Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0047890 | OGI:01126230 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:43430378-43431400 | ||||||||
| Gene Symbol | GRP1, OsGRP1, - | ||||||||||
| DNA seq | acccgcttctcaaatcagtatttgattcggggatagatctagggTttaaagccaatgctgaattggagaccaaagctggtgccttacgcggcgactcccttcgggattctgtcccatccttcatctactgcccgtgcccgtgcctcttcctcctcctgccgctccaaactcttcattggcggtgcaaatttcctgcctacctgcttcgaattcgatatacattattgtgcaaacatcgtctttggttgaattagtgttagctctaattcgctgcaaccacgcaagcctagtgctaatacttgtaccgctctgtcttgttttgatttgcaggtctttcttacgatacaaatgagactgctctcaaggatgcTttctctcagcatggccatatTAttcaaggtacatctcaaACCatctgttcctttccgatgctatcaggtttctgaatctgtgtgtgtgaaccgacagcgtcctctccctgattgattaatgtgttgtgcagtgaaggtaatatgccacccagtgacagggaaatccaaagggtatggctttgtcaagtttgcctcagaAGatgaagctgctgcagcattgcacaagatggggggtgaggtaggtttgctctcttgtggtgctagacatggcacaagtcaggatgttttgctataatatgcattactttgctaatgcaattgttccatttgatgaaattgcttcaggtgattgatggaaggaacataagggtacactatgcaaacagcggatgatctggtgccacttcttcttggaggagtaagtgtcttgtcttgtgtcggggtgcatggagagctcaactaaggcatgtatttgtagatatgtagtctttcgttttcatggctagcaatatgcacctctgcatatgtgggtttcaatcttgtcccatctccccaatACacaagtcatttgatatatcatctaaacatttaTtctgtattctgctgaatttAgacaactggaatatatcaaagcaagcttaatttcccccag
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| CDS seq | atgctgaattggagaccaaagctggtgccttacgcggcgactcccttcgggattctgtcccatccttcatctactgcccgtgcccgtgcctcttcctcctcctgccgctccaaactcttcattggcggtctttcttacgatacaaatgagactgctctcaaggatgcTttctctcagcatggccatatTAttcaagtgaaggtaatatgccacccagtgacagggaaatccaaagggtatggctttgtcaagtttgcctcagaAGatgaagctgctgcagcattgcacaagatggggggtgaggtgattgatggaaggaacataagggtacactatgcaaacagcggatga |
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| Protein seq | MLNWRPKLVPYAATPFGILSHPSSTARARASSSSCRSKLFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHKMGGEVIDGRNIRVHYANSG |
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| Function | Glycine-rich RNA-binding protein 2, mitochondrial [UniProtKB/Swiss-Prot:Q9SVM8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0047890 | OsNaBo_01g0047890.01 | Chr01 | 43430406 | 43431398 | + | NAM | ||
| CDS seq | atgctgaattggagaccaaagctggtgccttacgcggcgactcccttcgggattctgtcccatccttcatctactgcccgtgcccgtgcctcttcctcctcctgccgctccaaactcttcattggcggtctttcttacgatacaaatgagactgctctcaaggatgcTttctctcagcatggccatatTAttcaagtgaaggtaatatgccacccagtgacagggaaatccaaagggtatggctttgtcaagtttgcctcagaAGatgaagctgctgcagcattgcacaagatggggggtgaggtgattgatggaaggaacataagggtacactatgcaaacagcggatga
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| Protein seq | MLNWRPKLVPYAATPFGILSHPSSTARARASSSSCRSKLFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHKMGGEVIDGRNIRVHYANSG |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0047890 | OsNaBo_01g0047890.02 | Chr01 | 43430378 | 43431400 | + | IsoSeq | ||
| CDS seq | atggctagcaatatgcacctctgcatatgtgggtttcaatcttgtcccatctccccaatACacaagtcatttgatatatcatctaaacatttaTtctgtattctgctgaatttAgacaactggaatatatcaaagcaa |
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| Protein seq | MASNMHLCICGFQSCPISPIHKSFDISSKHLFCILLNLDNWNISKQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 3.858622 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0974701 | RBH | 0.0 | 0.0 | 0.941194 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g74340 | RBH | 0.0 | 0.0 | 0.232034 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0974701 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0048880 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0048400 | RBH | 0.0 | 0.0 | 2.006214 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0048770 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0048320 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0047840 | RBH | 0.0 | 0.0 | 2.557818 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0707300 | RBH | 3.375755 | 4.358157 | 8.193552 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0047310 | RBH | 0.0 | 0.405348 | 0.278219 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0709000 | RBH | 1.9812585 | 0.7676535 | 19.3437105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0048000 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0047790 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0048070 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0048040 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0047810 | RBH | 0.0 | 1.464868 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G048130 | RBH | 0.000000 | 3.127976 | 0.688183 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
