Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0042260 | OGI:01114790 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:39153698-39160017 | ||||||||
| Gene Symbol | SDRLK-50 | ||||||||||
| DNA seq | atggtcgtgccttgcatgccactgacgctcacagtgagccggccgctcaccggcgaccagaagttagtctcggagcgcggcaagttcgcgctcggattcttccagcccaaaggtaatttaacatggatcatcgtcagcttcgatccatgcataatatgtatttcgtctttctagcttttacccgtgttcacgttgaTttttttttttttggttgtgttctatgacaaggtcggcatagtacatatgcatcatatctatctatctatctatgtttgTttttgttcatggtatttcgttttgggttggtgtattcttttccttctgaaatgaaataggagtagcaaagttcatgcccttgctttaggctgtgtttatttccaaaatatttcttcaaactttcaactttaccatcacattaaaactttcctacacacataaactttcaacttttctgtcacatcgttccaatttcaaccaaactttcaattttgacgtgaactaaggaaaggaaagttttctggtaatcgttcagaccatcgttcctaggttgtttgattcagtgaaattagttctgcatgatactacttccgcgccccagaaaaagtttaaggtggtgtttggatccagaaactaaactttagtccctgtcatatcaaatgaatttgaggtattaaatatagactaattataaaactaattacataaatgagagctaattcgcgtgacaaaTtttttaagcctaattaatctataattagagcatgtttactgtagcatcacataggctaatcatggattaattagtctcaatagattcatctcgcgaattagtctagggttatagaatagattttattaatagtctacgtttaatatttataattagtgtcaaacatccgatgtgatagggacttaaaagttttagtcctatctaaacagggtcaattttagaaatgaacctagatacatgtgtatatagatgcatccagttgaacTttttttagatgcaactgcaacctgacaagtatgcctaaacagaaaagtattttcaccttttgagaggacatccactggtttcttatctATCagctaaattgttaaaacaaataatatgggggggggggggggctaatgggcaatcgatcgccaggacgatcgcccagcgatcggattcgcccccctccccctataggcaatccgaatacctcctctcgcttctccccttcctccttcccttctcttcctactacagtacaccacaattttttttaaaaaaaataaaagttagaaaaatttatgtatagaaatactatatatAaaaaatttgaattcaaattcaaatttgaatcgagtatgtaaacttttgacttataaactttagatcTAtaaactttaagtgtatagaaatactgtatatagaaaatatttgaattcaaattcaaaattgaatcagatataattcaaattcaaatttgaaacgggtatataaacttttgacttataaactttaggtgtataaactttagatgtatagaaatacTAtatatataaaaaagtttataaactttagtacaagtagaacggtaaatatatggttgtcggtgatatgggcccgaggtacccatgctaGggggaaagagtgaagaagtccgtccccctagccacgtataggtagccgagaggcgccctattcctacctaggggacttggggtgcctcatcgcacccctcgggcccgaggggctgcgttaccccgaggccctcgctcagctgccacgtggcggctgagtgggcggaggaggggacgccgctggcgcattcatgatcggcgtcccaaccaCccccgtcatattaaatgcggcgtggctggtcgtgcgacgccgcccaagtgattgacgtgtgtcaatcacttggacaggtctgtgaccggtggcagatggatgggacgggtaacaccgcacccacgCcccgccctgtgtcaggcggcatgggggcaggtataccctgtctcgtcggccagtagggctcaacacgcaaggccgatgcgttcctggaagcatGAgcccgtagaagtcttcaaagcattaatgagggaatgacaggggatgtcccccgtgtcagttagcagatggctctgggacccacctcggagcaagcagccacaatgcttccggtctaaggcatgggcgggagcggaacccgaggaaaagggacctcctctaggaatgatgagacgaatagaggcggtgcatgtgatattcccttgaactataaaaggaggacgttgttcgccgagcaaaggatggctcttggtagcttgaactctaggggaagcacggttggatttttctaggagctcacggtctcttgtaacagcacaagcataattccacgcacaggagtagggtattatgcttcccagctgcccgaacctatataatccctgatctctcactcgatcgccatccacctcactagcgtaatccaccgcgaagatacgctcttgatcatcgcgccctatcccctggccgaactcataaagaggggtctcacgtcctcccgctagagaggatcactcgttgacaatgatgaaaatcttaacttaaatgaaaacctatataaaccataataaaaatgctgtctaagttcatgAaaaaaaaatttcacgcgtcatacgacacaatcatataaaaaatcttgtcaaaactggattccacttatgagatatacaaataacaaattttgatactcctatatcgttaagacattttatttggTttgataattattatttttatatctcacaaactaagttaagtttggtaaagaTtttttacatagcggtgtaacaccatctaatctactttctttgaatttaaatgacttttttttttcatttttacgctactttttcaccacatacatatttaccgaggaaaacgtatagcgacgcattggcgtttgccaggcggctttgcccatcgctttcttcttcaatcttcatcgccgcgcgccgctgcggcagctatagacctatagtgctactgctatccacggcgtcgagcgcgagccaaacaaatcctcgcctccgaccgttgcgctgcctcgttcctcttatctctcctaagcccaatgtcctactcccatccgtacatgcatgatgcatcccgtcgtcgtccttgccggtttcgcttccggaggggcccgccagccaccgctcatctcatggagcgcgccatcgaggtgaaccccttcccgatcaaaagattttaatttgtggaaagtgggggaTttttcactgggagtgaaggaatttgagtgcaagttcgaatatcaatcgttgagttaaaagctgaatagatttttttttttaaatttgaggtcgaatccatggtgacctagaacagaagatgtggttagttagtccttagagctgtgaatccatgactctttgagaggatctgtactaacttagatgaattcgagggaaagaatgtccttgtctttttttttcttccagccaatccttccctgcctgactggctgtctgcctgtctggttaacctgcttgagaataaggtagaaatagatccaagctgatgatttaaatacaaaaaaaactgttgacaaaacagaatagatctaaattgaaatataatcgctgctactgcgagtgttacatataacttcctctataTtgatttagtagaaaatgaactcatgcttataaatgttatgcacaatatAataagcttgcattttttttcatttagtttcattatgtgaacattcattgtgcgtatttttatgttttcatgttgatatgttatactgattctttttctggtgatctttgttggacagctggaggatctactggcaagtggtacgtgggcatttggtacaacaaaatctcagtgcaaacagttgtatgggtggctaatagggaaaaacctgtatctgatccatcgtcatcaagcctgtccatcttggatgatggaaacattatccttagtcattctaattcgaccgtctggtcaaccaattcaacaaatacaggttccagtcccatggttgctgtgctccttgatacagggaacttagttattagacaggagtccaatgcttcaagtgtgctctggcaaagtttcgatgatatcacagacacatggctcccaggtaacaagctcagtcttaacaaggtgactggagtgccagaaaggatgatctcttggaaaaaccttggtgatccagcaccaggaatgttctctgtagagattgatccagatggctcaaaccagtacattatctcgtggaataagtctgtggtgtattggggtactggtaattggactggcagttcAtttcctaacatgccagagttgtcacctgctaatacctatcccaacaccccttacacttataagtttgttaacaatgacaaggagacatacttcacctacaatgttacagatgatagagtattatcaaggcatgccattggtgtgtcaggtcaaactcagtctttggtatgggtagagtcagcacaagcctgggtactctatttttcacaaccgaaagcaaattgtggcgtgtatggacttttggagttaatagcaagtgtagtgggagtgccttgtcatcatgtagctgcctcaagggcttcagcattcgtgatccaaatagttggaatcttggtgatcaaactgctggttgtaggagaaatgtcatgctgcaatgcggaagcaagagttcagcaggaggacagcaagataggttctatacaataggcagtgtcaagcttcctgacaaatcacagagtattgaggctaccagtattcacagctgcaaattggcttgcctgagtaattgttcctgtactgcctactcttataatggtacttgttcactttggcactcagagcttatgaacttgcaagacagcactgatgggactatggactccatttatattcgattggcagcatcagagctaccaaattcaagaaccaagaaatggtggattattgggattatcgctggtggatttgctactcttggtcttgtggtgatagttttttattctctccatgggagaagacggattagtagtatgaatcacactgatgggtctctgatcactttcaaatacagcgatcttcaaatcctaaccaaaaacttttctgagagactgggtgtggggtctttcggctctgtgttcaaaggggctttaccagatacaactgcaatggcagttaagaagcttgagggtgtccgtcagggagagaagcaattccgggcagaagtgagcactattggaactattcatcacatcaatttgattcaactacttgggttttgttctgaaggggcaaagagattgcttgtctatgaatatatgcccaatggttcattggaccatcatctattcgggagtagcggtgtgtcattaagttggagcacaagatatcaaattgctgctggaatcgccaaaggattagcttacctgcatgagaaatgcagggattgcatcatacattgtgatatcaagCcccagaatatatttctggactcatcatttactccaaaggtggcggactttggaatggcaaagctcttaggccgggattttagtagggttttaacgtcaatgagaggcaccataggttatcttgcaccagagtggataagcggtgaggccatcacaacaaaggcagatgttttcagctacggaatgatgcTtttcgagatcatatctggaaagaggaacggtatgcatggaggctcattctttccagtgttagttgcgagggagcttgtagaaggagagttgcacaagttgtttggttctgaatcaagtgatgacatgaacctaggcgagcttgatagggcatgcaaggTTgcttgttggtgcgttcaagacagtgagagctccaggccgacaatgggggaagtcgttcagatcctagaaggactggtagatgttgaaatgccaccagttccaagatatcttcaggttcttggtcaaggtgtgaaatcatatgaaatttcttctgagatgaatcaagctagtaactaggcctctgcaccaagaaatactccatttctgtgttacctacgatgtttgatctgatgtgctaatttagccatgttaattgtttgatgTtgtatgtgatagtaatctatgtacggcaataaaaaccttccagtgatcagtcggatgtgTttgtttggtaccttcagcagtgaacagacatttgtacatttgagatacgaaaaactgtatcggctctatactactgtacTAtattatcctttttc
More
|
||||||||||
| CDS seq | atggtcgtgccttgcatgccactgacgctcacagtgagccggccgctcaccggcgaccagaagttagtctcggagcgcggcaagttcgcgctcggattcttccagcccaaagctggaggatctactggcaagtggtacgtgggcatttggtacaacaaaatctcagtgcaaacagttgtatgggtggctaatagggaaaaacctgtatctgatccatcgtcatcaagcctgtccatcttggatgatggaaacattatccttagtcattctaattcgaccgtctggtcaaccaattcaacaaatacaggttccagtcccatggttgctgtgctccttgatacagggaacttagttattagacaggagtccaatgcttcaagtgtgctctggcaaagtttcgatgatatcacagacacatggctcccaggtaacaagctcagtcttaacaaggtgactggagtgccagaaaggatgatctcttggaaaaaccttggtgatccagcaccaggaatgttctctgtagagattgatccagatggctcaaaccagtacattatctcgtggaataagtctgtggtgtattggggtactggtaattggactggcagttcAtttcctaacatgccagagttgtcacctgctaatacctatcccaacaccccttacacttataagtttgttaacaatgacaaggagacatacttcacctacaatgttacagatgatagagtattatcaaggcatgccattggtgtgtcaggtcaaactcagtctttggtatgggtagagtcagcacaagcctgggtactctatttttcacaaccgaaagcaaattgtggcgtctgcctcaagggcttcagcattcgtgatccaaatagttggaatcttggtgatcaaactgctggttgtaggagaaatgtcatgctgcaatgcggaagcaagagttcagcaggaggacagcaagataggttctatacaataggcagtgtcaagcttcctgacaaatcacagagtattgaggctaccagtattcacagctgcaaattggcttgcctgagtaattgttcctgtactgcctactcttataatggtacttgttcactttggcactcagagcttatgaacttgcaagacagcactgatgggactatggactccatttatattcgattggcagcatcagagctaccaaattcaagaaccaagaaatggtggattattgggattatcgctggtggatttgctactcttggtcttgtggtgatagttttttattctctccatgggagaagacggattagtagtatgaatcacactgatgggtctctgatcactttcaaatacagcgatcttcaaatcctaaccaaaaacttttctgagagactgggtgtggggtctttcggctctgtgttcaaaggggctttaccagatacaactgcaatggcagttaagaagcttgagggtgtccgtcagggagagaagcaattccgggcagaagtgagcactattggaactattcatcacatcaatttgattcaactacttgggttttgttctgaaggggcaaagagattgcttgtctatgaatatatgcccaatggttcattggaccatcatctattcgggagtagcggtgtgtcattaagttggagcacaagatatcaaattgctgctggaatcgccaaaggattagcttacctgcatgagaaatgcagggattgcatcatacattgtgatatcaagCcccagaatatatttctggactcatcatttactccaaaggtggcggactttggaatggcaaagctcttaggccgggattttagtagggttttaacgtcaatgagaggcaccataggttatcttgcaccagagtggataagcggtgaggccatcacaacaaaggcagatgttttcagctacggaatgatgcTtttcgagatcatatctggaaagaggaacggtatgcatggaggctcattctttccagtgttagttgcgagggagcttgtagaaggagagttgcacaagttgtttggttctgaatcaagtgatgacatgaacctaggcgagcttgatagggcatgcaaggTTgcttgttggtgcgttcaagacagtgagagctccaggccgacaatgggggaagtcgttcagatcctagaaggactggtagatgttgaaatgccaccagttccaagatatcttcaggttcttggtcaaggtgtgaaatcatatgaaatttcttctgagatgaatcaagctagtaactag
More
|
||||||||||
| Protein seq | MVVPCMPLTLTVSRPLTGDQKLVSERGKFALGFFQPKAGGSTGKWYVGIWYNKISVQTVVWVANREKPVSDPSSSSLSILDDGNIILSHSNSTVWSTNSTNTGSSPMVAVLLDTGNLVIRQESNASSVLWQSFDDITDTWLPGNKLSLNKVTGVPERMISWKNLGDPAPGMFSVEIDPDGSNQYIISWNKSVVYWGTGNWTGSSFPNMPELSPANTYPNTPYTYKFVNNDKETYFTYNVTDDRVLSRHAIGVSGQTQSLVWVESAQAWVLYFSQPKANCGVCLKGFSIRDPNSWNLGDQTAGCRRNVMLQCGSKSSAGGQQDRFYTIGSVKLPDKSQSIEATSIHSCKLACLSNCSCTAYSYNGTCSLWHSELMNLQDSTDGTMDSIYIRLAASELPNSRTKKWWIIGIIAGGFATLGLVVIVFYSLHGRRRISSMNHTDGSLITFKYSDLQILTKNFSERLGVGSFGSVFKGALPDTTAMAVKKLEGVRQGEKQFRAEVSTIGTIHHINLIQLLGFCSEGAKRLLVYEYMPNGSLDHHLFGSSGVSLSWSTRYQIAAGIAKGLAYLHEKCRDCIIHCDIKPQNIFLDSSFTPKVADFGMAKLLGRDFSRVLTSMRGTIGYLAPEWISGEAITTKADVFSYGMMLFEIISGKRNGMHGGSFFPVLVARELVEGELHKLFGSESSDDMNLGELDRACKVACWCVQDSESSRPTMGEVVQILEGLVDVEMPPVPRYLQVLGQGVKSYEISSEMNQASN |
||||||||||
| Function | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [UniProtKB/Swiss-Prot:O64477] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0042260 | OsNaBo_01g0042260.01 | Chr01 | 39153698 | 39160017 | + | NAM | ||
| CDS seq | atggtcgtgccttgcatgccactgacgctcacagtgagccggccgctcaccggcgaccagaagttagtctcggagcgcggcaagttcgcgctcggattcttccagcccaaagctggaggatctactggcaagtggtacgtgggcatttggtacaacaaaatctcagtgcaaacagttgtatgggtggctaatagggaaaaacctgtatctgatccatcgtcatcaagcctgtccatcttggatgatggaaacattatccttagtcattctaattcgaccgtctggtcaaccaattcaacaaatacaggttccagtcccatggttgctgtgctccttgatacagggaacttagttattagacaggagtccaatgcttcaagtgtgctctggcaaagtttcgatgatatcacagacacatggctcccaggtaacaagctcagtcttaacaaggtgactggagtgccagaaaggatgatctcttggaaaaaccttggtgatccagcaccaggaatgttctctgtagagattgatccagatggctcaaaccagtacattatctcgtggaataagtctgtggtgtattggggtactggtaattggactggcagttcAtttcctaacatgccagagttgtcacctgctaatacctatcccaacaccccttacacttataagtttgttaacaatgacaaggagacatacttcacctacaatgttacagatgatagagtattatcaaggcatgccattggtgtgtcaggtcaaactcagtctttggtatgggtagagtcagcacaagcctgggtactctatttttcacaaccgaaagcaaattgtggcgtctgcctcaagggcttcagcattcgtgatccaaatagttggaatcttggtgatcaaactgctggttgtaggagaaatgtcatgctgcaatgcggaagcaagagttcagcaggaggacagcaagataggttctatacaataggcagtgtcaagcttcctgacaaatcacagagtattgaggctaccagtattcacagctgcaaattggcttgcctgagtaattgttcctgtactgcctactcttataatggtacttgttcactttggcactcagagcttatgaacttgcaagacagcactgatgggactatggactccatttatattcgattggcagcatcagagctaccaaattcaagaaccaagaaatggtggattattgggattatcgctggtggatttgctactcttggtcttgtggtgatagttttttattctctccatgggagaagacggattagtagtatgaatcacactgatgggtctctgatcactttcaaatacagcgatcttcaaatcctaaccaaaaacttttctgagagactgggtgtggggtctttcggctctgtgttcaaaggggctttaccagatacaactgcaatggcagttaagaagcttgagggtgtccgtcagggagagaagcaattccgggcagaagtgagcactattggaactattcatcacatcaatttgattcaactacttgggttttgttctgaaggggcaaagagattgcttgtctatgaatatatgcccaatggttcattggaccatcatctattcgggagtagcggtgtgtcattaagttggagcacaagatatcaaattgctgctggaatcgccaaaggattagcttacctgcatgagaaatgcagggattgcatcatacattgtgatatcaagCcccagaatatatttctggactcatcatttactccaaaggtggcggactttggaatggcaaagctcttaggccgggattttagtagggttttaacgtcaatgagaggcaccataggttatcttgcaccagagtggataagcggtgaggccatcacaacaaaggcagatgttttcagctacggaatgatgcTtttcgagatcatatctggaaagaggaacggtatgcatggaggctcattctttccagtgttagttgcgagggagcttgtagaaggagagttgcacaagttgtttggttctgaatcaagtgatgacatgaacctaggcgagcttgatagggcatgcaaggTTgcttgttggtgcgttcaagacagtgagagctccaggccgacaatgggggaagtcgttcagatcctagaaggactggtagatgttgaaatgccaccagttccaagatatcttcaggttcttggtcaaggtgtgaaatcatatgaaatttcttctgagatgaatcaagctagtaactag
More
|
|||||||
| Protein seq | MVVPCMPLTLTVSRPLTGDQKLVSERGKFALGFFQPKAGGSTGKWYVGIWYNKISVQTVVWVANREKPVSDPSSSSLSILDDGNIILSHSNSTVWSTNSTNTGSSPMVAVLLDTGNLVIRQESNASSVLWQSFDDITDTWLPGNKLSLNKVTGVPERMISWKNLGDPAPGMFSVEIDPDGSNQYIISWNKSVVYWGTGNWTGSSFPNMPELSPANTYPNTPYTYKFVNNDKETYFTYNVTDDRVLSRHAIGVSGQTQSLVWVESAQAWVLYFSQPKANCGVCLKGFSIRDPNSWNLGDQTAGCRRNVMLQCGSKSSAGGQQDRFYTIGSVKLPDKSQSIEATSIHSCKLACLSNCSCTAYSYNGTCSLWHSELMNLQDSTDGTMDSIYIRLAASELPNSRTKKWWIIGIIAGGFATLGLVVIVFYSLHGRRRISSMNHTDGSLITFKYSDLQILTKNFSERLGVGSFGSVFKGALPDTTAMAVKKLEGVRQGEKQFRAEVSTIGTIHHINLIQLLGFCSEGAKRLLVYEYMPNGSLDHHLFGSSGVSLSWSTRYQIAAGIAKGLAYLHEKCRDCIIHCDIKPQNIFLDSSFTPKVADFGMAKLLGRDFSRVLTSMRGTIGYLAPEWISGEAITTKADVFSYGMMLFEIISGKRNGMHGGSFFPVLVARELVEGELHKLFGSESSDDMNLGELDRACKVACWCVQDSESSRPTMGEVVQILEGLVDVEMPPVPRYLQVLGQGVKSYEISSEMNQASN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.566720 | 0.0 | 0.623648 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0890600 | RBH | 0.610970 | 0.597934 | 0.425240 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g66680 | RBH | 0.331265 | 0.308791 | 0.117149 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0890600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0043170 | RBH | 0.254172 | 0.0 | 0.726499 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0042760 | RBH | 0.099470 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0043110 | RBH | 0.326091 | 0.0 | 0.992156 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0042560 | RBH | 0.054087 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0042160 | RBH | 0.800334 | 0.0 | 1.293878 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0637800 | RBH | 0.9955175 | 0.0870205 | 1.2743665 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0041790 | RBH | 0.073972 | 0.061314 | 0.141336 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0638500 | RBH | 0.588716 | 0.0669565 | 3.221829 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0042140 | RBH | 0.151574 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0042080 | RBH | 0.205415 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0042360 | RBH | 3.542184 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0042290 | RBH | 0.352071 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0042150 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G042560 | RBH | 0.0 | 0.0 | 0.267001 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0017070 | SBH | 0.0 | 0.0 | 0.0 |
