Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0042480 | OGI:01115380 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:39346948-39351203 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tgaaacttatgcattcgtgtatgttgattgcactgtggcattattcttagaattacacagatgaatacagtgaagacaaactctttggcaggaagctgcttgcagttgctagcttgatatgcagtaaaatgttcagtgttcaaaaagtggcagaacatcaccccgtgcacattatattcgcaagtcgcaacgttacaacgtcaacatttcaccaattcacaactaaaaacgtgttgctggtaagtagaatcgtatgccctgctgtccaaaaggaatgatcttcaggcttttgttcatttcattccaatccggatattcaaattttcagcacacgcagcaaggaacacttgcggctattctggcctcccagatcatttattggtaacaattataagcaatgaccatgcaaattccagcttctcctaggaagaatgcacttttccgtgatttcaaagctcatcctgcaaatggagcattactatgtaagtcacccgctattatctaattcAatatcgatggaatgaaggttttttgcaacttacatggtagtcatcatcccagtgatccctatgacgctgaaacatagagaagagcaaagggatgttagtaacctagtaaatcatagcattcacttgtttctacctctatctttgctttcctaaactcttgtttgatcctttaatgcaataagcaaggctcatgcccttttcgctAaaaaaatcattatccactctgcatatttgatatttcttgcactacatcatgaacttacggcactacacaagtcacaacacacttcaccacagcctcccaaaaataccttacatctaatcagatattagatccggaaaaaaaaatcagatattagagagaatttgtttgcttatgtaggaacgtgtgaaggacaatagtatagaagAaactaagggaccacatgataatcttgcatcagtaggcgtttttttaggggaatcaaaggttatgactcagtgaccggtactcagtactaagtacttctaatagctcaatggtGgcttcactagttcatgaagaaagcaagatgcaagtttgttatatagcagtagaagaaATatactcTtttgtatctgtccttgtaatccctgccacggtgccgatcaCccctctctctcctccgtcgctctccttcctcccttgctcgttcagcttcctgtacaaaagtagttacagttagcttctctaattccagtcatgctcccacatcaagtgctcaaaactaagattttgaccttatcctctctagctttcctctccttctcagcttcttcaaaagcctctttttcggcctgcaatgtagacaaaactaagattgtgcctagcagatatgaatagcagacaacaattctgtaaatatttatgtgatgttacctccctgtttgcaccccatgtttcctcagcagcttttcttgcatattccggatcgtcacaaatgaggatgttgtcaaaaaccgaaccagcctttacctgcatatgaataaagcGTgagtctatgtcgcatatacatcattcagaccaaactaggatttgatgaagcaagcagaccactataaatgttacctgccaaacctcaattccaatatatttcaagggtttcagcacatataggtctggatcatcctcaaactctgcaaagttggaattacacacagcttaagtggtgttcaaacaagaggcccagttcaaaatcaggtgctgagtgtcatatcacactaaatgtagcacataaagttagtagcactatttgcatacctggattatcaatccatgggatcttccatttacccttgtagTtaggattcttgattttctgtacacaaaagaatgtatgaatatgaactcttaaaagatagtgcaccaagaaggattggttgccaaagacaaaaaaaacaaaccttgcgcttccatggtcccttgtatgctggatttggTAtcattctaggcttccatatgcCATcatcatcatcatcccacgtgtcaggctgatttagaacaaaagatgcatattagttatcatgtgcattcagtacttcagttatatagagaacttcactgaaaatgcatactaggaagttatactagaatcagttgcattgctgtcagaatcttatgttgcagttactataaattaaatagatgccatgggctcatggcagtaggtagaggtgtagagctagacatgtggttaaattggccagtctttgggtgcttttaaatggttgatacgttaggttttgattaatctaatagcttattacctttttgtcttttggatcaggaatctcctttggaatagaatcatagccctgaccaaggcaaatgaaatgttacaacacatatgcacagtataacatgtaaggggtggagttttggcaacacaaacctctggtttaactgcatctggatcctcaataTattctctgtcatCccaatccttaggctgcaaaagaaggcatatatgttagttatgacatcgtaatttctagtcttcatacagctccagttattgaaataaaaagttacctttttggcatgaacatccttaatcttacgaggagggaggatgtcccagtcagtgtacatgctccctgattctctttcacggttatcaactagtatgctataggacgcatcaggcctTAGtatgaatgtgtaaacatgcgtcaacttgtctgtttcacattgcagatctttcttgatagggtagttctgcccttgataagaaagtataagatggagcttcttcgtttgagttccgcatatatctggcccaaacattaagctgcataaaggggagaaaataaagttagcaggcatcgtttagcagcagactagaaaaaggagagcaaataaaccctgtatacatggattagtcctttgataatccagtcacagaccatgatctggaattatatAatatagcttgcgacactaccacacgaacaatagatatttgtaggaattggaaatcctgtaagtaagaacatacctgtatggagtgtctccactaaatttcttctggttgacataaccagacataagTttaatatatccaccaccacattcaatatcctgctcaaactttatggaatactggagtaccaatgtacggcccttgttactgaattcggggatcttggccgatatagcaaaatgcctggcgtccaacgttgtctgtatacctgaatgccacaaagaacacaaggatcaaacactgtatggaagaaagataagcatacagaataaatgttttcacaataaagccatcaatgtcatcaattgaaatagaacgacaatgacagtaaaaagcggacctttgtcatcaggatctccagaatatcttcctgccgtgtgtttgaacgttccagctttcccttcgctccttttccaatcagacttcacccagcgggactcccaaccatctgaatatttgaaacatgcaatcacgtgagtcatgacatacactcagacaaccAaaacaaggaggaaaataagcagcatggcacctattcattggaagttcataaattggacaaagcatcacaccttactcattcaaaccaactcatgccaactattttccgttcaataacacactcaggctcttcacggtcacaaaattagataaacAacagttaacaatgacaccatacaatgctcAatactccactaatttcactagcggacctgaactacatcaacctgtgattagccccttgaagagaagctctcattttttgaacgaacaacccaacctccatccccatccatacttaagtattaacaggtgaagctgaaattgacagtaaccataaagtccttggatacaatactcgcacaagcccagggggcgacatggaaaagcagccgcgcccaaaatggaaaccgggagcagcgaatccagcatggtgagccttgccaattcgaatcaagcaccagcacagaagtagcagcagcTAtaactataagctcaagctagggagcatgcgaagcgagctcccccaaaactggtaagcAattaggactaaattgggaaacgccggattattaccttcgaagcgctcctcgaagatgacctccccggcggcgatgaggagcagcgacgagagggcgatgaatcggaggaagagtcggtggcggccgtcgctgcgacttcccatcgccggtggctcgccggagaagacgaggctactccggtggctcggtaaagctgcaagcat
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| CDS seq | atgcttgcagctttaccgagccaccggagtagcctcgtcttctccggcgagccaccggcgatgggaagtcgcagcgacggccgccaccgactcttcctccgattcatcgccctctcgtcgctgctcctcatcgccgccggggaggtcatcttcgaggagcgcttcgaagatggttgggagtcccgctgggtgaagtctgattggaaaaggagcgaagggaaagctggaacgttcaaacacacggcaggaagatattctggagatcctgatgacaaaggtatacagacaacgttggacgccaggcattttgctatatcggccaagatccccgaattcagtaacaagggccgtacattggtactccagtattccataaagtttgagcaggatattgaatgtggtggtggatatattaaActtatgtctggttatgtcaaccagaagaaatttagtggagacactccatacagcttaatgtttgggccagatatatgcggaactcaaacgaagaagctccatcttatactttcttatcaagggcagaactaccctatcaagaaagatctgcaatgtgaaacagacaagttgacgcatgtttacacattcataCTAaggcctgatgcgtcctatagcatactagttgataaccgtgaaagagaatcagggagcatgtacactgactgggacatcctccctcctcgtaagattaaggatgttcatgccaaaaagcctaaggattggGatgacagagaatAtattgaggatccagatgcagttaaaccagagggctatgattctattccaaaggagattcctgatccaaaagacaaaaagcctgacacgtgggatgatgatgatgATGgcatatggaagcctagaatgaTAccaaatccagcatacaagggaccatggaagcgcaagaaaatcaagaatcctaActacaagggtaaatggaagatcccatggattgataatccagagtttgaggatgatccagacctatatgtgctgaaacccttgaaatatattggaattgaggtttggcaggtaaaggctggttcggtttttgacaacatcctcatttgtgacgatccggaatatgcaagaaaagctgctgaggaaacatggggtgcaaacagggaggccgaaaaagaggcttttgaagaagctgagaaggagaggaaagctagagaggataaggaagctgaacgagcaagggaggaaggagagcgacggaggagagagagggGtgatcggcaccgtggcagggattacaaggacagatacaaaAgacgtcatagggatcactgggatgatgactaccatgatgagctttga
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| Protein seq | MLAALPSHRSSLVFSGEPPAMGSRSDGRHRLFLRFIALSSLLLIAAGEVIFEERFEDGWESRWVKSDWKRSEGKAGTFKHTAGRYSGDPDDKGIQTTLDARHFAISAKIPEFSNKGRTLVLQYSIKFEQDIECGGGYIKLMSGYVNQKKFSGDTPYSLMFGPDICGTQTKKLHLILSYQGQNYPIKKDLQCETDKLTHVYTFILRPDASYSILVDNRERESGSMYTDWDILPPRKIKDVHAKKPKDWDDREYIEDPDAVKPEGYDSIPKEIPDPKDKKPDTWDDDDDGIWKPRMIPNPAYKGPWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVFDNILICDDPEYARKAAEETWGANREAEKEAFEEAEKERKAREDKEAERAREEGERRRRERGDRHRGRDYKDRYKRRHRDHWDDDYHDEL |
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| Function | Calreticulin-3 [UniProtKB/Swiss-Prot:O04153] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0042480 | OsNaBo_01g0042480.01 | Chr01 | 39346948 | 39351203 | - | NAM | ||
| CDS seq | atgcttgcagctttaccgagccaccggagtagcctcgtcttctccggcgagccaccggcgatgggaagtcgcagcgacggccgccaccgactcttcctccgattcatcgccctctcgtcgctgctcctcatcgccgccggggaggtcatcttcgaggagcgcttcgaagatggttgggagtcccgctgggtgaagtctgattggaaaaggagcgaagggaaagctggaacgttcaaacacacggcaggaagatattctggagatcctgatgacaaaggtatacagacaacgttggacgccaggcattttgctatatcggccaagatccccgaattcagtaacaagggccgtacattggtactccagtattccataaagtttgagcaggatattgaatgtggtggtggatatattaaActtatgtctggttatgtcaaccagaagaaatttagtggagacactccatacagcttaatgtttgggccagatatatgcggaactcaaacgaagaagctccatcttatactttcttatcaagggcagaactaccctatcaagaaagatctgcaatgtgaaacagacaagttgacgcatgtttacacattcataCTAaggcctgatgcgtcctatagcatactagttgataaccgtgaaagagaatcagggagcatgtacactgactgggacatcctccctcctcgtaagattaaggatgttcatgccaaaaagcctaaggattggGatgacagagaatAtattgaggatccagatgcagttaaaccagagggctatgattctattccaaaggagattcctgatccaaaagacaaaaagcctgacacgtgggatgatgatgatgATGgcatatggaagcctagaatgaTAccaaatccagcatacaagggaccatggaagcgcaagaaaatcaagaatcctaActacaagggtaaatggaagatcccatggattgataatccagagtttgaggatgatccagacctatatgtgctgaaacccttgaaatatattggaattgaggtttggcaggtaaaggctggttcggtttttgacaacatcctcatttgtgacgatccggaatatgcaagaaaagctgctgaggaaacatggggtgcaaacagggaggccgaaaaagaggcttttgaagaagctgagaaggagaggaaagctagagaggataaggaagctgaacgagcaagggaggaaggagagcgacggaggagagagagggGtgatcggcaccgtggcagggattacaaggacagatacaaaAgacgtcatagggatcactgggatgatgactaccatgatgagctttga
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| Protein seq | MLAALPSHRSSLVFSGEPPAMGSRSDGRHRLFLRFIALSSLLLIAAGEVIFEERFEDGWESRWVKSDWKRSEGKAGTFKHTAGRYSGDPDDKGIQTTLDARHFAISAKIPEFSNKGRTLVLQYSIKFEQDIECGGGYIKLMSGYVNQKKFSGDTPYSLMFGPDICGTQTKKLHLILSYQGQNYPIKKDLQCETDKLTHVYTFILRPDASYSILVDNRERESGSMYTDWDILPPRKIKDVHAKKPKDWDDREYIEDPDAVKPEGYDSIPKEIPDPKDKKPDTWDDDDDGIWKPRMIPNPAYKGPWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVFDNILICDDPEYARKAAEETWGANREAEKEAFEEAEKERKAREDKEAERAREEGERRRRERGDRHRGRDYKDRYKRRHRDHWDDDYHDEL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.307853 | 115.923660 | 23.989269 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0895600 | RBH | 22.413513 | 25.083145 | 28.493332 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g67054 | RBH | 14.091205 | 15.792838 | 6.809675 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0895600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0043410 | RBH | 5.001011 | 188.916977 | 20.728651 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0042990 | RBH | 2.734255 | 45.893414 | 20.393175 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0043330 | RBH | 18.185850 | 189.592911 | 51.904922 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0042780 | RBH | 1.471614 | 3.754538 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0042400 | RBH | 37.268974 | 113.785126 | 64.915565 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0641600 | RBH | 25.264048 | 53.4100055 | 14.506465 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0042020 | RBH | 1.513808 | 9.886458 | 6.444627 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0642300 | RBH | 30.349134 | 49.476629 | 21.3025905 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0042370 | RBH | 2.750541 | 2.083627 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0042310 | RBH | 4.364730 | 100.822861 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0042590 | RBH | 29.153021 | 204.223984 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0042570 | RBH | 7.658557 | 9.788770 | 5.708431 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0042370 | RBH | 3.115054 | 53.928673 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G042770 | RBH | 4.259025 | 39.514545 | 9.079566 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0022600 | RBH | 3.491375 | 61.370468 | 9.757614 |
