Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0031170 | OGI:01091020 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:30640621-30645981 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggaggaggtgaggaggcatcatcacttcatcaaggtcatggtcggcgagttcgcccgccgcctcgtgagtgctctctctccctctctccctctctcctgcctacccgtaggggccccccaaacattgacatatggagtactagtatggttgcaaaaattgtggcatcttatctggcggagattgataatggatgatgcattaattaacatatacatgcatctatttttagccaaccatatgctatgctcattgataatggatgatgcatttggtgtcatatatttgtggtctttgttctaatagacgagatggatattggtaaatatataaagggggaaatagttttgtagtgtctgataacatgattataTttgtatactaactgttgtaCTCCctccgttccgtttcaggttataagacgttttgattttgatcaaagtcaaactactataagtttgactaactctgtagAAaaaaatagtaatatttataacaccaacatagtttcattaaatttataattgaataaattttcataatatatttgtcttggGTtAaaaaaattacaacttttttctaccaaattagtcaaacttaagtagtttgactttgactaaagtcaaaacatcttataccttgaaacggatgagtattaggcaagaaaaataaattgttggtggcatactaacattcatttccttgtgcatgcatgatgcatgtggtcagataatgcaattcgagcttcagattacgagcatTGAtGATATTATGCTTGTGCGACTGTGCGTATTATACAAGTACCCCTACTATATGTGAACAATTTACTGAAAGCACACAGAGTTGCATCTTGCATTTGCATTTCATCTCCTCTCAGCAATGGCTTTGACGGCCAAGGTGCTATCTCGAATCATGCAGAAACGGCTCAAAATATGCCCTAACTCCTAAAGCCTCTATATGTAGGAGATACCTCAAGGCTTCCTTATTCACATTCCAGAGGTGGACCACAGTACTTTTGATGCTTCATTACCATCATCTGCCAAAGGCACGCTTCAGAATTCAGAAGGGAAGACTTGGCCTGTTGAGCTAGAGAAACTTGATGGCCATGTATTTCTGACCACTGGATGGGCGAAGTTTGTGGAGGACAATTCTTTGAGGGAATATGAGTTCCTTCTCTTCAGATATGATGATAACATGCATTTCATGGTTTTGCCATTTGGTCTGAATGCTTGTGAGAAAGTAATTCGGTCTTCAGGAAGTCCACAAGGAAAACTTCCATGTGATATATTCTGCTGTACTAAGAGGGGTCGGGATGGTGATAGACTAACAGAGGCAGCCAACAGTCTCACGCCTAGTCATTCACAGGTAGGTTGAGATAACAAATGGATCCGTTATGAGGTAATATTATAGTGTAATCTCAAATAATTAAATCAGTTTCATACAGGTCGTTTTTTTTGCCTGTATTTTTTTAAACTATTTTTTTTGCCTATACACAGTTCATATGGAATCACTTTGTTTGAAAATAGCTTTACATTTGATTTTTCAAGTCTGTTAGAATCAATATGGAATACCAGAATACCTGACTATCTCTAAaaaacacaataaaactactgttcacttgggaatcttaaggtgcagaacaattatttcaagtaactttaggaggtttgacgttttgaaataactattcctaacttgattttttccgtttaataagttccaccttgggaacaggcaggatatgaattatAaaattgttggtttgtaccttagtagtgatgttgtctccttgaactgAaaattttatacaacttttaggtattgcaaaggacaactcaaggccatgagcttatttcaccacaaagtttccctgatcaacatgaagtatgcggctcgaaagatGggttagatgaacacttATCactgaacgggccaatggaggatgataaagctaatgcgatagctgaagtaatgagcatattggatgttgacaaagtgacagttgaattattctgtgcaatgcttgttttctataaatggaatgtggatgcggtggcagaagactttgacatatgtaggggcaaaccgcaaattcagaacctgtttctgaagcacaaacttcattttcaatgtaagtttttatcgcctcgtcttctgtcattcttgcactgctagcattgacaacacatccttctgtatttcagttgatattgtaaagaggaaactacgaaagttcttccctccaGatgattattattcttctccaATacttgagagtaggaagtgcagccttgaggaacctaagttgtctaaccaaccactgcaatgtgacttgacaacagagaagtgtaggctagttgatgagcatgatttatgtaatttttctcagAaaaagagaaggaagcgaggttcattttgtagtcctgaaactccacgaagatcaccaagactggcacgccagaataattctcatgacagtgcagagaatacattgaaagaaagatccgaagagcgacaaccatcaccagacagcATGatagatcaGgcagagagcagatcagagcaagcatgtttatgccacgataaaacagacagtggtattcttaggctcctcttgttagaagtatTGtgtaatgattgatattgtagtttGTAgttaaatctgtttgtttcatttcaggttcattatttcaagactctaagaaagttaaaccagcacatggtgaggtggatttatgtgaagagcctcaacataatcaaggaGaaaatgAagggaatttagatcaagtcAATaataaagaaactgatgaagagcaaatagaaagaaatgcggtggagacctctgagtcattcacaaggagaggttgcatcaagtcatcgccagccagttgtgaggtgccagcatgtttgagaatAaacgagttatctttgacatggaagcccgctgaacatgtcaaccctcttgagaaagttttacttgatatccaacgagacaatttcatgaagaccatctcacatgttcagggaatcatccgaaatcatccttcagacctactgactgctgatgtaattacagttgttgtgcagaaagaaatttttaaatggaattgttgtcttaaggatagggatgctcaaaggatagtgaatgcgttactggaacatgctagaaaaatcaaggagatgcacaattttaactcggagatgcggaaggaagagttttctgcaaagctgaaggttcatttgaagtggcagctcaaagaagtaGaaactatatatacctcattggagttagattacaagaaagcaacgagtgatgataatattgctttctcaatgctgcatgataagaagaagaaattgcacAatcttcaggatgagataactggcttgcagcagtcgttggagatgaagaaggatgaaatgcagaaattggctcatcaagttgctgagcatgagagtgtatttcagaagtctttaatggaaagattaaggattaaggaagttatgaagggttatgagcaaactcTtgctgaagttaaagttcagctaacttccactgaagttggatcaattgatatagaggcattggtgaaggtagagatggataacatgaccaaggaaattgaactgtctaaggaaagcctcctaaacatcactttCcattaatgaccggaatggtgatgtcatgatcatgttcggttgcaagtagttcttctattgacggcattctacattatggtaatccattttgttatcttgaaagttttaacccataatatgtaaagtaacatagcagaagcagAaatacaatagggccattaatGgacatattggtttgttttgcagAaactatgctatctgataggtgagtccagttatgtaCtagtttgcatttattcatatcttagacctcttgaaagacaagttctaGgtaagatacatcttctgatgacagaagaagaagaaattaccccaaaacttgttaagtggcactgatattatgctatattaagttgtcatgtcacttatggcagtactttacattatacaagcagtttatttctgaagagccgctaggttgtagaatgctcctttcttactcatgaGgtgtggataagtaccacgttccactaccttaccCTctcctaagaaggcaatcgaatctacattcttgattgtgttcagtcgatgtgccaccacaattgtagtccttcctgacatgattctatcaaGggcttcctgcacaacttgctctgactgtgcatcgagagcacttgttgcttcgtcaagtagaagtattgctggattccggattaTtgccctcgcaattgcaattcgttgcttttgccctcctgatagttgtaatccatgctcacCAcagtcagtatgatatccgtcctttagagatctgaaaaagaatatactttagtacattcataactggaattcatttaacaggaacattgctgcactgtatatttggaaaggAaaacttgaagaacttacgatatgaattcatgtgcatttgcagctttagcagcttccacgatctcgtcttcatcagcttctggtttaccaaaagcAatgttgtccctgacactaccagAaaatattgcaggctcctggctaacaagggctgtaaatcctcgataccaaaggatatccatctccctcacatccataccatcaacctttacagcccctctgtcaacatcatagaacctctggatcaaaccaatgatggtagaTtttccacagccgcttctcccaacaagaccaatacttgttcctgctttcacatccaagctAaaatcctgcaggatAaggcattgtggtcttgtcggatatgcaaaatctacccttttgaactctatccttccttgtattttgttcttctgattgtccttttccacctgcaatttagctgtgttattttattcttatacaatctagcacaacaaggtcattatttagctaggctgccgatctcttttctaatattttatacaatgctcatgaaagtggtcatgaatatatgatacctgtgaattttgtggagagatagatttcctgtctagcacctcaaacactgaagcaactgcatttgctcccttagccaggtcggatgtcatgctgccagcatcagcaatcaactttcctgtactcaccaagacaaaaaatgttttgaagacatcacctgcggagatctccccagaTtgtgccaatttcccaccataccaGaagtcaagagcccatgacaagaatgaaaggcaaggtgacagtccagtggtgatcccggccaCccatgatttcttccttgctctcttcagtggttcctcttgtgtatgctcaaagagctga
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| CDS seq | atggaggaggtgaggaggcatcatcacttcatcaaggtcatggtcggcgagttcgcccgccgcctcGAGATACCTCAAGGCTTCCTTATTCACATTCCAGAGGTGGACCACAGTACTTTTGATGCTTCATTACCATCATCTGCCAAAGGCACGCTTCAGAATTCAGAAGGGAAGACTTGGCCTGTTGAGCTAGAGAAACTTGATGGCCATGTATTTCTGACCACTGGATGGGCGAAGTTTGTGGAGGACAATTCTTTGAGGGAATATGAGTTCCTTCTCTTCAGATATGATGATAACATGCATTTCATGGTTTTGCCATTTGGTCTGAATGCTTGTGAGAAAGTAATTCGGTCTTCAGGAAGTCCACAAGGAAAACTTCCATGTGATATATTCTGCTGTACTAAGAGGGGTCGGGATGGTGATAGACTAACAGAGGCAGCCAACAGTCTCACGCCTAGTCATTCACAGgtattgcaaaggacaactcaaggccatgagcttatttcaccacaaagtttccctgatcaacatgaagtatgcggctcgaaagatGggttagatgaacacttATCactgaacgggccaatggaggatgataaagctaatgcgatagctgaagtaatgagcatattggatgttgacaaagtgacagttgaattattctgtgcaatgcttgttttctataaatggaatgtggatgcggtggcagaagactttgacatatgtaggggcaaaccgcaaattcagaacctgtttctgaagcacaaacttcattttcaatttgatattgtaaagaggaaactacgaaagttcttccctccaGatgattattattcttctccaATacttgagagtaggaagtgcagccttgaggaacctaagttgtctaaccaaccactgcaatgtgacttgacaacagagaagtgtaggctagttgatgagcatgatttatgtaatttttctcagAaaaagagaaggaagcgaggttcattttgtagtcctgaaactccacgaagatcaccaagactggcacgccagaataattctcatgacagtgcagagaatacattgaaagaaagatccgaagagcgacaaccatcaccagacagcATGatagatcaGgcagagagcagatcagagcaagcatgtttatgccacgataaaacagacagtggtattcttaggctcctcttgagaggttgcatcaagtcatcgccagccagttgtgaggtgccagcatgtttgagaatAaacgagttatctttgacatggaagcccgctgaacatgtcaaccctcttgagaaagttttacttgatatccaacgagacaatttcatgaagaccatctcacatgttcagggaatcatccgaaatcatccttcagacctactgactgctgatgtaattacagttgttgtgcagaaagaaatttttaaatggaattgttgtcttaaggatagggatgctcaaaggatagtgaatgcgttactggaacatgctagaaaaatcaaggagatgcacaattttaactcggagatgcggaaggaagagttttctgcaaagctgaaggttcatttgaagtggcagctcaaagaagtaGaaactatatatacctcattggagttagattacaagaaagcaacgagtgatgataatattgctttctcaatgctgcatgataagaagaagaaattgcacAatcttcaggatgagataactggcttgcagcagtcgttggagatgaagaaggatgaaatgcagaaattggctcatcaagttgctgagcatgagagtgtatttcagaagtctttaatggaaagattaaggattaaggaagttatgaagggttatgagcaaactcTtgctgaagttaaagttcagctaacttccactgaagttggatcaattgatatagaggcattggtgaaggtagagatggataacatgaccaaggaaattgaactgtctaaggaaagcctcctaaacatcactttCcattaa
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| Protein seq | MEEVRRHHHFIKVMVGEFARRLEIPQGFLIHIPEVDHSTFDASLPSSAKGTLQNSEGKTWPVELEKLDGHVFLTTGWAKFVEDNSLREYEFLLFRYDDNMHFMVLPFGLNACEKVIRSSGSPQGKLPCDIFCCTKRGRDGDRLTEAANSLTPSHSQVLQRTTQGHELISPQSFPDQHEVCGSKDGLDEHLSLNGPMEDDKANAIAEVMSILDVDKVTVELFCAMLVFYKWNVDAVAEDFDICRGKPQIQNLFLKHKLHFQFDIVKRKLRKFFPPDDYYSSPILESRKCSLEEPKLSNQPLQCDLTTEKCRLVDEHDLCNFSQKKRRKRGSFCSPETPRRSPRLARQNNSHDSAENTLKERSEERQPSPDSMIDQAESRSEQACLCHDKTDSGILRLLLRGCIKSSPASCEVPACLRINELSLTWKPAEHVNPLEKVLLDIQRDNFMKTISHVQGIIRNHPSDLLTADVITVVVQKEIFKWNCCLKDRDAQRIVNALLEHARKIKEMHNFNSEMRKEEFSAKLKVHLKWQLKEVETIYTSLELDYKKATSDDNIAFSMLHDKKKKLHNLQDEITGLQQSLEMKKDEMQKLAHQVAEHESVFQKSLMERLRIKEVMKGYEQTLAEVKVQLTSTEVGSIDIEALVKVEMDNMTKEIELSKESLLNITFH |
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| Function | B3 domain-containing protein Os03g0120900 [UniProtKB/Swiss-Prot:Q5JNA1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0031170 | OsNaBo_01g0031170.02 | Chr01 | 30644295 | 30645981 | + | NAM | ||
| CDS seq | atggtgattcgatgtgccaccacaattgtagtccttcctgacatgattctatcaaGggcttcctgcacaacttgctctgactgtgcatcgagagcacttgttgcttcgtcaagtagaagtattgctggattccggattaTtgccctcgcaattgcaattcgttgcttttgccctcctgatagttgtaatccatgctcacCAcagtcaatagatttcctgtctagcacctcaaacactgaagcaactgcatttgctcccttagccaggtcggatgtcatgctgccagcatcagcaatcaactttcctgtactcaccaagacaaaaaatgttttgaagacatcacctgcggagatctccccagaTtgtgccaatttcccaccataccaGaagtcaagagcccatgacaagaatgaaaggcaaggtgacagtccagtggtgatcccggccaCccatgatttcttccttgctctcttcagtggttcctcttgtgtatgctcaaagagctga
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| Protein seq | MVIRCATTIVVLPDMILSRASCTTCSDCASRALVASSSRSIAGFRIIALAIAIRCFCPPDSCNPCSPQSIDFLSSTSNTEATAFAPLARSDVMLPASAINFPVLTKTKNVLKTSPAEISPDCANFPPYQKSRAHDKNERQGDSPVVIPATHDFFLALFSGSSCVCSKS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0031170 | OsNaBo_01g0031170.01 | Chr01 | 30640621 | 30644286 | + | NAM | ||
| CDS seq | atggaggaggtgaggaggcatcatcacttcatcaaggtcatggtcggcgagttcgcccgccgcctcGAGATACCTCAAGGCTTCCTTATTCACATTCCAGAGGTGGACCACAGTACTTTTGATGCTTCATTACCATCATCTGCCAAAGGCACGCTTCAGAATTCAGAAGGGAAGACTTGGCCTGTTGAGCTAGAGAAACTTGATGGCCATGTATTTCTGACCACTGGATGGGCGAAGTTTGTGGAGGACAATTCTTTGAGGGAATATGAGTTCCTTCTCTTCAGATATGATGATAACATGCATTTCATGGTTTTGCCATTTGGTCTGAATGCTTGTGAGAAAGTAATTCGGTCTTCAGGAAGTCCACAAGGAAAACTTCCATGTGATATATTCTGCTGTACTAAGAGGGGTCGGGATGGTGATAGACTAACAGAGGCAGCCAACAGTCTCACGCCTAGTCATTCACAGgtattgcaaaggacaactcaaggccatgagcttatttcaccacaaagtttccctgatcaacatgaagtatgcggctcgaaagatGggttagatgaacacttATCactgaacgggccaatggaggatgataaagctaatgcgatagctgaagtaatgagcatattggatgttgacaaagtgacagttgaattattctgtgcaatgcttgttttctataaatggaatgtggatgcggtggcagaagactttgacatatgtaggggcaaaccgcaaattcagaacctgtttctgaagcacaaacttcattttcaatttgatattgtaaagaggaaactacgaaagttcttccctccaGatgattattattcttctccaATacttgagagtaggaagtgcagccttgaggaacctaagttgtctaaccaaccactgcaatgtgacttgacaacagagaagtgtaggctagttgatgagcatgatttatgtaatttttctcagAaaaagagaaggaagcgaggttcattttgtagtcctgaaactccacgaagatcaccaagactggcacgccagaataattctcatgacagtgcagagaatacattgaaagaaagatccgaagagcgacaaccatcaccagacagcATGatagatcaGgcagagagcagatcagagcaagcatgtttatgccacgataaaacagacagtggtattcttaggctcctcttgagaggttgcatcaagtcatcgccagccagttgtgaggtgccagcatgtttgagaatAaacgagttatctttgacatggaagcccgctgaacatgtcaaccctcttgagaaagttttacttgatatccaacgagacaatttcatgaagaccatctcacatgttcagggaatcatccgaaatcatccttcagacctactgactgctgatgtaattacagttgttgtgcagaaagaaatttttaaatggaattgttgtcttaaggatagggatgctcaaaggatagtgaatgcgttactggaacatgctagaaaaatcaaggagatgcacaattttaactcggagatgcggaaggaagagttttctgcaaagctgaaggttcatttgaagtggcagctcaaagaagtaGaaactatatatacctcattggagttagattacaagaaagcaacgagtgatgataatattgctttctcaatgctgcatgataagaagaagaaattgcacAatcttcaggatgagataactggcttgcagcagtcgttggagatgaagaaggatgaaatgcagaaattggctcatcaagttgctgagcatgagagtgtatttcagaagtctttaatggaaagattaaggattaaggaagttatgaagggttatgagcaaactcTtgctgaagttaaagttcagctaacttccactgaagttggatcaattgatatagaggcattggtgaaggtagagatggataacatgaccaaggaaattgaactgtctaaggaaagcctcctaaacatcactttCcattaa
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| Protein seq | MEEVRRHHHFIKVMVGEFARRLEIPQGFLIHIPEVDHSTFDASLPSSAKGTLQNSEGKTWPVELEKLDGHVFLTTGWAKFVEDNSLREYEFLLFRYDDNMHFMVLPFGLNACEKVIRSSGSPQGKLPCDIFCCTKRGRDGDRLTEAANSLTPSHSQVLQRTTQGHELISPQSFPDQHEVCGSKDGLDEHLSLNGPMEDDKANAIAEVMSILDVDKVTVELFCAMLVFYKWNVDAVAEDFDICRGKPQIQNLFLKHKLHFQFDIVKRKLRKFFPPDDYYSSPILESRKCSLEEPKLSNQPLQCDLTTEKCRLVDEHDLCNFSQKKRRKRGSFCSPETPRRSPRLARQNNSHDSAENTLKERSEERQPSPDSMIDQAESRSEQACLCHDKTDSGILRLLLRGCIKSSPASCEVPACLRINELSLTWKPAEHVNPLEKVLLDIQRDNFMKTISHVQGIIRNHPSDLLTADVITVVVQKEIFKWNCCLKDRDAQRIVNALLEHARKIKEMHNFNSEMRKEEFSAKLKVHLKWQLKEVETIYTSLELDYKKATSDDNIAFSMLHDKKKKLHNLQDEITGLQQSLEMKKDEMQKLAHQVAEHESVFQKSLMERLRIKEVMKGYEQTLAEVKVQLTSTEVGSIDIEALVKVEMDNMTKEIELSKESLLNITFH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 1.623791 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0723700 | RBH | 0.087538 | 0.253824 | 1.711629 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g52540 | RBH | 0.051984 | 0.149915 | 0.386918 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0723700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0032060 | RBH | 0.000000 | 0.000000 | 0.418554 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0031580 | RBH | 0.057867 | 0.000000 | 0.716664 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0032030 | RBH | 0.189705 | 1.000940 | 3.324739 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0031240 | RBH | 0.000000 | 0.026570 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0030920 | RBH | 1.053169 | 0.000000 | 4.121243 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0500900 | SBH | 0.615732 | 1.605217 | 0.1001585 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0030650 | RBH | 0.000000 | 0.000000 | 0.454874 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0493500 | RBH | 2.3495675 | 0.682979 | 5.7284615 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0030890 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0030920 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0031120 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0031310 | RBH | 0.073227 | 0.000000 | 0.033386 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0031070 | RBH | 0.000000 | 0.437801 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G031520 | RBH | 0.000000 | 0.291894 | 0.173041 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0031150 | RBH | 0.0 | 0.000000 | 0.0 |
