Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0043350 | OGI:01117240 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:40020498-40031041 | ||||||||
| Gene Symbol | DCL3A, OsDCL3a | ||||||||||
| DNA seq | tgatcaaatgtttactggagtagttttTAtAagaaaaaaagtccggtaTGtttatgtaataatagaacaaggaaacatgatttgaaaatggtctctctttttatccttgaacaattggtttAacacctacaggctacaggggcatgatatttgcgtgtttatcgtcagcaacaactttgggggcttattcagtttctacgcagataacatatgggcaaaCacacataacaactgacacacaccagaaccaggtCAGctgttctccAttctttgggtaccctcttatcataattcagaaggtgaacacaggagaagatgtacaaagctgagtggtggcaagcaactggttggtctattattccaacttccaagcaactggttggcaagcaatcagttgtcgttccttcacacctcctggagttgcaaagtacctcgccgctgaagctcatagagcaagaacagggcagcagaatcctgtgagctcTtcttatctgcacggccatctcctgtgaggctgatcacatcagcatttggtatatgcaatgtaatggttgaagcgaaagcgaacgcttggggggtagctttctgggaggaaccaccaggggaggagcacacgctgctaaagctgaaccatgaaagattagtaagttattttgcactgttgcacagataagtaaATaaacaggcattcacaggctagtatgaaatcttagtaccttggttgtactttctcagattccattgtaggcattggccattgcaactttttacacaactcatataatgcaatgcgtggtcctcctttactcgttttcacaatcacgtgcactgaaacaagataaaattgttgaactttatcaaattgattcgttctacagacgtggatatatgaggtcctgatatgaatgaaagcacagagataacaacaaaaacagaaccactggtgattgagaacatacatggtttaccaagcaggggatcagaaatgttccttgaatcagctgcgtttttttccttgcttggTtttggagtctgtgtatccattgcatcgacatgcaaattgttgaagggattagTGCtgccacaatgcttttcAaattgttctgtcttgcttgcattctttgggattattagtcctttttcctgcaaaaacgaataaacctgtcagcttatattatcccctaaaagaacattgcaacatacACTaccaaaatagtggagcacaaaaataggacacctcgagatctttgagcagtaaggaagatgcatgcgctttcgcatcttttcTtttcttgctaaaaccttgcctcacaagaagcacctctttgagctgtacatcaagagtagccactactgtgtctccttgatctctacagttaattcctacaaaatacccatgtttgccacaccattcgataagctctctgtatggaggtaactccagattctcaggtgtgacaattggggaaagaaggggttcaaaaataccccagactacatccaaatcaagtttggtgtctaaaagaattgcacctgcaatactttctacaatatcaccaaggacctgtatcacaatagacaagtgaaatatgATatattaatatagataaattgtaaagatgattgtgtatgtcaatactggaagatgacactaaaaaggacacaggtaatgcaatgcaaataacttgtaaaagtatattaaatacatagccatgcaTttataagatgctctaacttaaagcaaatgtcattcatatgaactgaaatcctaatgtattgacttgattttattctgataagagcaaaccacacacatgttaaaacaaagaaagaacgtactttaggcccttttgggagtccatctgataacagttcaactttgtccatggatgaaccttccaacctattcacatattcagtaatttggtctaacagaagcccagaagaatgctggagaaagtgatggaagttgtgctttactgcaacttgtgcaaagttttcattattgactgatgcagaacgtaagtctgtcaactccccctcattagtgtctttatgactattgaaaagatatcttgttaacagaatgtctaagactgcatcaccgaggaactctaggcgctgttaaaaaaaacattagagaagttgggtaagttaagacACAatatgaaggaccagcaaaatagttttatgttcacccgatacctcgtagcagtattttgcacctaactcctgctgtgatgggtgagtcagagcctctaccaaaagacctttcaccgagaaagaatagcctagttttgcttcaagcatttcaaatacattgtcttttggaagataagtctgcacagaagcactcaatatggcctgcacaatcaagtcttcttcaatttcagccccgatgcccaaccatttgagaactgccatggctgctcttaaaccaccccctgcataatatgccccaataatagcctcaaaacaatcagcaatggttttggaacacatccatctgtgtcccttgtcacacgccttgcctagAACaatagccttgtcatcaatgatatgaatatcgtcagttacaacctcagattttacagggcattcacaaggagatggacgaatagagagctgtcctggtgctagccatcgacgaggatcaaatgcagcatcacgtacgtaaccctgttgattacattccaccaattgtcaacttagctcagacaattaaagctcagtgtgtccatgaaatacaaaatctctagacactgccaaatggtaatgtgaatttacctgtacattgcgttcaattccaagcttataaagtgtggcattacaaatcatatggcaccttatggatgatagctgcccctcatccttattaggaaatttcaggaaaagatgacaactcactgcatacttcaatacagagtctcccaataattctagacgctccatagagaaatcctcagagcacctaagcgttgtaatagcttccagaatctaaagaacatgtgccaatatatcatttcatattaaagaaacagaaaatgtatgtatagaagagagaggtataagcatctataccaggaaacttgatatattagaatcgctgtatccaatttcacttcttagttgactagctaacgttaatgactcaatccgATacatcaaagccggaaacaaatagaatgatctcaaaatttccacaggtaaatcaaggggaatcagcaactcaggaggcatgtggacacggttgcttgTtttatttacaactggtgtgccattactcatattctccacaacattacctacaaaaaagcaacagcaatcataaatattagatcagcctatatacgacataatcaacttggctacaaattacaaaaatAaaacagtttatgcaaaagtaaccagtctaacaaatgggtttatcactaatcatcgaagtacAaaaatagagatgcttcaaactaatcttgcttgAaaaaactaataagtaaccagttagggaagacaaacacaaggtagaaCaaaactaactataTagAAGAatagatacagaccttcatccctgaacttcgaggaaagaaggttgtgaggattatgactaggcttcaaaactagtagtggctgtgaggggtggcgaagtactatgccatacctgtaaacgaatatattagacaaaaaaagcaagattatacctgagcaagcacatggacatgcacaaaactatacacacttcTttttgaaatattctgcgaatgtccggaatttacaTTCtttcttatcagatgcaccatcaaaagcgctatcgccagataattcagtAatatcaagagcagtatatatcttcccagtgtgaactgctagaactaccatatctttgaggctgttagccttacacgacttgttagctaaatgaattaaatctccaacattttggtcagaatcaaatattccaagtaattctcttttattctcagaataaatccttctcataagtttaactgccgtagctgccgcatcaatgacactccaattaatacaaacgttggagtcaaaagaaggatttgttggtaaaagcaaatatacactcgcagtgttcCAcacaaatgtatcctctttattaagaatgaattccctcggagcattaggtacttttgatctagtaaacagctttccaaacaaaccattgaagagaagcccttgaaacaactttgcttgttccatctgagacaaaaaaaaaggataaggaatttttcagattaaatgggaaaaaaacaagagtaggggaCaaacttcatcatacctgttgagcatccaactcaagaagtccacaagaagaaactgaagttttgaccatcttgtcgtgcaaatataggtcaatctccaaagtagcgacttcatccggtaaagttgcatcaattaacagaacaaattcagagtaaatctgaccagcttggtcacaaacaaaattcattttgtagctttgaagcttgagtgcagttttctttgacacccaattgccagaccaagcatgaatTCttgttgtaccatgtagctccttccgtttggttgtaccttcaagaaggtaatagagaacattaccatgacatctatttctttgtaagaagtataatggagttcagtcctacAaataagcttgactacatacgctggttacaaagaaccagccagcatatggcatcttaacttggagtaaattgcatggcgaatccttaaacttgtacacaggactaatctaggtacATatatgtagaaaatgcaaatctaggtccaaaagtgcgtaaagtagattattaactatacaatccagaagaaatggcattttatgtgtggccgtccctctcttctcccttagatatctcccctaaattgttgtactattttgcggtggatgtcacaagtaacaacacaattcatggagatggaaacttaatgaggtgatgatgaagcatgcaggtgatgttcactcatgctcccagagatgcagctgaccttaggtgcagcatctagttgacaaaaacagcatttgtgatgttgcactcatggcacagTttttttttggggggttggaggttgtggggaggggccggggggcacaaggatgccagatccacctcagtgtatcatgtccacaaggaatgctagttacccagatggacctaaaatgaccaccttaatgtactttatggactAaaatatgtattttctaagtacaggaacccagatggtgaacaattagttcaagttaagaggaccagtgatacgatttactccttataaaacttggcaatcacatacctataccagtacccttatttttgcttacaatttctggaactggatcttcaacagatagacaaaggtggtcatcaagtgctcctagctcatgcaacttcttacatgcatcaaggcaaacgagctgttttgctttgtgcatgtttcttgcttttgggcccaccagaatttgaagcacagcacttggtggtaatgctaatgtacAcacatatccatcatcatgatgagtgaactcaaatgtaggttttggggagtagcacctgtaacacaagcagAaatggcaagaaagtgaattggaggtctccaaacaaaaacgataacagactgaaaccaggtattgcagatctaTttataggtgcaatctgtgtagtcatgtaaaaagagacaactgaaaatgagatcaacatacttatcctgcggaagcttctcacagtatcggtagacaatactgatgcttgaatcagcagttactttcgctcctgttgtgcctacatggtattcgTttatttcttcattgggaacaaaaccaggcgacagatttccagattctctgcttgaagcaatcttaaccattgaagtctcacttctcacaattgcagatatcaaatcattttgcttcacgttCcccctgcattagaagaaaTGaattatgtatccttgcatccttcttgtttgccattcctctctgcattcagttaaaagcacgtgaatAaaaggtgtaaatggggtagcattaaggttataccgttcaatcatgagaatgtactgagagtcttcctggcgtgctcgtccacgtgactgcacatagctacgtgttgtccttggcaaatcaaatcgtattacacaagagcattctgggACatggataccctcttcagcaacatctgtagtaaatagtaagttaacctgcattttagaaagggaaaacaaggttatatcatgagaactatgcttcagtttctccaagtgttgacataTCttaattacctttccagagcgaaatgaatccaatgtatccttctgcattttgggtgtcagagcatccaccgaagatctCcctccagtaagAaaagaaactgtgaaatgtgcaaggtggccaattttcttaatcatccggtcaatgactctagcagtgatctttcgatcaacaaaaatgaggcatcgagcatgacgagagttactgttaggaatagaaatgtgtCAcgtcagtgtaaaggcacacaattgAaaaaaataaacaagtggaccttCcccaagaaataatacctaaaagagtgaaagatctggatgagttcatagagctttggggaaatatagcccgtctttgctgcttcAacacatccactttctgagtttagaagcatgtcgatacctggaagatagcaaatagtttagagaatacacagaaggactgagcattttcatattgagaagagagccaaaAGactgaagtaccatcttcatgctACacacagacatcaaatgaaaggataggaattcatcaaggagatggtacatgatacttcctatcaaacagattcatcatactccataagttcatatagggtgttgcagtgcTAtatatgcttagatccattggctaatggcatggcataacagtgtaaggttgcaaataagtttacagacattaccagtccattattagttttacctacatagtcataccTTGttggaggcgtttgtcaattaaatgcaaggcttcctcaaagaacttcatatgaagcgctgaattttctgcaaataggcgtgatccatttgcatcagtttgctgatctgtggcatcaactacttccttcagccaacctttctcctggcccctttcaatgcagatttttgtggcctaagagaatgaatgataagttattatttacccatattaagacatgaactctgaagcaaagtggcggtaaaagaactcttcaaacatagaaagctaacgttgcagtatGAgagagaaaaaggaattactAagagatggGAattttttggttaagaagaaagtaacccaaaattaggctgaaaaggatttaaataggttgtgaggcgtgcaaacgtgcttcgcaccaagttaagctcagttcctgtaacataagtagctagaacaaatgaATataacAaatacctcacttgcacaaataagaccaacatcatcaaggcagtagcaaatttttgctatagatttagaaaggcgtctctttgattcttttgttatatcatcagcatcTttatacatgtcgcttcgcttattctgcaactctgttatcaatgcatcatactgcacatacataaaagagtgtgttcttagaaacattaaaaatgctgagctgcaaactttgatgacaaatttgatcaatatagaagagaaaaaagagATataaaaccttggaacataaaactcccaattcttcactcaaatcttcAaaacaaactggtttcgagtcatagtacctgcacatttcTtttgcagaaggaacacaaaactctaTCtcttctctatctgaaactgtgtagatctgttacagataaaaattgatgagaatcaaagtacgcagataaccgtatcacatttttAaaaggggtcataggtgtatcccAaaatggcatgggtaaaacagataaATatatatcacctaagctctcAaaacgaacacaacagtaaaacaatttgcatttggttgaaaaccacaatcagtaaataattggaattcaggtatgTAtatatccttgcacttcaatagacaaagtagaaTAGtgtagttatcagaactaacatgtcctgtataatctaacccagcttattcAaataatatgtgtggcaaagcaggaaactgaacataccttagcatctaacaggTtctccaattcacagaactgaccttcacaatccaaatgagaAGagatacctgcaaagAaaaccatgaaaactcAaatcatctaaTaagactaagtgatgcgaataaatcaaatctgccagaaaTATtggcatttatgaactctatggccaaagtgaaattggagattatgcgcacgatcATTattcctggatatttctcttagatggcaggtcagAATtAacacatgtcctaaatgccactgtttacaagaaatttattgctgatcttttctgacttataagtctcttaacatcccattcctccccccAcccacacccacACAAAAGAAaagaaGaagAagcattctatagctcttgcaGATaactgAAtacttgccttttcttataACagGtgatgctgtcataccaaacacacttggcttatgagaactggatagtgatgagttataacatatgacaaacacAaaaaagaaaaacctaaatgctaatgtcaaaaaaaaaaaacatgataagatggtaTttcacaatAccttcattattcttgtatAagggtggtttccagttgcatgatggcattcatcaaatatcAtgagactaaccatgtccaagattaagaaagcattgcgtaaagcttgtaGgaacaCctgtggtgtcatgaccatGacctgcaattttattattataaatgttgaaagcatcaacaagtagatagaacaggggaaaaacatctatgggatattcttaacaaaagatgttgagtaaatttcacaaaactatggatacttcgatcaaactgtcacaaaactacagagtttaggtgttatatcacaaaactacagatttagcatggaatttctcatagaactacagatttaagatagagtatcacaaagataaagattaagtagcaaatttaccacaaaactacaggtttagtgccaattttaagcacaaaactacaatgtttatagctctaacgtaacggtagtgctatagatttatactctagaatatgttgttttgtgataactttagtattaaatctgtagttctctaatacttggccttaaatctgtagttttgcgataatttggttaaaaatctgtagtttcgtgaaatttactctataatatagtgaacagaagactgcagatcataagtgctgctagcatggaatgagtattttctttagcacatatgatgaatcagtgagcccttaaaacaacaacaaataaatgcttgcctggtattttgagatttgctcttgccatctaggacctgtccattgatcaaccccctttgcaccatagtattgttctacctcaaaatctgtgtggatttcaatcacctcgcattgctgtggcaaaaaataatgttagtataaattacgttacagttaggataaaacgaacagtctacagactggtataacctgtgcaacaagttgaactgttggtgcaagaaatatgatgacttttccagcattctttgttctgtttatctttccgaactccttgataagcatcacagcaatcattgtcttcccggctcctgtgtcaagcatcgcaatcgtgtttctccgcattgcaacctcatagacatcaagctgatatctgaccaatttcagcatcacaaagcaatgtcacaggattgcactctttttctgattatataatatagtaactgtgaaaaggagaactccgcagaaccttctgggagtgaaatcttgacactctctcttctgcagtttctgtttgcctgCTTcatgttcctgagaagatggttccaatgacctctttaaagggttcatgtttactgccattccaacagagaaatttaccaagtgaggtcatgacaattcaccactgagaatattcacacccaaatagaacggaattagtaatcctcgaagcagtggcggatctaacatgggacatgggggttcagttaaaCccccaaactttttgggaaccattgaactgttattagtactattttctaaggttaagtcagtttctagaacagaagctaggattaacgcaaatccgagaaaaagtgcgtgggtagaaagaggatgtgcgtaacggaagcggcggaagcagcagtacgaacgacggcgacccagctcgctcgcgcgcgcgatggatggggatcgacgcaggcggcggtggcggaggaggtgctcaccaggatgcggcggatgcagcaggacgaacgacggcgccctgctcgctcgcgggatggatggggatcggcggcggcggcggcggcgccgcggcgggcaaactgacgagtaggggtcagggtaactcacggacgACaaaggccactacgtcaaaatggcgagggt
More
|
||||||||||
| CDS seq | atggcagtaaacatgaaccctttaaagaggtcattggaaccatcttctcaggaacatgAAGcaggcaaacagaaactgcagaagagagagtgtcaagatttcactcccagaagatatcagcttgatgtctatgaggttgcaatgcggagaaacacgattgcgatgcttgacacaggagccgggaagacaatgattgctgtgatgcttatcaaggagttcggaaagataaacagaacaaagaatgctggaaaagtcatcatatttcttgcaccaacagttcaacttgttgcacagcaatgcgaggtgattgaaatccacacagattttgaggtagaacaatactatggtgcaaagggggttgatcaatggacaggtCatggtcatgacaccacaggtatctCTtctcatttggattgtgaaggtcagttctgtgaattggagaAcctgttagatgctaagatctacacagtttcagatagagaagaGAtagagttttgtgttccttctgcaaaAgaaatgtgcaggtactatgactcgaaaccagtttgtttTgaagatttgagtgaagaattgggagttttatgttccaagtatgatgcattgataacagagttgcagaataagcgaagcgacatgtataaAgatgctgatgatataacaaaagaatcaaagagacgcctttctaaatctatagcaaaaatttgctactgccttgatgatgttggtcttatttgtgcaagtgaggccacaaaaatctgcattgaaaggggccaggagaaaggttggctgaaggaagtagttgatgccacagatcagcaaactgatgcaaatggatcacgcctatttgcagaaaattcagcgcttcatatgaagttctttgaggaagccttgcatttaattgacaaacgcctccaaCAAggtatcgacatgcttctaaactcagaaagtggatgtgtTgaagcagcaaagacgggctatatttccccaaagctctatgaactcatccagatctttcactcttttagtaactctcgtcatgctcgatgcctcatttttgttgatcgaaagatcactgctagagtcattgaccggatgattaagaaaattggccaccttgcacatttcacagtttctttTcttactggaggGagatcttcggtggatgctctgacacccaaaatgcagaaggatacattggattcatttcgctctggaaaggttaacttactatttactacagatgttgctgaagagggtatccatGTcccagaatgctcttgtgtaatacgatttgatttgccaaggacaacacgtagctatgtgcagtcacgtggacgagcacgccaggaagactctcagtacattctcatgattgaacggggGaacgtgaagcaaaatgatttgatatctgcaattgtgagaagtgagacttcaatggttaagattgcttcaagcagagaatctggaaatctgtcgcctggttttgttcccaatgaagaaataaAcgaataccatgtaggcacaacaggagcgaaagtaactgctgattcaagcatcagtattgtctaccgatactgtgagaagcttccgcaggataagtgctactccccaaaacctacatttgagttcactcatcatgatgatggatatgtgTgtacattagcattaccaccaagtgctgtgcttcaaattctggtgggcccaaaagcaagaaacatgcacaaagcaaaacagctcgtttgccttgatgcatgtaagaagttgcatgagctaggagcacttgatgaccacctttgtctatctgttgaagatccagttccagaaattgtaagcaaaaataagggtactggtataggtacaaccaaacggaaggagctacatggtacaacaaGAattcatgcttggtctggcaattgggtgtcaaagaaaactgcactcaagcttcaaagctacaaaatgaattttgtttgtgaccaagctggtcagatttactctgaatttgttctgttaattgatgcaactttaccggatgaagtcgctactttggagattgacctatatttgcacgacaagatggtcaaaacttcagtttcttcttgtggacttcttgagttggatgctcaacagatggaacaagcaaagttgtttcaagggcttctcttcaatggtttgtttggaaagctgtttactagatcaaaagtacctaatgctccgagggaattcattcttaataaagaggatacatttgtgTGgaacactgcgagtgtatatttgcttttaccaacaaatccttcttttgactccaacgtttgtattaattggagtgtcattgatgcggcagctacggcagttaaacttatgagaaggatttattctgagaataaaagagaattacttggaatatttgattctgaccaaaatgttggagatttaattcatttagctaacaagtcgtgtaaggctaacagcctcaaagatatggtagttctagcagttcacactgggaagatatatactgctcttgatatTactgaattatctggcgatagcgcttttgatggtgcatctgataagaaaGAAtgtaaattccggacattcgcagaatatttcaaaaAgaagtatggcatagtacttcgccacccctcacagccactactagttttgaagcctagtcataatcctcacaaccttctttcctcgaagttcagggatgaaggtaatgttgtggagaatatgagtaatggcacaccagttgtaaataaaAcaagcaaccgtgtccacatgcctcctgagttgctgattccccttgatttacctgtggaaattttgagatcattctatttgtttccggctttgatgtATcggattgagtcattaacgttagctagtcaactaagaagtgaaattggatacagcgattctaatatatcaagtttcctgattctggaagctattacaacgcttaggtgctctgaggatttctctatggagcgtctagaattattgggagactctgtattgaagtatgcagtgagttgtcatcttttcctgaaatttcctaataaggatgaggggcagctatcatccataaggtgccatatgatttgtaatgccacactttataagcttggaattgaacgcaatgtacagggttacgtacgtgatgctgcatttgatcctcgtcgatggctagcaccaggacagctctctattcgtccatctccttgtgaatgccctgtaaaatctgaggttgtaactgacgatattcatatcattgatgacaaggctattGTTctaggcaaggcgtgtgacaagggacacagatggatgtgttccaaaaccattgctgattgttttgaggctattattggggcatattatgcagggggtggtttaagagcagccatggcagttctcaaatggttgggcatcggggctgaaattgaagaagacttgattgtgcaggccatattgagtgcttctgtgcagacttatcttccaaaagacaatgtatttgaaatgcttgaagcaaaactaggctattctttctcggtgaaaggtcttttggtagaggctctgactcacccatcacagcaggagttaggtgcaaaatactgctacgagcgcctagagttcctcggtgatgcagtcttagacattctgttaacaagatatcttttcaatagtcataaagacactaatgagggggagttgacagacttacgttctgcatcagtcaataatgaaaactttgcacaagttgcagtaaagcacaacttccatcactttctccagcattcttctgggcttctgttagaccaaattactgaatatgtgaataggttggaaggttcatccatggacaaagttgaactgttatcagatggactcccaaaagggcctaaagtccttggtgatattgtagaaagtattgcaggtgcaattcttttagacaccaaacttgatttggatgtagtctggggtatttttgaaccccttctttccccaattgtcacacctgagaatctggagttacctccatacagagagcttatcgaatggtgtggcaaacatgggtattttgtaggaattaactgtagagatcaaggagacacagtagtggctactcttgatgtacagctcaaagaggtgcttcttgtgaggcaaggttttagcaagaaaAgaaaagatgcgaaagcgcatgcatcttccttactgctcaaagatctcgaggaaaaaggactaataatcccaaagaatgcaagcaagacagaacaattTgaaaagcattgtggcaGCActaatcccttcaacaatttgcatgtcgatgcaatggatacacagactccaaaAccaagcaaggaaaaaaacgcagctgattcaaggaacatttctgatcccctgcttggtaaaccattgcacgtgattgtgaaaacgagtaaaggaggaccacgcattgcattatatgagttgtgtaaaaagttgcaatggccaatgcctacaatggaatctgagaaagtacaaccaagctttagcagcgtgtgctcctcccctggtggttcctcccagaaagctaccccccaagcgttcgctttcgcttcaaccattacattgcatataccaaatgctgatgtgatcagcctcacaggagatggccgtgcagataagaAgagctcacaggattctgctgccctgttcttgctctatgagcttcagcggcgaggtactttgcaactccaggaggtgtga
More
|
||||||||||
| Protein seq | MAVNMNPLKRSLEPSSQEHEAGKQKLQKRECQDFTPRRYQLDVYEVAMRRNTIAMLDTGAGKTMIAVMLIKEFGKINRTKNAGKVIIFLAPTVQLVAQQCEVIEIHTDFEVEQYYGAKGVDQWTGHGHDTTGISSHLDCEGQFCELENLLDAKIYTVSDREEIEFCVPSAKEMCRYYDSKPVCFEDLSEELGVLCSKYDALITELQNKRSDMYKDADDITKESKRRLSKSIAKICYCLDDVGLICASEATKICIERGQEKGWLKEVVDATDQQTDANGSRLFAENSALHMKFFEEALHLIDKRLQQGIDMLLNSESGCVEAAKTGYISPKLYELIQIFHSFSNSRHARCLIFVDRKITARVIDRMIKKIGHLAHFTVSFLTGGRSSVDALTPKMQKDTLDSFRSGKVNLLFTTDVAEEGIHVPECSCVIRFDLPRTTRSYVQSRGRARQEDSQYILMIERGNVKQNDLISAIVRSETSMVKIASSRESGNLSPGFVPNEEINEYHVGTTGAKVTADSSISIVYRYCEKLPQDKCYSPKPTFEFTHHDDGYVCTLALPPSAVLQILVGPKARNMHKAKQLVCLDACKKLHELGALDDHLCLSVEDPVPEIVSKNKGTGIGTTKRKELHGTTRIHAWSGNWVSKKTALKLQSYKMNFVCDQAGQIYSEFVLLIDATLPDEVATLEIDLYLHDKMVKTSVSSCGLLELDAQQMEQAKLFQGLLFNGLFGKLFTRSKVPNAPREFILNKEDTFVWNTASVYLLLPTNPSFDSNVCINWSVIDAAATAVKLMRRIYSENKRELLGIFDSDQNVGDLIHLANKSCKANSLKDMVVLAVHTGKIYTALDITELSGDSAFDGASDKKECKFRTFAEYFKKKYGIVLRHPSQPLLVLKPSHNPHNLLSSKFRDEGNVVENMSNGTPVVNKTSNRVHMPPELLIPLDLPVEILRSFYLFPALMYRIESLTLASQLRSEIGYSDSNISSFLILEAITTLRCSEDFSMERLELLGDSVLKYAVSCHLFLKFPNKDEGQLSSIRCHMICNATLYKLGIERNVQGYVRDAAFDPRRWLAPGQLSIRPSPCECPVKSEVVTDDIHIIDDKAIVLGKACDKGHRWMCSKTIADCFEAIIGAYYAGGGLRAAMAVLKWLGIGAEIEEDLIVQAILSASVQTYLPKDNVFEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHKDTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVELLSDGLPKGPKVLGDIVESIAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYRELIEWCGKHGYFVGINCRDQGDTVVATLDVQLKEVLLVRQGFSKKRKDAKAHASSLLLKDLEEKGLIIPKNASKTEQFEKHCGSTNPFNNLHVDAMDTQTPKPSKEKNAADSRNISDPLLGKPLHVIVKTSKGGPRIALYELCKKLQWPMPTMESEKVQPSFSSVCSSPGGSSQKATPQAFAFASTITLHIPNADVISLTGDGRADKKSSQDSAALFLLYELQRRGTLQLQEV |
||||||||||
| Function | Endoribonuclease Dicer homolog 3a [UniProtKB/Swiss-Prot:Q5N870] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0043350 | OsNaBo_01g0043350.01 | Chr01 | 40020498 | 40030513 | - | NAM | ||
| CDS seq | atggcagtaaacatgaaccctttaaagaggtcattggaaccatcttctcaggaacatgAAGcaggcaaacagaaactgcagaagagagagtgtcaagatttcactcccagaagatatcagcttgatgtctatgaggttgcaatgcggagaaacacgattgcgatgcttgacacaggagccgggaagacaatgattgctgtgatgcttatcaaggagttcggaaagataaacagaacaaagaatgctggaaaagtcatcatatttcttgcaccaacagttcaacttgttgcacagcaatgcgaggtgattgaaatccacacagattttgaggtagaacaatactatggtgcaaagggggttgatcaatggacaggtCatggtcatgacaccacaggtatctCTtctcatttggattgtgaaggtcagttctgtgaattggagaAcctgttagatgctaagatctacacagtttcagatagagaagaGAtagagttttgtgttccttctgcaaaAgaaatgtgcaggtactatgactcgaaaccagtttgtttTgaagatttgagtgaagaattgggagttttatgttccaagtatgatgcattgataacagagttgcagaataagcgaagcgacatgtataaAgatgctgatgatataacaaaagaatcaaagagacgcctttctaaatctatagcaaaaatttgctactgccttgatgatgttggtcttatttgtgcaagtgaggccacaaaaatctgcattgaaaggggccaggagaaaggttggctgaaggaagtagttgatgccacagatcagcaaactgatgcaaatggatcacgcctatttgcagaaaattcagcgcttcatatgaagttctttgaggaagccttgcatttaattgacaaacgcctccaaCAAggtatcgacatgcttctaaactcagaaagtggatgtgtTgaagcagcaaagacgggctatatttccccaaagctctatgaactcatccagatctttcactcttttagtaactctcgtcatgctcgatgcctcatttttgttgatcgaaagatcactgctagagtcattgaccggatgattaagaaaattggccaccttgcacatttcacagtttctttTcttactggaggGagatcttcggtggatgctctgacacccaaaatgcagaaggatacattggattcatttcgctctggaaaggttaacttactatttactacagatgttgctgaagagggtatccatGTcccagaatgctcttgtgtaatacgatttgatttgccaaggacaacacgtagctatgtgcagtcacgtggacgagcacgccaggaagactctcagtacattctcatgattgaacggggGaacgtgaagcaaaatgatttgatatctgcaattgtgagaagtgagacttcaatggttaagattgcttcaagcagagaatctggaaatctgtcgcctggttttgttcccaatgaagaaataaAcgaataccatgtaggcacaacaggagcgaaagtaactgctgattcaagcatcagtattgtctaccgatactgtgagaagcttccgcaggataagtgctactccccaaaacctacatttgagttcactcatcatgatgatggatatgtgTgtacattagcattaccaccaagtgctgtgcttcaaattctggtgggcccaaaagcaagaaacatgcacaaagcaaaacagctcgtttgccttgatgcatgtaagaagttgcatgagctaggagcacttgatgaccacctttgtctatctgttgaagatccagttccagaaattgtaagcaaaaataagggtactggtataggtacaaccaaacggaaggagctacatggtacaacaaGAattcatgcttggtctggcaattgggtgtcaaagaaaactgcactcaagcttcaaagctacaaaatgaattttgtttgtgaccaagctggtcagatttactctgaatttgttctgttaattgatgcaactttaccggatgaagtcgctactttggagattgacctatatttgcacgacaagatggtcaaaacttcagtttcttcttgtggacttcttgagttggatgctcaacagatggaacaagcaaagttgtttcaagggcttctcttcaatggtttgtttggaaagctgtttactagatcaaaagtacctaatgctccgagggaattcattcttaataaagaggatacatttgtgTGgaacactgcgagtgtatatttgcttttaccaacaaatccttcttttgactccaacgtttgtattaattggagtgtcattgatgcggcagctacggcagttaaacttatgagaaggatttattctgagaataaaagagaattacttggaatatttgattctgaccaaaatgttggagatttaattcatttagctaacaagtcgtgtaaggctaacagcctcaaagatatggtagttctagcagttcacactgggaagatatatactgctcttgatatTactgaattatctggcgatagcgcttttgatggtgcatctgataagaaaGAAtgtaaattccggacattcgcagaatatttcaaaaAgaagtatggcatagtacttcgccacccctcacagccactactagttttgaagcctagtcataatcctcacaaccttctttcctcgaagttcagggatgaaggtaatgttgtggagaatatgagtaatggcacaccagttgtaaataaaAcaagcaaccgtgtccacatgcctcctgagttgctgattccccttgatttacctgtggaaattttgagatcattctatttgtttccggctttgatgtATcggattgagtcattaacgttagctagtcaactaagaagtgaaattggatacagcgattctaatatatcaagtttcctgattctggaagctattacaacgcttaggtgctctgaggatttctctatggagcgtctagaattattgggagactctgtattgaagtatgcagtgagttgtcatcttttcctgaaatttcctaataaggatgaggggcagctatcatccataaggtgccatatgatttgtaatgccacactttataagcttggaattgaacgcaatgtacagggttacgtacgtgatgctgcatttgatcctcgtcgatggctagcaccaggacagctctctattcgtccatctccttgtgaatgccctgtaaaatctgaggttgtaactgacgatattcatatcattgatgacaaggctattGTTctaggcaaggcgtgtgacaagggacacagatggatgtgttccaaaaccattgctgattgttttgaggctattattggggcatattatgcagggggtggtttaagagcagccatggcagttctcaaatggttgggcatcggggctgaaattgaagaagacttgattgtgcaggccatattgagtgcttctgtgcagacttatcttccaaaagacaatgtatttgaaatgcttgaagcaaaactaggctattctttctcggtgaaaggtcttttggtagaggctctgactcacccatcacagcaggagttaggtgcaaaatactgctacgagcgcctagagttcctcggtgatgcagtcttagacattctgttaacaagatatcttttcaatagtcataaagacactaatgagggggagttgacagacttacgttctgcatcagtcaataatgaaaactttgcacaagttgcagtaaagcacaacttccatcactttctccagcattcttctgggcttctgttagaccaaattactgaatatgtgaataggttggaaggttcatccatggacaaagttgaactgttatcagatggactcccaaaagggcctaaagtccttggtgatattgtagaaagtattgcaggtgcaattcttttagacaccaaacttgatttggatgtagtctggggtatttttgaaccccttctttccccaattgtcacacctgagaatctggagttacctccatacagagagcttatcgaatggtgtggcaaacatgggtattttgtaggaattaactgtagagatcaaggagacacagtagtggctactcttgatgtacagctcaaagaggtgcttcttgtgaggcaaggttttagcaagaaaAgaaaagatgcgaaagcgcatgcatcttccttactgctcaaagatctcgaggaaaaaggactaataatcccaaagaatgcaagcaagacagaacaattTgaaaagcattgtggcaGCActaatcccttcaacaatttgcatgtcgatgcaatggatacacagactccaaaAccaagcaaggaaaaaaacgcagctgattcaaggaacatttctgatcccctgcttggtaaaccattgcacgtgattgtgaaaacgagtaaaggaggaccacgcattgcattatatgagttgtgtaaaaagttgcaatggccaatgcctacaatggaatctgagaaagtacaaccaagctttagcagcgtgtgctcctcccctggtggttcctcccagaaagctaccccccaagcgttcgctttcgcttcaaccattacattgcatataccaaatgctgatgtgatcagcctcacaggagatggccgtgcagataagaAgagctcacaggattctgctgccctgttcttgctctatgagcttcagcggcgaggtactttgcaactccaggaggtgtga
More
|
|||||||
| Protein seq | MAVNMNPLKRSLEPSSQEHEAGKQKLQKRECQDFTPRRYQLDVYEVAMRRNTIAMLDTGAGKTMIAVMLIKEFGKINRTKNAGKVIIFLAPTVQLVAQQCEVIEIHTDFEVEQYYGAKGVDQWTGHGHDTTGISSHLDCEGQFCELENLLDAKIYTVSDREEIEFCVPSAKEMCRYYDSKPVCFEDLSEELGVLCSKYDALITELQNKRSDMYKDADDITKESKRRLSKSIAKICYCLDDVGLICASEATKICIERGQEKGWLKEVVDATDQQTDANGSRLFAENSALHMKFFEEALHLIDKRLQQGIDMLLNSESGCVEAAKTGYISPKLYELIQIFHSFSNSRHARCLIFVDRKITARVIDRMIKKIGHLAHFTVSFLTGGRSSVDALTPKMQKDTLDSFRSGKVNLLFTTDVAEEGIHVPECSCVIRFDLPRTTRSYVQSRGRARQEDSQYILMIERGNVKQNDLISAIVRSETSMVKIASSRESGNLSPGFVPNEEINEYHVGTTGAKVTADSSISIVYRYCEKLPQDKCYSPKPTFEFTHHDDGYVCTLALPPSAVLQILVGPKARNMHKAKQLVCLDACKKLHELGALDDHLCLSVEDPVPEIVSKNKGTGIGTTKRKELHGTTRIHAWSGNWVSKKTALKLQSYKMNFVCDQAGQIYSEFVLLIDATLPDEVATLEIDLYLHDKMVKTSVSSCGLLELDAQQMEQAKLFQGLLFNGLFGKLFTRSKVPNAPREFILNKEDTFVWNTASVYLLLPTNPSFDSNVCINWSVIDAAATAVKLMRRIYSENKRELLGIFDSDQNVGDLIHLANKSCKANSLKDMVVLAVHTGKIYTALDITELSGDSAFDGASDKKECKFRTFAEYFKKKYGIVLRHPSQPLLVLKPSHNPHNLLSSKFRDEGNVVENMSNGTPVVNKTSNRVHMPPELLIPLDLPVEILRSFYLFPALMYRIESLTLASQLRSEIGYSDSNISSFLILEAITTLRCSEDFSMERLELLGDSVLKYAVSCHLFLKFPNKDEGQLSSIRCHMICNATLYKLGIERNVQGYVRDAAFDPRRWLAPGQLSIRPSPCECPVKSEVVTDDIHIIDDKAIVLGKACDKGHRWMCSKTIADCFEAIIGAYYAGGGLRAAMAVLKWLGIGAEIEEDLIVQAILSASVQTYLPKDNVFEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHKDTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVELLSDGLPKGPKVLGDIVESIAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYRELIEWCGKHGYFVGINCRDQGDTVVATLDVQLKEVLLVRQGFSKKRKDAKAHASSLLLKDLEEKGLIIPKNASKTEQFEKHCGSTNPFNNLHVDAMDTQTPKPSKEKNAADSRNISDPLLGKPLHVIVKTSKGGPRIALYELCKKLQWPMPTMESEKVQPSFSSVCSSPGGSSQKATPQAFAFASTITLHIPNADVISLTGDGRADKKSSQDSAALFLLYELQRRGTLQLQEV
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0043350 | OsNaBo_01g0043350.02 | Chr01 | 40020499 | 40031041 | - | IsoSeq | ||
| CDS seq | atgcaactttaccggatgaagtcgctactttggagattgacctatatttgcacgacaagatggtcaaaacttcagtttcttcttgtggacttcttgagttggatgctcaacagatggaacaagcaaagttgtttcaagggcttctcttcaatggtttgtttggaaagctgtttactagatcaaaagtacctaatgctccgagggaattcattcttaataaagaggatacatttgtgTGgaacactgcgagtgtatatttgcttttaccaacaaatccttcttttgactccaacgtttgtattaattggagtgtcattgatgcggcagctacggcagttaaac
More
|
|||||||
| Protein seq | MQLYRMKSLLWRLTYICTTRWSKLQFLLVDFLSWMLNRWNKQSCFKGFSSMVCLESCLLDQKYLMLRGNSFLIKRIHLCGTLRVYICFYQQILLLTPTFVLIGVSLMRQLRQLN |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr01 | 40029356 | 40029970 | - | OsNaBo_01g0043350.02 | OsNaBo_01g0043350.01,OsNaBo_01g0043350.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.861974 | 14.682350 | 9.519471 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0909200 | RBH | 1.436198 | 0.943200 | 4.246792 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g68120 | RBH | 0.982457 | 0.529189 | 1.103648 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0909200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0044280 | RBH | 0.311216 | 8.382353 | 7.432393 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0043820 | RBH | 0.133559 | 0.370784 | 2.569463 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0044210 | RBH | 1.232480 | 5.663505 | 10.499375 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0043670 | RBH | 0.239890 | 0.296734 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0043240 | RBH | 6.822357 | 14.244468 | 22.766838 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0652500 | RBH | 7.0969495 | 15.9221975 | 7.183943 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0042890 | RBH | 0.328744 | 0.615454 | 1.805275 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0653600 | SBH | 5.833362 | 11.695232 | 29.2314345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0043220 | RBH | 0.218622 | 0.310699 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0043180 | RBH | 0.600887 | 8.043244 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0043460 | RBH | 6.743310 | 9.546598 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0043420 | RBH | 0.898687 | 0.900747 | 1.952004 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0043230 | RBH | 0.227242 | 3.000084 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G043620 | RBH | 0.334284 | 3.924193 | 3.986923 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
