Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0040040 | OGI:01110150 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:37519065-37521055 | ||||||||
| Gene Symbol | CYP94C3, OsCYP94C3, OsGL1 | ||||||||||
| DNA seq | ggtctgataggttcgcaatcgatcgattcccagaatctaccgctccatctcgagtggtggaggcaactgactagtcgtccagcatcaagtttggtgctgccaagtgccaacgcactcagccactcacgagtggtcgcggagtcatcgatcataatcgacagctactactcgagcggaagcgcgtgatgcatgtaacctaattaatattccagttcgaaaagaagcacagaagaacaaatcgtgatgacacgaaccagtttgtttgctctaccTAttaaattggCgggttgtgcccgctcgcacgtgctcgccgccggcgcactctcaccggcaagccgcctgcgaacgtggcggtcaggcccggcgcgaacttgggccgccgcgagctccgcgcgatcgcctcgatgtcgaagctccggacgacggcgacgatgacggctttcatctccatgagggctagctccttgccgatgcagacgcgaacgCccgcctggaacaccgggtaacggtacgggctctCcgggacgaaccggccgtcccggagccatcgctccggccggaactcggcgcagtcggggCcccatacggactccatccggcccatggcgtaggcgtggtaggtcacccgggtgcccttcgcgacgaccgtgccgtccggcagcgtatcgtcgccggcggcaaacttggaatcgaactgcactggcgggaacaggcgcatgctctcgtacatcgcggcgtgcacatagtgcatgtccttgagcttgtcgaatgtggcggccatggttcggttgccgtcgCccgtgacgcgggcgacctcgtctcggatggcggtggcgacctctgggtgatcggagaggagcaggaagaaggcggtgagcgccgaggcgatggtgtcgcggccggcgagcatgaagctgacgacgatgtcgcggaggtacttGTCgtcgtcgatggagcccatgaagcgtgaaaggaggtcgctgccggtggcagcgccgccaagcttccgccgttgtcggatgacctccgccgcgagcgcgtcgaccaaacggaccgcgtcccggagCTTCctttcgtccccgacgttcaagaaccgcttcagcctccagattatctgcatgggcaccgtcgcccgccgcgcggagagtgtcgacgccgtgtcgaacgcttccacgagcgtcgatacaggcatcgacagctcgaggcagccagggtcgaggccaaacgagatcttgcatatgctgtcgaaggcgaagcggcggaacatgtcttgcaggtcgagcaccttgccgttgccctcacgtgaagcagagtggagcagagggatgaggcggcacctcagctcggaggccacgacacgcgccgcgaaggcgcggagcgccggagaggagagctcggcagcggcgagcttgcgctggaagagccacgcgtcaccgtcgacgttaaatatcccgcggccgaggaagtcggcgaggatggcggagaagggagcgcccttgggatagttgtcgaagcgggcgcggagcacgtggtcgacggtgaccgggttggcggtgagcacgttgcggaggacgtgcacgtgcacggtctgcgccggcgaggtgcgcagcaggtgggcgtaccagtcgcagaggttgtcgaactctCccgcccacgacgccgtcaggtaggcctcgcacacggtgcagtcgcaccaccacggcgggcgcaggcgcaccacggcaaggagcgcggcgagggccaccgtgcacgccgagaACacgaagaaggcggtggccacgtgcggctgcagcgacccagccagggcctccaccgccccatgcaacgcctctgcctcgacgacacccatggagacgagctgcggcgcctgcgactgcgtgcgtgcgtgtgtgcgtggtgcgcgcgggctttcataggcgggggcgcgtgcgtttgcttgtgacgatcgtggcgtcccgggagggggccgttttataccagcgggacgtctc
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| CDS seq | atgggtgtcgtcgaggcagaggcgttgcatggggcggtggaggccctggctgggtcgctgcagccgcacgtggccaccgccttcttcgtGTtctcggcgtgcacggtggccctcgccgcgctccttgccgtggtgcgcctgcgcccgccgtggtggtgcgactgcaccgtgtgcgaggcctacctgacggcgtcgtgggcggGagagttcgacaacctctgcgactggtacgcccacctgctgcgcacctcgccggcgcagaccgtgcacgtgcacgtcctccgcaacgtgctcaccgccaacccggtcaccgtcgaccacgtgctccgcgcccgcttcgacaactatcccaagggcgctcccttctccgccatcctcgccgacttcctcggccgcgggatatttaacgtcgacggtgacgcgtggctcttccagcgcaagctcgccgctgccgagctctcctctccggcgctccgcgccttcgcggcgcgtgtcgtggcctccgagctgaggtgccgcctcatccctctgctccactctgcttcacgtgagggcaacggcaaggtgctcgacctgcaagacatgttccgccgcttcgccttcgacagcatatgcaagatctcgtttggcctcgaccctggctgcctcgagctgtcgatgcctgtatcgacgctcgtggaagcgttcgacacggcgtcgacactctccgcgcggcgggcgacggtgcccatgcagataatctggaggctgaagcggttcttgaacgtcggggacgaaagGAAGctccgggacgcggtccgtttggtcgacgcgctcgcggcggaggtcatccgacaacggcggaagcttggcggcgctgccaccggcagcgacctcctttcacgcttcatgggctccatcgacgacGACaagtacctccgcgacatcgtcgtcagcttcatgctcgccggccgcgacaccatcgcctcggcgctcaccgccttcttcctgctcctctccgatcacccagaggtcgccaccgccatccgagacgaggtcgcccgcgtcacggGcgacggcaaccgaaccatggccgccacattcgacaagctcaaggacatgcactatgtgcacgccgcgatgtacgagagcatgcgcctgttcccgccagtgcagttcgattccaagtttgccgccggcgacgatacgctgccggacggcacggtcgtcgcgaagggcacccgggtgacctaccacgcctacgccatgggccggatggagtccgtatgggGccccgactgcgccgagttccggccggagcgatggctccgggacggccggttcgtcccgGagagcccgtaccgttacccggtgttccaggcggGcgttcgcgtctgcatcggcaaggagctagccctcatggagatgaaagccgtcatcgtcgccgtcgtccggagcttcgacatcgaggcgatcgcgcggagctcgcggcggcccaagttcgcgccgggcctgaccgccacgttcgcaggcggcttgccggtgagagtgcgccggcggcgagcacgtgcgagcgggcacaacccGccaatttaa
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| Protein seq | MGVVEAEALHGAVEALAGSLQPHVATAFFVFSACTVALAALLAVVRLRPPWWCDCTVCEAYLTASWAGEFDNLCDWYAHLLRTSPAQTVHVHVLRNVLTANPVTVDHVLRARFDNYPKGAPFSAILADFLGRGIFNVDGDAWLFQRKLAAAELSSPALRAFAARVVASELRCRLIPLLHSASREGNGKVLDLQDMFRRFAFDSICKISFGLDPGCLELSMPVSTLVEAFDTASTLSARRATVPMQIIWRLKRFLNVGDERKLRDAVRLVDALAAEVIRQRRKLGGAATGSDLLSRFMGSIDDDKYLRDIVVSFMLAGRDTIASALTAFFLLLSDHPEVATAIRDEVARVTGDGNRTMAATFDKLKDMHYVHAAMYESMRLFPPVQFDSKFAAGDDTLPDGTVVAKGTRVTYHAYAMGRMESVWGPDCAEFRPERWLRDGRFVPESPYRYPVFQAGVRVCIGKELALMEMKAVIVAVVRSFDIEAIARSSRRPKFAPGLTATFAGGLPVRVRRRRARASGHNPPI |
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| Function | Cytochrome P450 94C1 [UniProtKB/Swiss-Prot:Q9ZUX1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0040040 | OsNaBo_01g0040040.01 | Chr01 | 37519065 | 37521055 | - | NAM | ||
| CDS seq | atgggtgtcgtcgaggcagaggcgttgcatggggcggtggaggccctggctgggtcgctgcagccgcacgtggccaccgccttcttcgtGTtctcggcgtgcacggtggccctcgccgcgctccttgccgtggtgcgcctgcgcccgccgtggtggtgcgactgcaccgtgtgcgaggcctacctgacggcgtcgtgggcggGagagttcgacaacctctgcgactggtacgcccacctgctgcgcacctcgccggcgcagaccgtgcacgtgcacgtcctccgcaacgtgctcaccgccaacccggtcaccgtcgaccacgtgctccgcgcccgcttcgacaactatcccaagggcgctcccttctccgccatcctcgccgacttcctcggccgcgggatatttaacgtcgacggtgacgcgtggctcttccagcgcaagctcgccgctgccgagctctcctctccggcgctccgcgccttcgcggcgcgtgtcgtggcctccgagctgaggtgccgcctcatccctctgctccactctgcttcacgtgagggcaacggcaaggtgctcgacctgcaagacatgttccgccgcttcgccttcgacagcatatgcaagatctcgtttggcctcgaccctggctgcctcgagctgtcgatgcctgtatcgacgctcgtggaagcgttcgacacggcgtcgacactctccgcgcggcgggcgacggtgcccatgcagataatctggaggctgaagcggttcttgaacgtcggggacgaaagGAAGctccgggacgcggtccgtttggtcgacgcgctcgcggcggaggtcatccgacaacggcggaagcttggcggcgctgccaccggcagcgacctcctttcacgcttcatgggctccatcgacgacGACaagtacctccgcgacatcgtcgtcagcttcatgctcgccggccgcgacaccatcgcctcggcgctcaccgccttcttcctgctcctctccgatcacccagaggtcgccaccgccatccgagacgaggtcgcccgcgtcacggGcgacggcaaccgaaccatggccgccacattcgacaagctcaaggacatgcactatgtgcacgccgcgatgtacgagagcatgcgcctgttcccgccagtgcagttcgattccaagtttgccgccggcgacgatacgctgccggacggcacggtcgtcgcgaagggcacccgggtgacctaccacgcctacgccatgggccggatggagtccgtatgggGccccgactgcgccgagttccggccggagcgatggctccgggacggccggttcgtcccgGagagcccgtaccgttacccggtgttccaggcggGcgttcgcgtctgcatcggcaaggagctagccctcatggagatgaaagccgtcatcgtcgccgtcgtccggagcttcgacatcgaggcgatcgcgcggagctcgcggcggcccaagttcgcgccgggcctgaccgccacgttcgcaggcggcttgccggtgagagtgcgccggcggcgagcacgtgcgagcgggcacaacccGccaatttaa
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| Protein seq | MGVVEAEALHGAVEALAGSLQPHVATAFFVFSACTVALAALLAVVRLRPPWWCDCTVCEAYLTASWAGEFDNLCDWYAHLLRTSPAQTVHVHVLRNVLTANPVTVDHVLRARFDNYPKGAPFSAILADFLGRGIFNVDGDAWLFQRKLAAAELSSPALRAFAARVVASELRCRLIPLLHSASREGNGKVLDLQDMFRRFAFDSICKISFGLDPGCLELSMPVSTLVEAFDTASTLSARRATVPMQIIWRLKRFLNVGDERKLRDAVRLVDALAAEVIRQRRKLGGAATGSDLLSRFMGSIDDDKYLRDIVVSFMLAGRDTIASALTAFFLLLSDHPEVATAIRDEVARVTGDGNRTMAATFDKLKDMHYVHAAMYESMRLFPPVQFDSKFAAGDDTLPDGTVVAKGTRVTYHAYAMGRMESVWGPDCAEFRPERWLRDGRFVPESPYRYPVFQAGVRVCIGKELALMEMKAVIVAVVRSFDIEAIARSSRRPKFAPGLTATFAGGLPVRVRRRRARASGHNPPI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.477395 | 3.970918 | 3.105686 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0858350 | RBH | 0.139193 | 0.0 | 0.680407 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g63930 | RBH | 0.087333 | 0.0 | 0.121878 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0858350 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0040910 | RBH | 0.0 | 0.0 | 1.093762 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0040410 | RBH | 0.130338 | 1.089272 | 0.162114 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0040800 | RBH | 0.0 | 0.0 | 2.009679 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0040270 | RBH | 0.036237 | 0.028980 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0039840 | RBH | 3.154702 | 1.728606 | 5.455555 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0610400 | RBH | 4.8971605 | 16.365635 | 18.425546 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0039510 | RBH | 0.048597 | 0.080294 | 0.433307 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0609700 | RBH | 6.4596275 | 14.37177 | 1.865227 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0039870 | RBH | 0.041610 | 0.060625 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0039810 | RBH | 0.0 | 1.512320 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0040050 | RBH | 1.179270 | 3.171404 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0040020 | RBH | 0.185159 | 0.179855 | 0.462500 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0039900 | RBH | 0.176722 | 2.783566 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G040350 | RBH | 0.0 | 0.890491 | 0.483328 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0018750 | RBH | 0.643809 | 3.945878 | 0.399555 |
