Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0005400 | OGI:02011760 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:3699593-3702828 | ||||||||
| Gene Symbol | PPR | ||||||||||
| DNA seq | tatagtagcagtgaccacacaagcttacctgagcttgagagctcagcattatcttctcagtcttgttctcccttcacagtttcagatttatgctctttggctgtcaagactcaagagcagtctgttgccttcaccttgtgcttatgtgagttagtttctgtcttctctcaattattactagtacttgattcttcagaggtcatgtgggtttgaccaattagcacattgcagttttctgtttgatgtccatggtgaatttgtggatacaccttatggttttcaaactagtgttttggaaacaacttacatgctacgcattgaaatgtttgctttctgaatatcttgggtagaagttctcaaagaacatataccagctctattgataaccttccagtatgctgacattccttctcccaccattttgcaggttgaggatagaggctctgttgtattatcctgtcacaaggccaagatggaaaattaatgctagtcaagatgccacgcaagaaactggcctgattgatgcagaaattaattcttatgcctatagtgaaaggaagaacaggaaatacaacggcgcctacatcgataaagatggtgtatcaaggaccttcgatcgaaagaaaatatcaagaaaaaggggtaaatgctaaatatattatctttccagttgttcttccctttgttcttttgttcagcacttctacattccatgaagtatctaatcagcatatgtttgcaagtaaattgttttccctccttcaaaatgatctaatgtcttcaggtttcatgcagggggtgctatgagaggccggggctggaagtatggctctggttttgtagatggagtcttccctgtgctcagtccaatggcacaggatatcttagaatttgttcagaagggaacagacgttgcaaaaatctgggaatctttggataacattccttccacacacaatctttttgatgatcttgtgaatgtcgctgtccaattccgtatgaacaagaaatgggatctgatcattccagtaagtctgaaccctgcacattctcatcattaactaatcggatattcacatctcaatgtttcggttacctttgatcagtattttgatgtttaatttgtcaaaagtggatataggtctgcgagtggatcctgtacaggagctcattccgtcctgacatcatctgctacaacctgctcatagaatcctatggcaagaagcgtcagctgaacaaggcagagtcaatctacatggctcttctggaagctcagtgtgtgccaactgaagacacctatgctcttctcctgcgcgcttactgcaacgctggatcgctgcaccgagcagaaggcgtgatctcggagatgcgcgagcacgggattcctccaagtatgcagctcaattcccctatattgccaagagaaagaagcttgtaggttgacatagttgcataactcatgtcaagaacaatcttgcagatgctactgtatataatgcttacttggatggattactgaaggcaagatgtaccgaaaaggcggtcgaggtgtaccaaaggatgaagagagaacggtgcagagctaacacggagacattcaccctgatgatcaatgtgtacgggaaggtcagaattcagagcacaatattgtttttcagttcactgtaaaaatcttttcatttctctttctttgaaaacttacctctgaagaatttctgacatatattttttcatggtcaatttgaaaggcaaagcaaccaatgtcatcgatgaaagttttcaacgagatgaagtcgattgggtgcaagcctaatatctgcacttacactgccctggtgaatgcatttgcgagggaaggcctgtgcgagaaggctgaagaagtgttcgaggagatgcagcaggcagggcacgagcctgacgtgtatgcttacaatgccctcatggaagcttacaggtgaatatcaaattagcatatcagtcatccatggcttcacgagcccaagtttctgatcacaaaactccagtgaaatttgatcagatttttttgtaagtttgaattagcaattaatagcttgcaacctttcaatgcacccatagccgcgctggattgccgcaaggcgcatcggagatcttctccttgatgcagcacatggggtgtgagcctgacagagcttcatacaacatcttggtagatgcatatggaagagccggccttcatgaaggtacattttgcagttggtgatggaaaattttggccaattttgtggtcaaagaaaccaagaacatgagttccatgatgctactatgaactctgaaagtgaaagcctccgaatatatataattttgcccctgtctgaactctgaatatactctctccatttcaaaatgtacgacgccgtcccaaaataaggcaacggcgttatacattttgaaaaggaggtagtagtataattttgccactgtctgaactctgaactctggaagtagtgacagcttcttctgagaatgtataaatattcggtgttttcagatgcggaggcggtgttcgaggagctgaagcagcgggggatgtcgccgacgatgaagtcccacatgctgctgctggcggcgcacgccaggtccggcaacgcgacgaggtgcgaggaggtgatggcgcagctgcacaagtccggcctcaccccggacaccttcgcgctgaacgccatgctcaacgcctacgcccgcgccggccgcctcgacgacatggagcgcctcctcgccgccatggagcgccgcggcgacgccgacgtgggcacgtacaacgtggcggtgaacgcgtacgggcgcgccgggtacgtggggaggatggaggcggcgttcgcggcggtggtggcgagggggctcgccgccgacgtggtgacgtggacggcgaggatgggggcgtacgcgaggaggaaggagtacgggcggtgcgtggggatggtggaggagatggtggacgccggctgctacccggacgccggcacggcgagggtgctgctggcggcgtgctccgacgagcgccaggtggagcaggtcaccgccatcatcaggtccatgcacaagaagcccaagacactcttcaccatataataatAaaaaaaaacccaacactttgcatatataattgcattattattacatgtataataatacagtataaatgtatattacaatgctaccttagttttcttttaatgtatgccgccattgattct
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| CDS seq | atgctctttggctgtcaagactcaagagcagtctgttgccttcaccttgtgcttatgttgaggatagaggctctgttgtattatcctgtcacaaggccaagatggaaaattaatgctagtcaagatgccacgcaagaaactggcctgattgatgcagaaattaattcttatgcctatagtgaaaggaagaacaggaaatacaacggcgcctacatcgataaagatggtgtatcaaggaccttcgatcgaaagaaaatatcaagaaaaagggggggtgctatgagaggccggggctggaagtatggctctggttttgtagatggagtcttccctgtgctcagtccaatggcacaggatatcttagaatttgttcagaagggaacagacgttgcaaaaatctgggaatctttggataacattccttccacacacaatctttttgatgatcttgtgaatgtcgctgtccaattccgtatgaacaagaaatgggatctgatcattccagtctgcgagtggatcctgtacaggagctcattccgtcctgacatcatctgctacaacctgctcatagaatcctatggcaagaagcgtcagctgaacaaggcagagtcaatctacatggctcttctggaagctcagtgtgtgccaactgaagacacctatgctcttctcctgcgcgcttactgcaacgctggatcgctgcaccgagcagaaggcgtgatctcggagatgcgcgagcacgggattcctccaaatgctactgtatataatgcttacttggatggattactgaaggcaagatgtaccgaaaaggcggtcgaggtgtaccaaaggatgaagagagaacggtgcagagctaacacggagacattcaccctgatgatcaatgtgtacgggaaggcaaagcaaccaatgtcatcgatgaaagttttcaacgagatgaagtcgattgggtgcaagcctaatatctgcacttacactgccctggtgaatgcatttgcgagggaaggcctgtgcgagaaggctgaagaagtgttcgaggagatgcagcaggcagggcacgagcctgacgtgtatgcttacaatgccctcatggaagcttacagccgcgctggattgccgcaaggcgcatcggagatcttctccttgatgcagcacatggggtgtgagcctgacagagcttcatacaacatcttggtagatgcatatggaagagccggccttcatgaagatgcggaggcggtgttcgaggagctgaagcagcgggggatgtcgccgacgatgaagtcccacatgctgctgctggcggcgcacgccaggtccggcaacgcgacgaggtgcgaggaggtgatggcgcagctgcacaagtccggcctcaccccggacaccttcgcgctgaacgccatgctcaacgcctacgcccgcgccggccgcctcgacgacatggagcgcctcctcgccgccatggagcgccgcggcgacgccgacgtgggcacgtacaacgtggcggtgaacgcgtacgggcgcgccgggtacgtggggaggatggaggcggcgttcgcggcggtggtggcgagggggctcgccgccgacgtggtgacgtggacggcgaggatgggggcgtacgcgaggaggaaggagtacgggcggtgcgtggggatggtggaggagatggtggacgccggctgctacccggacgccggcacggcgagggtgctgctggcggcgtgctccgacgagcgccaggtggagcaggtcaccgccatcatcaggtccatgcacaagaagcccaagacactcttcaccatataa
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| Protein seq | MLFGCQDSRAVCCLHLVLMLRIEALLYYPVTRPRWKINASQDATQETGLIDAEINSYAYSERKNRKYNGAYIDKDGVSRTFDRKKISRKRGGAMRGRGWKYGSGFVDGVFPVLSPMAQDILEFVQKGTDVAKIWESLDNIPSTHNLFDDLVNVAVQFRMNKKWDLIIPVCEWILYRSSFRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLLAAMERRGDADVGTYNVAVNAYGRAGYVGRMEAAFAAVVARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTARVLLAACSDERQVEQVTAIIRSMHKKPKTLFTI |
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| Function | Pentatricopeptide repeat-containing protein At2g35130 [UniProtKB/Swiss-Prot:O82178] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0005400 | OsNaBo_02g0005400.01 | Chr02 | 3699593 | 3702736 | + | NAM | ||
| CDS seq | atgctctttggctgtcaagactcaagagcagtctgttgccttcaccttgtgcttatgttgaggatagaggctctgttgtattatcctgtcacaaggccaagatggaaaattaatgctagtcaagatgccacgcaagaaactggcctgattgatgcagaaattaattcttatgcctatagtgaaaggaagaacaggaaatacaacggcgcctacatcgataaagatggtgtatcaaggaccttcgatcgaaagaaaatatcaagaaaaagggggggtgctatgagaggccggggctggaagtatggctctggttttgtagatggagtcttccctgtgctcagtccaatggcacaggatatcttagaatttgttcagaagggaacagacgttgcaaaaatctgggaatctttggataacattccttccacacacaatctttttgatgatcttgtgaatgtcgctgtccaattccgtatgaacaagaaatgggatctgatcattccagtctgcgagtggatcctgtacaggagctcattccgtcctgacatcatctgctacaacctgctcatagaatcctatggcaagaagcgtcagctgaacaaggcagagtcaatctacatggctcttctggaagctcagtgtgtgccaactgaagacacctatgctcttctcctgcgcgcttactgcaacgctggatcgctgcaccgagcagaaggcgtgatctcggagatgcgcgagcacgggattcctccaaatgctactgtatataatgcttacttggatggattactgaaggcaagatgtaccgaaaaggcggtcgaggtgtaccaaaggatgaagagagaacggtgcagagctaacacggagacattcaccctgatgatcaatgtgtacgggaaggcaaagcaaccaatgtcatcgatgaaagttttcaacgagatgaagtcgattgggtgcaagcctaatatctgcacttacactgccctggtgaatgcatttgcgagggaaggcctgtgcgagaaggctgaagaagtgttcgaggagatgcagcaggcagggcacgagcctgacgtgtatgcttacaatgccctcatggaagcttacagccgcgctggattgccgcaaggcgcatcggagatcttctccttgatgcagcacatggggtgtgagcctgacagagcttcatacaacatcttggtagatgcatatggaagagccggccttcatgaagatgcggaggcggtgttcgaggagctgaagcagcgggggatgtcgccgacgatgaagtcccacatgctgctgctggcggcgcacgccaggtccggcaacgcgacgaggtgcgaggaggtgatggcgcagctgcacaagtccggcctcaccccggacaccttcgcgctgaacgccatgctcaacgcctacgcccgcgccggccgcctcgacgacatggagcgcctcctcgccgccatggagcgccgcggcgacgccgacgtgggcacgtacaacgtggcggtgaacgcgtacgggcgcgccgggtacgtggggaggatggaggcggcgttcgcggcggtggtggcgagggggctcgccgccgacgtggtgacgtggacggcgaggatgggggcgtacgcgaggaggaaggagtacgggcggtgcgtggggatggtggaggagatggtggacgccggctgctacccggacgccggcacggcgagggtgctgctggcggcgtgctccgacgagcgccaggtggagcaggtcaccgccatcatcaggtccatgcacaagaagcccaagacactcttcaccatataa
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| Protein seq | MLFGCQDSRAVCCLHLVLMLRIEALLYYPVTRPRWKINASQDATQETGLIDAEINSYAYSERKNRKYNGAYIDKDGVSRTFDRKKISRKRGGAMRGRGWKYGSGFVDGVFPVLSPMAQDILEFVQKGTDVAKIWESLDNIPSTHNLFDDLVNVAVQFRMNKKWDLIIPVCEWILYRSSFRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLLAAMERRGDADVGTYNVAVNAYGRAGYVGRMEAAFAAVVARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTARVLLAACSDERQVEQVTAIIRSMHKKPKTLFTI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0005400 | OsNaBo_02g0005400.02 | Chr02 | 3699624 | 3702828 | + | IsoSeq | ||
| CDS seq | agcttgagagctcagcattatcttctcagtcttgttctcccttcacagtttcagatttatgctctttggctgtcaagactcaagagcagtctgttgccttcaccttgtgcttatgttgaggatagaggctctgttgtattatcctgtcacaaggccaagatggaa |
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| Protein seq | SLRAQHYLLSLVLPSQFQIYALWLSRLKSSLLPSPCAYVEDRGSVVLSCHKAKME |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 3700620 | 3700734 | + | OsNaBo_02g0005400.02 | OsNaBo_02g0005400.01,OsNaBo_02g0005400.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 14.743099 | 1.306339 | 5.580707 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0170000 | RBH | 9.583899 | 9.953231 | 2.112302 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g07360 | RBH | 6.399085 | 6.253472 | 0.449746 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0170000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0005410 | RBH | 4.787884 | 3.622825 | 5.460461 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0005540 | RBH | 1.369348 | 0.0 | 4.150097 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0005350 | RBH | 12.794821 | 0.0 | 14.034783 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0005260 | RBH | 2.044212 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0005310 | RBH | 41.260517 | 0.0 | 8.211551 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0064800 | RBH | 13.4713125 | 2.0135595 | 0.1175685 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0005260 | RBH | 3.150257 | 0.000000 | 0.607443 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0067600 | RBH | 10.213714 | 0.8915615 | 3.0967245 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0005660 | RBH | 1.369220 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0005260 | RBH | 3.786717 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0005560 | RBH | 57.676071 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0005510 | RBH | 6.711293 | 0.0 | 1.564493 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0005290 | RBH | 3.572485 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G005430 | RBH | 4.141037 | 0.0 | 2.466160 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
