Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0038770 | OGI:01107270 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:36447521-36450356 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgattcttatcaaatttcagggcagatcagacaatattcctaaagaaattgctgctgttgtttcacagaaatttacctttgctgtctctgtcactgagcggagccttatgcacaggaatatatcttttcaagttaatggaattgagactttctttggaagacagggttctattccgcagcctagggaatagggtccatctgcaggcccttctactcctttggctcttgctgcttctggtatggataaggatgacgcctctcaatctcatgagtcaaccccggtcGATTCATCTACTTCGACTGCTGATCCAGTCGATGAACTTCCTGGTGACAGCAAGAAGCGGAAATCCATTGTCCGTCATGTACGCCCTTCCATTCATATCCCATACATTACCTTTTGCTTTTTTTATGGCCCTTCTTTTTATATATCTGATTGCTATTCCAGCCTCTAGCAGCACAGAAAAAATTGACCTTTGAAACAGCTCCATCCAGCAAAGAAAACACCAGCCCGGTTGACCCTCCTACTAGGTACAAGTGTTTTTCCACACTTCTTGTTCTTCTTATATGTTGAAACTTTCTCTATGTTACATCTGCTTTCTAATTTTTATGGCCAACAGTAAATGTGGTTTGCCTCTGCTACATAGCAGAGCACGGTCTGTCCCTCCACTTCAATCAGATATAAGCATCCAACCCATTCTATTTAGTGAGAAACCATGCATTATGAACATATTAATGTAGGTTCCTTGTTGATCTATATTCCTAATCATCCTACCTAGGCCTAATAGACCTAAATAAGTCTTTGCTATTTCTCTTGCTTCCATATGCCATTCCGTACCTTttggtctactctgtactttgttccgccgtataaattgcctgtatgctaaatagaaccactttacattactatgacatggcctgctagctaatcaaaagaaacatgctcatagacaactacataacattatttactacaggcagattagttgcttatttgttatcttttatatgggatgtaatgcgctccaaaatgatctgcatatggcctaccatgttttgctaccactgaccattgcacgcagcctaccagttAtatcttttgctttgcataggcatatcatgtaatattactaaccatgatggctatctgctatatttctcagttcttctcgcactgatgaccaagctgctgataagcaacatgctgtgtctcatgaggttgatgtttctcagattgcagctgcctctgctgaaccaaatactcaggttaagcataaatacaccactttccagctaattcagtggtcgattttttttagtgacactggtaacctaattattcccgttctataggtcaaagatatcctgccaactgaagccaaaaagaaaaggtataaaactacatattcaagctgagaacgaataagaaaatccctaTTTttgtactagcggtggaagcatgccacattcattgttaaatagactgcaccatttcgctttcgctgctctcccgtttttggttcttctagattaaccaggtgttcctctctgctttagtgttgatccaggctctacaggcacacgcaagactaagcctcctgtaccgaaagggaactaatttgctcaccttagcttttgtgctgatgtgagtatcctgttctgTTAtatatctatgggcatggcattagtttcacctagattgctgatcactttaaattatttttcaagggaacaataccctacatcagcgatcccaCcctatgtctacATatttccttaatcttactgttggcgatgcagcttgacatggcacatcgtatcagacaatcttttgTttacatgattgctggcaccactgtgtccatgcatgtgcatgTttggtcctctacctgctgCTctttcgccctttagtgtcagtgtgctttccataccgtagcagagacttcctatgaaacgctgccatacgactgcacatcaccccatcttttgcttgtatgttatttattgtaaccatgactgtcaatgtccatatggtgctctgtcagtcctatgaactcgttcagcaaaCccccttctgttatggatcatattaatgcactagcgttctatctgctgttgttctgttcatattacatgccttgcagctgctttggatatatatagcacttgtgatacactatcgtcattaaaagcttatgtttcatgtgctatgtgcctgtgcaggaatttgaaaTttgtagcatttccatcctacccagctaatgtgataagtaggaTtttgtgccatcctttctgtcctaaagaaagggtgggcaaaatttgcagccAaaaatagcatacgcgttggatcgatctgcattttccacttctacagagcaagccagatgcaaatgacatgcaaatgaccatcgatgttctgtagaccacacgtgaatagtcaatgtattcaggaccacttactagctctactgccactgctatgttaattagtgttgcaccttaagattattatcataggtactgcagcaccttacaaatatcagacatatgtatgttgttagcgctgcaatctacttatctattgtcgtctgctttcattacttttcccccaccaacacTttttaaccgttctttcctggctatcagcttattgggcggcacacgtgCgtacaggcggcgcgccaagggcgcgCcccaacctctagtagtgttaataggtgatttaccacACAactggtcaaactgtgcatttagagctagcaaataCTtcttgtaCTcatttcctatttattgcttctccaaaattattttctagatcactacagaactgaatct
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| CDS seq | atgattcttatcaaatttcagggcagatcagacaatattcctaaagaaattgctgctgttgtttcacagaaatttacctttgctgtctctgtcactgagcggagccttatgcacaggaatatatcttttcaagttaatggaattgagactttctttggaagacagggcccttctactcctttggctcttgctgcttctggtatggataaggatgacgcctctcaatctcatgagtcaaccccggtcGATTCATCTACTTCGACTGCTGATCCAGTCGATGAACTTCCTGGTGACAGCAAGAAGCGGAAATCCATTGTCCGTCATCCTCTAGCAGCACAGAAAAAATTGACCTTTGAAACAGCTCCATCCAGCAAAGAAAACACCAGCCCGGTTGACCCTCCTACTAGttcttctcgcactgatgaccaagctgctgataagcaacatgctgtgtctcatgaggttgatgtttctcagattgcagctgcctctgctgaaccaaatactcaggtcaaagatatcctgccaactgaagccaaaaagaaaagtgttgatccaggctctacaggcacacgcaagactaagcctcctgtaccgaaagggaactaa
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| Protein seq | MILIKFQGRSDNIPKEIAAVVSQKFTFAVSVTERSLMHRNISFQVNGIETFFGRQGPSTPLALAASGMDKDDASQSHESTPVDSSTSTADPVDELPGDSKKRKSIVRHPLAAQKKLTFETAPSSKENTSPVDPPTSSSRTDDQAADKQHAVSHEVDVSQIAAASAEPNTQVKDILPTEAKKKSVDPGSTGTRKTKPPVPKGN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0038770 | OsNaBo_01g0038770.02 | Chr01 | 36447521 | 36449307 | + | NAM | ||
| CDS seq | atgattcttatcaaatttcagggcagatcagacaatattcctaaagaaattgctgctgttgtttcacagaaatttacctttgctgtctctgtcactgagcggagccttatgcacaggaatatatcttttcaagttaatggaattgagactttctttggaagacagggcccttctactcctttggctcttgctgcttctggtatggataaggatgacgcctctcaatctcatgagtcaaccccggtcGATTCATCTACTTCGACTGCTGATCCAGTCGATGAACTTCCTGGTGACAGCAAGAAGCGGAAATCCATTGTCCGTCATCCTCTAGCAGCACAGAAAAAATTGACCTTTGAAACAGCTCCATCCAGCAAAGAAAACACCAGCCCGGTTGACCCTCCTACTAGttcttctcgcactgatgaccaagctgctgataagcaacatgctgtgtctcatgaggttgatgtttctcagattgcagctgcctctgctgaaccaaatactcaggtcaaagatatcctgccaactgaagccaaaaagaaaagtgttgatccaggctctacaggcacacgcaagactaagcctcctgtaccgaaagggaactaa
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| Protein seq | MILIKFQGRSDNIPKEIAAVVSQKFTFAVSVTERSLMHRNISFQVNGIETFFGRQGPSTPLALAASGMDKDDASQSHESTPVDSSTSTADPVDELPGDSKKRKSIVRHPLAAQKKLTFETAPSSKENTSPVDPPTSSSRTDDQAADKQHAVSHEVDVSQIAAASAEPNTQVKDILPTEAKKKSVDPGSTGTRKTKPPVPKGN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0038770 | OsNaBo_01g0038770.01 | Chr01 | 36447521 | 36450356 | + | NAM | ||
| CDS seq | atgattcttatcaaatttcagggcagatcagacaatattcctaaagaaattgctgctgttgtttcacagaaatttacctttgctgtctctgtcactgagcggagccttatgcacaggaatatatcttttcaagttaatggaattgagactttctttggaagacagggcccttctactcctttggctcttgctgcttctggtatggataaggatgacgcctctcaatctcatgagtcaaccccggtcGATTCATCTACTTCGACTGCTGATCCAGTCGATGAACTTCCTGGTGACAGCAAGAAGCGGAAATCCATTGTCCGTCATCCTCTAGCAGCACAGAAAAAATTGACCTTTGAAACAGCTCCATCCAGCAAAGAAAACACCAGCCCGGTTGACCCTCCTACTAGttcttctcgcactgatgaccaagctgctgataagcaacatgctgtgtctcatgaggttgatgtttctcagattgcagctgcctctgctgaaccaaatactcaggtcaaagatatcctgccaactgaagccaaaaagaaaagtgttgatccaggctctacaggcacacgcaagactaagcctcctgtaccgaaagggaactaa
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| Protein seq | MILIKFQGRSDNIPKEIAAVVSQKFTFAVSVTERSLMHRNISFQVNGIETFFGRQGPSTPLALAASGMDKDDASQSHESTPVDSSTSTADPVDELPGDSKKRKSIVRHPLAAQKKLTFETAPSSKENTSPVDPPTSSSRTDDQAADKQHAVSHEVDVSQIAAASAEPNTQVKDILPTEAKKKSVDPGSTGTRKTKPPVPKGN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AL | Chr01 | 36449166 | 36450356 | + | OsNaBo_01g0038770.02 | OsNaBo_01g0038770.02,OsNaBo_01g0038770.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0132900 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g62100 | SBH | 1.121567 | 0.859795 | 0.399687 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0132900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0039590 | RBH | 0.097585 | 0.000000 | 1.782967 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0039050 | SBH | 0.102747 | 0.000000 | 1.620798 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0039470 | RBH | 0.000000 | 0.0 | 6.089313 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0038940 | RBH | 0.289196 | 0.053614 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0038200 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0591300 | RBH | 0.0019225 | 0 | 0.0013665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0038720 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
