaatcataagctaatagtgaatatgaaactgtgacgatgtgacatacaccaactattgtgatttattttagtcagaatattcatctcaatgttaactgctatgctgtgacatcagatgatcggccagaatatgcatctcttcaagcaatcctattcgggccatttgttctagctggcctgtcaactggtgattggaatgcagaagccggcaacaccagcgcaatttcagactggatatctccagtcccttcatcctacaactcacagctggtgaccttcacacaagaatccagtgggaagaccttcgtcctctcgagcgcgaatggctctctcgcaatgcaagaacggccgacggtcgatggcactgataccgccatccacgcgacattcagagtacaccctcaggactcagcagggcagcttgacacccagggtgcaaccttgaaggggacctctgtgcagatagaaccatttgacctcccaggaacggtgatcaccaacaaccttacccaatccgcgcaaaagagttcagattccctcttcaacattgtacctgggctagatggaaacccaaactcggtctccctcgagctcgggaccaaaccgggatgcttcctggtgacaggcgtggattactccgtgggtacaaagattcaggtcagttgcaagagttctcttccaagcatcaacgggattttcgagcaggccgcgagctttgtgcaggctgctccattgaggcagtaccatcctatcagcttcattgcaaagggggtgaagaggaacttcctgcttgaaccattgtacagcctgagagacgaattctacacggtttacttcaaccttggggcttgaaccttgaaagaggttactcattagtagaaagaatcaagaattcagaataatggttgtccttactatactgtaatttagaatatgcagccaaagaggaaatgttttgtttcttctgaaattgtaggataatttttactgagttcagtgcaatgttgtgcaattatgagttttttttctgtggcattttcgtatcttggtaattgaaaatgctgc
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| CDS seq | atggcggcggcggcggttggggtcgtggtggtggtggtggtgttcttggccgccgccgtcgatggcgtcgcggggaaggactgcacgaacgggttcccggggctgacggcgtcgcacacggagcgcgcggccgcggcggcggagctgcggccggacggcgaggtcgaggcggcgcgggtgctcgatctcctcctcccccacggccacggccacggcgacgaccacgacggcgaccgccacctcacccccaccgacgagtccacctggatgtctctcatgccgcggaggctcctcgcgagccccgcctcttccccgcggcgcgacgcgttcgactggctcatgctctaccgcaacctccggggctccggctccggcgccggcgccatcgccgcgagcggcggcgcgctcctggcggaggcgtcgctgcacgacgtgcggctgcagccgggcaccgtgtactggcaggcccagcagaccaacctggagtacctgctcctcctcgacgtcgaccgcctcgtgtggagcttccgcacgcaggccggccttccggcgtccggggcgccctacggcgggtgggagggccccggcgtcgagctccggggacacttcgtcggacactacctgagtgctactgccaagatgtgggcgagcacacacaatgaaactctccaggcgaagatgtcatcggtcgtcgacgcgctccatgattgccagaagaagatgggatcggggtacttgtcggccttcccctcggagttcttcgacagggttgagtccatcaaggctgtttgggctccttactatacaattcacaagattatgcaaggtcttcttgatcagtatacggtggccgggaattctaaggcccttgatttggtggtcgggatggccaattacttcagtgaccgtgtgaagaatgtcatacagaaatacagtattgagaggcattgggcttcactcaatgaggagagtggtgggatgaatgatgtgctctatcagctctacacgataacgaatgatcagaagcatctgactctggcccatctttttgataagccatgttttcttgggttgcttgcagttcaggccgacagtatttcaggcttccattccaatacacacattccagttgttattggtgcacagatgagatatgaagttactggtgatcttctttacaagcaaattgcaacgtttttcatggataccatcaattcttctcatagctatgctactgggggcacatctgctggtgaattttggaccaatccaaagcgtttagctgatactctgagtactgagaatgaggaatcttgcacaacctacaacatgctcaaggtttctcgcaacctattcagatggacaaaggaattatcatatgcagactattatgaaagggcactgataaatggtgttttaagcatccaaagagggactgatcccggggtgatgatttacatgctacctcaggcccctggacggtctaaagcggtttcctatcatggttggggaacaaagtatgactccttctggtgttgttatgggacagggatagaatccttttcgaaacttggcgattccatttactttgaggagaaaggagatagaccggtgctaaacatcattcagtacataccaagtgcttataactggaaagcagctgggcttactgttaatcaacaactaaagccaatcagctctttggacatgtttcttcaagtttcactctccacttctgcaaagacaaatggtcagtctgccacattgaatgtgagaataccatcatggacatctgccaatggcgcaaaagcaactctaaatgacaacgatttaggattaatgtctccagggtctttcctttcaatctccaaacagtggaactcagatgatcatttatcactacagttccctattacactaaggactgaagcaataaaagatgatcggccagaatatgcatctcttcaagcaatcctattcgggccatttgttctagctggcctgtcaactggtgattggaatgcagaagccggcaacaccagcgcaatttcagactggatatctccagtcccttcatcctacaactcacagctggtgaccttcacacaagaatccagtgggaagaccttcgtcctctcgagcgcgaatggctctctcgcaatgcaagaacggccgacggtcgatggcactgataccgccatccacgcgacattcagagtacaccctcaggactcagcagggcagcttgacacccagggtgcaaccttgaaggggacctctgtgcagatagaaccatttgacctcccaggaacggtgatcaccaacaaccttacccaatccgcgcaaaagagttcagattccctcttcaacattgtacctgggctagatggaaacccaaactcggtctccctcgagctcgggaccaaaccgggatgcttcctggtgacaggcgtggattactccgtgggtacaaagattcaggtcagttgcaagagttctcttccaagcatcaacgggattttcgagcaggccgcgagctttgtgcaggctgctccattgaggcagtaccatcctatcagcttcattgcaaagggggtgaagaggaacttcctgcttgaaccattgtacagcctgagagacgaattctacacggtttacttcaaccttggggcttga
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| Protein seq | MAAAAVGVVVVVVVFLAAAVDGVAGKDCTNGFPGLTASHTERAAAAAELRPDGEVEAARVLDLLLPHGHGHGDDHDGDRHLTPTDESTWMSLMPRRLLASPASSPRRDAFDWLMLYRNLRGSGSGAGAIAASGGALLAEASLHDVRLQPGTVYWQAQQTNLEYLLLLDVDRLVWSFRTQAGLPASGAPYGGWEGPGVELRGHFVGHYLSATAKMWASTHNETLQAKMSSVVDALHDCQKKMGSGYLSAFPSEFFDRVESIKAVWAPYYTIHKIMQGLLDQYTVAGNSKALDLVVGMANYFSDRVKNVIQKYSIERHWASLNEESGGMNDVLYQLYTITNDQKHLTLAHLFDKPCFLGLLAVQADSISGFHSNTHIPVVIGAQMRYEVTGDLLYKQIATFFMDTINSSHSYATGGTSAGEFWTNPKRLADTLSTENEESCTTYNMLKVSRNLFRWTKELSYADYYERALINGVLSIQRGTDPGVMIYMLPQAPGRSKAVSYHGWGTKYDSFWCCYGTGIESFSKLGDSIYFEEKGDRPVLNIIQYIPSAYNWKAAGLTVNQQLKPISSLDMFLQVSLSTSAKTNGQSATLNVRIPSWTSANGAKATLNDNDLGLMSPGSFLSISKQWNSDDHLSLQFPITLRTEAIKDDRPEYASLQAILFGPFVLAGLSTGDWNAEAGNTSAISDWISPVPSSYNSQLVTFTQESSGKTFVLSSANGSLAMQERPTVDGTDTAIHATFRVHPQDSAGQLDTQGATLKGTSVQIEPFDLPGTVITNNLTQSAQKSSDSLFNIVPGLDGNPNSVSLELGTKPGCFLVTGVDYSVGTKIQVSCKSSLPSINGIFEQAASFVQAAPLRQYHPISFIAKGVKRNFLLEPLYSLRDEFYTVYFNLGA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0007270 | OsNaBo_02g0007270.01 | Chr02 | 5191081 | 5196487 | + | NAM | ||
| CDS seq | atggcggcggcggcggttggggtcgtggtggtggtggtggtgttcttggccgccgccgtcgatggcgtcgcggggaaggactgcacgaacgggttcccggggctgacggcgtcgcacacggagcgcgcggccgcggcggcggagctgcggccggacggcgaggtcgaggcggcgcgggtgctcgatctcctcctcccccacggccacggccacggcgacgaccacgacggcgaccgccacctcacccccaccgacgagtccacctggatgtctctcatgccgcggaggctcctcgcgagccccgcctcttccccgcggcgcgacgcgttcgactggctcatgctctaccgcaacctccggggctccggctccggcgccggcgccatcgccgcgagcggcggcgcgctcctggcggaggcgtcgctgcacgacgtgcggctgcagccgggcaccgtgtactggcaggcccagcagaccaacctggagtacctgctcctcctcgacgtcgaccgcctcgtgtggagcttccgcacgcaggccggccttccggcgtccggggcgccctacggcgggtgggagggccccggcgtcgagctccggggacacttcgtcggacactacctgagtgctactgccaagatgtgggcgagcacacacaatgaaactctccaggcgaagatgtcatcggtcgtcgacgcgctccatgattgccagaagaagatgggatcggggtacttgtcggccttcccctcggagttcttcgacagggttgagtccatcaaggctgtttgggctccttactatacaattcacaagattatgcaaggtcttcttgatcagtatacggtggccgggaattctaaggcccttgatttggtggtcgggatggccaattacttcagtgaccgtgtgaagaatgtcatacagaaatacagtattgagaggcattgggcttcactcaatgaggagagtggtgggatgaatgatgtgctctatcagctctacacgataacgaatgatcagaagcatctgactctggcccatctttttgataagccatgttttcttgggttgcttgcagttcaggccgacagtatttcaggcttccattccaatacacacattccagttgttattggtgcacagatgagatatgaagttactggtgatcttctttacaagcaaattgcaacgtttttcatggataccatcaattcttctcatagctatgctactgggggcacatctgctggtgaattttggaccaatccaaagcgtttagctgatactctgagtactgagaatgaggaatcttgcacaacctacaacatgctcaaggtttctcgcaacctattcagatggacaaaggaattatcatatgcagactattatgaaagggcactgataaatggtgttttaagcatccaaagagggactgatcccggggtgatgatttacatgctacctcaggcccctggacggtctaaagcggtttcctatcatggttggggaacaaagtatgactccttctggtgttgttatgggacagggatagaatccttttcgaaacttggcgattccatttactttgaggagaaaggagatagaccggtgctaaacatcattcagtacataccaagtgcttataactggaaagcagctgggcttactgttaatcaacaactaaagccaatcagctctttggacatgtttcttcaagtttcactctccacttctgcaaagacaaatggtcagtctgccacattgaatgtgagaataccatcatggacatctgccaatggcgcaaaagcaactctaaatgacaacgatttaggattaatgtctccagggtctttcctttcaatctccaaacagtggaactcagatgatcatttatcactacagttccctattacactaaggactgaagcaataaaagatgatcggccagaatatgcatctcttcaagcaatcctattcgggccatttgttctagctggcctgtcaactggtgattggaatgcagaagccggcaacaccagcgcaatttcagactggatatctccagtcccttcatcctacaactcacagctggtgaccttcacacaagaatccagtgggaagaccttcgtcctctcgagcgcgaatggctctctcgcaatgcaagaacggccgacggtcgatggcactgataccgccatccacgcgacattcagagtacaccctcaggactcagcagggcagcttgacacccagggtgcaaccttgaaggggacctctgtgcagatagaaccatttgacctcccaggaacggtgatcaccaacaaccttacccaatccgcgcaaaagagttcagattccctcttcaacattgtacctgggctagatggaaacccaaactcggtctccctcgagctcgggaccaaaccgggatgcttcctggtgacaggcgtggattactccgtgggtacaaagattcaggtcagttgcaagagttctcttccaagcatcaacgggattttcgagcaggccgcgagctttgtgcaggctgctccattgaggcagtaccatcctatcagcttcattgcaaagggggtgaagaggaacttcctgcttgaaccattgtacagcctgagagacgaattctacacggtttacttcaaccttggggcttga
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| Protein seq | MAAAAVGVVVVVVVFLAAAVDGVAGKDCTNGFPGLTASHTERAAAAAELRPDGEVEAARVLDLLLPHGHGHGDDHDGDRHLTPTDESTWMSLMPRRLLASPASSPRRDAFDWLMLYRNLRGSGSGAGAIAASGGALLAEASLHDVRLQPGTVYWQAQQTNLEYLLLLDVDRLVWSFRTQAGLPASGAPYGGWEGPGVELRGHFVGHYLSATAKMWASTHNETLQAKMSSVVDALHDCQKKMGSGYLSAFPSEFFDRVESIKAVWAPYYTIHKIMQGLLDQYTVAGNSKALDLVVGMANYFSDRVKNVIQKYSIERHWASLNEESGGMNDVLYQLYTITNDQKHLTLAHLFDKPCFLGLLAVQADSISGFHSNTHIPVVIGAQMRYEVTGDLLYKQIATFFMDTINSSHSYATGGTSAGEFWTNPKRLADTLSTENEESCTTYNMLKVSRNLFRWTKELSYADYYERALINGVLSIQRGTDPGVMIYMLPQAPGRSKAVSYHGWGTKYDSFWCCYGTGIESFSKLGDSIYFEEKGDRPVLNIIQYIPSAYNWKAAGLTVNQQLKPISSLDMFLQVSLSTSAKTNGQSATLNVRIPSWTSANGAKATLNDNDLGLMSPGSFLSISKQWNSDDHLSLQFPITLRTEAIKDDRPEYASLQAILFGPFVLAGLSTGDWNAEAGNTSAISDWISPVPSSYNSQLVTFTQESSGKTFVLSSANGSLAMQERPTVDGTDTAIHATFRVHPQDSAGQLDTQGATLKGTSVQIEPFDLPGTVITNNLTQSAQKSSDSLFNIVPGLDGNPNSVSLELGTKPGCFLVTGVDYSVGTKIQVSCKSSLPSINGIFEQAASFVQAAPLRQYHPISFIAKGVKRNFLLEPLYSLRDEFYTVYFNLGA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.534684 | 21.355532 | 11.227681 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0195500 | RBH | 3.920737 | 2.549784 | 9.697628 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g10190 | RBH | 2.217530 | 2.023725 | 2.017709 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0195500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0007230 | RBH | 1.363106 | 56.278645 | 12.848494 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0007380 | RBH | 0.292006 | 6.692423 | 5.580813 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0007160 | RBH | 1.954862 | 20.849571 | 18.993681 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0007120 | RBH | 0.377713 | 0.754919 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0007190 | RBH | 8.036153 | 14.397765 | 36.267349 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0089200 | RBH | 14.7543275 | 23.3842505 | 10.495531 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0007130 | RBH | 0.448613 | 0.616677 | 1.802341 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0092100 | RBH | 11.757261 | 14.7321365 | 19.7138625 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0007540 | RBH | 0.337281 | 0.300386 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0007150 | RBH | 0.276927 | 13.165974 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0007440 | RBH | 4.293795 | 40.077301 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0007430 | RBH | 0.589830 | 1.586261 | 2.778503 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0007190 | RBH | 0.053354 | 8.766631 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G007280 | RBH | 1.316810 | 0.526850 | 6.675448 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0022130 | RBH | 1.166034 | 1.987115 | 17.607481 |
