Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0040570 | OGI:01111300 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:37890255-37891128 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aactcttctcccacgagaccaacgttttctactgtgcacgtgcgtacgttggtttcctcttggagttttacacgaaggaattgaagtgagctaccaagacatggacgtcgaacagctgcagcagcatgccaggaggcttctgtcgaacggcagggtggtgtcggcggcggcggcgcgtcgtccggcaccgttcagctcgctggacgcgacggtgatcacggtcctgtccctcctcctctgcgtgctcgtcgtcgggctcgtgctccacgcgatcgcccggtgcgcgttccgcgtcacgcggcgcatgtgctacggccaggagccgcccggggatcacggcgacgaggcggcggcggagcgatgcgcccgggtagccaggaagaagccgggacgcgccatcgcggagaagatccccgcgatcgtctgcccggccggcgggctcgatcggctcgccggctgcggctcgacggagtgcgccatctgcctcgccgagttcgcgcagggtcaccgcgtccgcgtgctgccgcgctgcggccacggcttccacgcgcggtgcattgaccgatggctcgccgcgaggcagacctgcccgacgtgcaggcgggagccgttcgcggcggccgcggccgtgcagctgcaggtttaccctgacgccgccggcggccagcacgagacgccttagcaccaacgtgactcaactgtacagtaggctatcagtagttgggaacacagtgaacatttttttgcTtttcttttgtcatccgagatactgtggtcattatctctgTttttttttcttttctgttatgttcatgtcgaagtgacccggttccgatgaaatgaaggtgaaaaccaCccgagtaaactttactga
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| CDS seq | atggacgtcgaacagctgcagcagcatgccaggaggcttctgtcgaacggcagggtggtgtcggcggcggcggcgcgtcgtccggcaccgttcagctcgctggacgcgacggtgatcacggtcctgtccctcctcctctgcgtgctcgtcgtcgggctcgtgctccacgcgatcgcccggtgcgcgttccgcgtcacgcggcgcatgtgctacggccaggagccgcccggggatcacggcgacgaggcggcggcggagcgatgcgcccgggtagccaggaagaagccgggacgcgccatcgcggagaagatccccgcgatcgtctgcccggccggcgggctcgatcggctcgccggctgcggctcgacggagtgcgccatctgcctcgccgagttcgcgcagggtcaccgcgtccgcgtgctgccgcgctgcggccacggcttccacgcgcggtgcattgaccgatggctcgccgcgaggcagacctgcccgacgtgcaggcgggagccgttcgcggcggccgcggccgtgcagctgcaggtttaccctgacgccgccggcggccagcacgagacgccttag
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| Protein seq | MDVEQLQQHARRLLSNGRVVSAAAARRPAPFSSLDATVITVLSLLLCVLVVGLVLHAIARCAFRVTRRMCYGQEPPGDHGDEAAAERCARVARKKPGRAIAEKIPAIVCPAGGLDRLAGCGSTECAICLAEFAQGHRVRVLPRCGHGFHARCIDRWLAARQTCPTCRREPFAAAAAVQLQVYPDAAGGQHETP |
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| Function | RING-H2 finger protein ATL72 [UniProtKB/Swiss-Prot:Q9SG96] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0040570 | OsNaBo_01g0040570.01 | Chr01 | 37890255 | 37891128 | + | NAM | ||
| CDS seq | atggacgtcgaacagctgcagcagcatgccaggaggcttctgtcgaacggcagggtggtgtcggcggcggcggcgcgtcgtccggcaccgttcagctcgctggacgcgacggtgatcacggtcctgtccctcctcctctgcgtgctcgtcgtcgggctcgtgctccacgcgatcgcccggtgcgcgttccgcgtcacgcggcgcatgtgctacggccaggagccgcccggggatcacggcgacgaggcggcggcggagcgatgcgcccgggtagccaggaagaagccgggacgcgccatcgcggagaagatccccgcgatcgtctgcccggccggcgggctcgatcggctcgccggctgcggctcgacggagtgcgccatctgcctcgccgagttcgcgcagggtcaccgcgtccgcgtgctgccgcgctgcggccacggcttccacgcgcggtgcattgaccgatggctcgccgcgaggcagacctgcccgacgtgcaggcgggagccgttcgcggcggccgcggccgtgcagctgcaggtttaccctgacgccgccggcggccagcacgagacgccttag
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| Protein seq | MDVEQLQQHARRLLSNGRVVSAAAARRPAPFSSLDATVITVLSLLLCVLVVGLVLHAIARCAFRVTRRMCYGQEPPGDHGDEAAAERCARVARKKPGRAIAEKIPAIVCPAGGLDRLAGCGSTECAICLAEFAQGHRVRVLPRCGHGFHARCIDRWLAARQTCPTCRREPFAAAAAVQLQVYPDAAGGQHETP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 20.128582 | 2.566344 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0866000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g64620 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0866000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0041470 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0041000 | RBH | 0.0 | 1.086174 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0041390 | RBH | 0.0 | 2.666820 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0040860 | RBH | 0.0 | 0.058643 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0040410 | RBH | 0.0 | 3.519974 | 1.152657 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0616900 | RBH | 0.556923 | 52.977102 | 1.089301 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0040080 | RBH | 0.000000 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0616400 | RBH | 0.6183745 | 63.505585 | 0.071493 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0040420 | RBH | 0.0 | 0.129403 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0040390 | RBH | 0.0 | 3.626697 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0040640 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0040590 | RBH | 0.0 | 0.0 | 0.229299 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0040450 | RBH | 0.0 | 0.739163 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G040900 | RBH | 0.0 | 2.945125 | 0.425982 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0018440 | RBH | 0.385440 | 16.030210 | 1.715839 |
