Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0031770 | OGI:01092240 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:31051146-31052521 | ||||||||
| Gene Symbol | OFP3, OsOFP3, OsOFP04, OFP4 | ||||||||||
| DNA seq | gagatagaccaaccccccactccCGcgcgctcatccatctatccatccatccatacacgcagcgcacgaacaagacagagtcacgggcacgaagtcactcatggacggcggcggctcaggcgccgggcgcaagaagctgaagcacaggctcgctgccatcctctcggtcttcaccaggcgggcaggtgacaggaagcgccgcggcgaggagggggcggcggcgccgccgccgccgcCGccgctggcattcccctcttactcccgcctcggcggcgcGggcggcaagaaggcggccgcggggaagcacgagcgccggctctccctatcggtgccgcgcccgccgccgctggtcaatatcaccatcgactgcgccggccgccgctccgtcgacgcggcggacccgtccctcctcgcgccgctcgacctcgacgccaggaagatggagaggcggctcacggggacggggctgccgtacgagaccggcgagtgggagggccgcaagtgcccgccctccacgcctttcgctgcggctccaccgctggcgcgatggaaggagcgggccagcgtctcgtcgcggaggctctcgacgcactcgtcgcgcaggctgatgagcagctcgtcctccgacgacgagtacgacgaggactcgaggaacctcttctcctccaggagcttttcctccgactcgtcggacttctacaactgcccgcgcaagaacaccagggcgcgcgcctcggtgtccggcccgtgccgcgcgccgccgccatcctcgcgccgcggcacgtcgcagagctgccggtacagcttcgagcttccgcgcggctcgacggcttcggcggcaaccgacggcgggttcgcggtggtgaagcggtcgtccgacccctacgaggacttccgcaaatcaatggaggaGATgatcgccgagggggcggcgtgcggcggcggcgacggcgacggggaGctcagcgcggagcggctgctggagacctacctcgtgctcaactcgccgcggcattaccccgcgatcctcgcggcgttcgccgacgtgcgggagacgcttttcccctgaatccgtcgaccgatcggcctgcaccgccgcaccggcgtggcggtgtgatgttcataggactaacttccatgtcaatgtcagtaagattagtagcacaagagttgagcggttgagcctgtgacttcctgtgtgtactttcatgaatgcatcgtttgtgtcatttcaccgctgattctcctttacctgctaacttctgcctaattcagactccgtatgtaaaaaaaaaaaacagactccgtcgtctctctgtgtaatggtactcttccttggttcctgataatcacgtttgagcttgtatagtacttct
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| CDS seq | atggacggcggcggctcaggcgccgggcgcaagaagctgaagcacaggctcgctgccatcctctcggtcttcaccaggcgggcaggtgacaggaagcgccgcggcgaggagggggcggcggcgccgccgccgccgcCGccgctggcattcccctcttactcccgcctcggcggcgcGggcggcaagaaggcggccgcggggaagcacgagcgccggctctccctatcggtgccgcgcccgccgccgctggtcaatatcaccatcgactgcgccggccgccgctccgtcgacgcggcggacccgtccctcctcgcgccgctcgacctcgacgccaggaagatggagaggcggctcacggggacggggctgccgtacgagaccggcgagtgggagggccgcaagtgcccgccctccacgcctttcgctgcggctccaccgctggcgcgatggaaggagcgggccagcgtctcgtcgcggaggctctcgacgcactcgtcgcgcaggctgatgagcagctcgtcctccgacgacgagtacgacgaggactcgaggaacctcttctcctccaggagcttttcctccgactcgtcggacttctacaactgcccgcgcaagaacaccagggcgcgcgcctcggtgtccggcccgtgccgcgcgccgccgccatcctcgcgccgcggcacgtcgcagagctgccggtacagcttcgagcttccgcgcggctcgacggcttcggcggcaaccgacggcgggttcgcggtggtgaagcggtcgtccgacccctacgaggacttccgcaaatcaatggaggaGATgatcgccgagggggcggcgtgcggcggcggcgacggcgacggggaGctcagcgcggagcggctgctggagacctacctcgtgctcaactcgccgcggcattaccccgcgatcctcgcggcgttcgccgacgtgcgggagacgcttttcccctga
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| Protein seq | MDGGGSGAGRKKLKHRLAAILSVFTRRAGDRKRRGEEGAAAPPPPPPLAFPSYSRLGGAGGKKAAAGKHERRLSLSVPRPPPLVNITIDCAGRRSVDAADPSLLAPLDLDARKMERRLTGTGLPYETGEWEGRKCPPSTPFAAAPPLARWKERASVSSRRLSTHSSRRLMSSSSSDDEYDEDSRNLFSSRSFSSDSSDFYNCPRKNTRARASVSGPCRAPPPSSRRGTSQSCRYSFELPRGSTASAATDGGFAVVKRSSDPYEDFRKSMEEMIAEGAACGGGDGDGELSAERLLETYLVLNSPRHYPAILAAFADVRETLFP |
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| Function | Transcription repressor OFP8 [UniProtKB/Swiss-Prot:Q3E9B4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0031770 | OsNaBo_01g0031770.01 | Chr01 | 31051146 | 31052521 | + | NAM | ||
| CDS seq | atggacggcggcggctcaggcgccgggcgcaagaagctgaagcacaggctcgctgccatcctctcggtcttcaccaggcgggcaggtgacaggaagcgccgcggcgaggagggggcggcggcgccgccgccgccgcCGccgctggcattcccctcttactcccgcctcggcggcgcGggcggcaagaaggcggccgcggggaagcacgagcgccggctctccctatcggtgccgcgcccgccgccgctggtcaatatcaccatcgactgcgccggccgccgctccgtcgacgcggcggacccgtccctcctcgcgccgctcgacctcgacgccaggaagatggagaggcggctcacggggacggggctgccgtacgagaccggcgagtgggagggccgcaagtgcccgccctccacgcctttcgctgcggctccaccgctggcgcgatggaaggagcgggccagcgtctcgtcgcggaggctctcgacgcactcgtcgcgcaggctgatgagcagctcgtcctccgacgacgagtacgacgaggactcgaggaacctcttctcctccaggagcttttcctccgactcgtcggacttctacaactgcccgcgcaagaacaccagggcgcgcgcctcggtgtccggcccgtgccgcgcgccgccgccatcctcgcgccgcggcacgtcgcagagctgccggtacagcttcgagcttccgcgcggctcgacggcttcggcggcaaccgacggcgggttcgcggtggtgaagcggtcgtccgacccctacgaggacttccgcaaatcaatggaggaGATgatcgccgagggggcggcgtgcggcggcggcgacggcgacggggaGctcagcgcggagcggctgctggagacctacctcgtgctcaactcgccgcggcattaccccgcgatcctcgcggcgttcgccgacgtgcgggagacgcttttcccctga
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| Protein seq | MDGGGSGAGRKKLKHRLAAILSVFTRRAGDRKRRGEEGAAAPPPPPPLAFPSYSRLGGAGGKKAAAGKHERRLSLSVPRPPPLVNITIDCAGRRSVDAADPSLLAPLDLDARKMERRLTGTGLPYETGEWEGRKCPPSTPFAAAPPLARWKERASVSSRRLSTHSSRRLMSSSSSDDEYDEDSRNLFSSRSFSSDSSDFYNCPRKNTRARASVSGPCRAPPPSSRRGTSQSCRYSFELPRGSTASAATDGGFAVVKRSSDPYEDFRKSMEEMIAEGAACGGGDGDGELSAERLLETYLVLNSPRHYPAILAAFADVRETLFP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0732300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g53160 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0732300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0032610 | RBH | 0.0 | 0.0 | 1.832389 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0032110 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0032590 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0031820 | RBH | 0.0 | 0.042717 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0031540 | RBH | 0.0 | 1.254755 | 0.821772 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0507400 | RBH | 1.633517 | 6.3311075 | 2.023682 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0031250 | RBH | 0.0 | 0.231287 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0499900 | RBH | 1.5941475 | 1.568994 | 8.432523 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0007710 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0031540 | RBH | 0.133334 | 2.208359 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0031720 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0031890 | RBH | 0.132551 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0031670 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G032100 | RBH | 0.0 | 0.641722 | 0.508648 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0023300 | SBH | 0.0 | 0.0 | 0.0 |
