Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0029630 | OGI:01087510 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:29476211-29477843 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcaccagcaaacgttctctacgctgcattgcttgtgccaatggtgctgtacctagccgtcacccggcggcgcagccgccgcttgccacccggaccggcggggcttcccctcgttggcagcctccctttcatcgacccaaacttgcacacctacttcgcgggcctcgccgccaagcacgggcccatcctctccatccgcctcggctccaaggtggacatcgtcgtcacttccccggagctagcccgcgaggtgctccgtgaccaggactccgtcttcgccaatcgggtcatgccggacgccggcaacgcggtctccttcggcggcgtgcagaacatcgtgggcaaccctgtcgggcccatgtggcgcctgctccgccgcctctgcgttcacgagatgctgagcccgtcggggctcgccaacgtgcacgatctccgccggcgcgagttcaggtcgaccctacgttacctccacacgaagtccggcgagcctgtcgatctcggcgcacagatgttcctcaacaccatgaacgtgatcacgagcgccatgtggggaggcaccatcGggagcgagagcgagagggcggcagtggggagcgagttcaggggcctcgtcgcggaggtcaccgagcttctcggcacgcccaacgtctcggacttcttcccggcgctggcgccgtttgacctgcagggcatccggggcaagatggagcggttcaggtcacggttcgacctgatgttcgccaagatcatacagcagcggatgaaagcccagcaggacggcggcgagacggcgacggacttcttggaatgcatgctcaagatggagaaggaaggcggcgacggtaaagcccccttcaccatggacaacgtcaaggccctcctcttggtaattactcgttcctaacataccgttgagcaaagttcctagtacagcaagcctaaattaaaatgcttccactaatcaccatgtacgtcgtcaacaggacatggtggtcggcgggacggagaccacgtcgaacaccgtggaatgggccatggcggagatgctgcagaaccctcaggtgctaaagaaggcgcagcaagagctcgacagcgtcgtgggccgggacgaagtggtggaggagtggcacctcccgcagctccactatctccgcatggtgatcaaggagacgctcaggctgcacccggcgctgcccctgatggtgccgcacagcccgagcgccgcctcgacggtcagtggctaccacgttcccgagggcagccgcgtgttcgtcaacgtctgggcgatccagaggaatcctctggtttggaacgagccactcgagttcaaccctgagaggtttgctggggacgaaggccacaagtgggacttCAccggtagccagttcgactacttcccgttcgggtccggtcggaggatctgtgctgggatagccatggcggagaagatgacggcctactcggtcgccatgctgctgcaggcgttcgactggaagctgccgcagggcgttcagcctgacctgtccgagaagtttgggatcgtgatgaagaaggccgcgccgctggtggcaataccgacaccaaggttatctaagcctgagctgtactattagtgaagccagcttttacct
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| CDS seq | atggcaccagcaaacgttctctacgctgcattgcttgtgccaatggtgctgtacctagccgtcacccggcggcgcagccgccgcttgccacccggaccggcggggcttcccctcgttggcagcctccctttcatcgacccaaacttgcacacctacttcgcgggcctcgccgccaagcacgggcccatcctctccatccgcctcggctccaaggtggacatcgtcgtcacttccccggagctagcccgcgaggtgctccgtgaccaggactccgtcttcgccaatcgggtcatgccggacgccggcaacgcggtctccttcggcggcgtgcagaacatcgtgggcaaccctgtcgggcccatgtggcgcctgctccgccgcctctgcgttcacgagatgctgagcccgtcggggctcgccaacgtgcacgatctccgccggcgcgagttcaggtcgaccctacgttacctccacacgaagtccggcgagcctgtcgatctcggcgcacagatgttcctcaacaccatgaacgtgatcacgagcgccatgtggggaggcaccatcGggagcgagagcgagagggcggcagtggggagcgagttcaggggcctcgtcgcggaggtcaccgagcttctcggcacgcccaacgtctcggacttcttcccggcgctggcgccgtttgacctgcagggcatccggggcaagatggagcggttcaggtcacggttcgacctgatgttcgccaagatcatacagcagcggatgaaagcccagcaggacggcggcgagacggcgacggacttcttggaatgcatgctcaagatggagaaggaaggcggcgacggtaaagcccccttcaccatggacaacgtcaaggccctcctcttggacatggtggtcggcgggacggagaccacgtcgaacaccgtggaatgggccatggcggagatgctgcagaaccctcaggtgctaaagaaggcgcagcaagagctcgacagcgtcgtgggccgggacgaagtggtggaggagtggcacctcccgcagctccactatctccgcatggtgatcaaggagacgctcaggctgcacccggcgctgcccctgatggtgccgcacagcccgagcgccgcctcgacggtcagtggctaccacgttcccgagggcagccgcgtgttcgtcaacgtctgggcgatccagaggaatcctctggtttggaacgagccactcgagttcaaccctgagaggtttgctggggacgaaggccacaagtgggacttCAccggtagccagttcgactacttcccgttcgggtccggtcggaggatctgtgctgggatagccatggcggagaagatgacggcctactcggtcgccatgctgctgcaggcgttcgactggaagctgccgcagggcgttcagcctgacctgtccgagaagtttgggatcgtgatgaagaaggccgcgccgctggtggcaataccgacaccaaggttatctaagcctgagctgtactattag
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| Protein seq | MAPANVLYAALLVPMVLYLAVTRRRSRRLPPGPAGLPLVGSLPFIDPNLHTYFAGLAAKHGPILSIRLGSKVDIVVTSPELAREVLRDQDSVFANRVMPDAGNAVSFGGVQNIVGNPVGPMWRLLRRLCVHEMLSPSGLANVHDLRRREFRSTLRYLHTKSGEPVDLGAQMFLNTMNVITSAMWGGTIGSESERAAVGSEFRGLVAEVTELLGTPNVSDFFPALAPFDLQGIRGKMERFRSRFDLMFAKIIQQRMKAQQDGGETATDFLECMLKMEKEGGDGKAPFTMDNVKALLLDMVVGGTETTSNTVEWAMAEMLQNPQVLKKAQQELDSVVGRDEVVEEWHLPQLHYLRMVIKETLRLHPALPLMVPHSPSAASTVSGYHVPEGSRVFVNVWAIQRNPLVWNEPLEFNPERFAGDEGHKWDFTGSQFDYFPFGSGRRICAGIAMAEKMTAYSVAMLLQAFDWKLPQGVQPDLSEKFGIVMKKAAPLVAIPTPRLSKPELYY |
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| Function | Flavonoid 3',5'-hydroxylase CYP75B138 [UniProtKB/Swiss-Prot:A0A4D6Q414] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0029630 | OsNaBo_01g0029630.01 | Chr01 | 29476211 | 29477843 | + | NAM | ||
| CDS seq | atggcaccagcaaacgttctctacgctgcattgcttgtgccaatggtgctgtacctagccgtcacccggcggcgcagccgccgcttgccacccggaccggcggggcttcccctcgttggcagcctccctttcatcgacccaaacttgcacacctacttcgcgggcctcgccgccaagcacgggcccatcctctccatccgcctcggctccaaggtggacatcgtcgtcacttccccggagctagcccgcgaggtgctccgtgaccaggactccgtcttcgccaatcgggtcatgccggacgccggcaacgcggtctccttcggcggcgtgcagaacatcgtgggcaaccctgtcgggcccatgtggcgcctgctccgccgcctctgcgttcacgagatgctgagcccgtcggggctcgccaacgtgcacgatctccgccggcgcgagttcaggtcgaccctacgttacctccacacgaagtccggcgagcctgtcgatctcggcgcacagatgttcctcaacaccatgaacgtgatcacgagcgccatgtggggaggcaccatcGggagcgagagcgagagggcggcagtggggagcgagttcaggggcctcgtcgcggaggtcaccgagcttctcggcacgcccaacgtctcggacttcttcccggcgctggcgccgtttgacctgcagggcatccggggcaagatggagcggttcaggtcacggttcgacctgatgttcgccaagatcatacagcagcggatgaaagcccagcaggacggcggcgagacggcgacggacttcttggaatgcatgctcaagatggagaaggaaggcggcgacggtaaagcccccttcaccatggacaacgtcaaggccctcctcttggacatggtggtcggcgggacggagaccacgtcgaacaccgtggaatgggccatggcggagatgctgcagaaccctcaggtgctaaagaaggcgcagcaagagctcgacagcgtcgtgggccgggacgaagtggtggaggagtggcacctcccgcagctccactatctccgcatggtgatcaaggagacgctcaggctgcacccggcgctgcccctgatggtgccgcacagcccgagcgccgcctcgacggtcagtggctaccacgttcccgagggcagccgcgtgttcgtcaacgtctgggcgatccagaggaatcctctggtttggaacgagccactcgagttcaaccctgagaggtttgctggggacgaaggccacaagtgggacttCAccggtagccagttcgactacttcccgttcgggtccggtcggaggatctgtgctgggatagccatggcggagaagatgacggcctactcggtcgccatgctgctgcaggcgttcgactggaagctgccgcagggcgttcagcctgacctgtccgagaagtttgggatcgtgatgaagaaggccgcgccgctggtggcaataccgacaccaaggttatctaagcctgagctgtactattag
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| Protein seq | MAPANVLYAALLVPMVLYLAVTRRRSRRLPPGPAGLPLVGSLPFIDPNLHTYFAGLAAKHGPILSIRLGSKVDIVVTSPELAREVLRDQDSVFANRVMPDAGNAVSFGGVQNIVGNPVGPMWRLLRRLCVHEMLSPSGLANVHDLRRREFRSTLRYLHTKSGEPVDLGAQMFLNTMNVITSAMWGGTIGSESERAAVGSEFRGLVAEVTELLGTPNVSDFFPALAPFDLQGIRGKMERFRSRFDLMFAKIIQQRMKAQQDGGETATDFLECMLKMEKEGGDGKAPFTMDNVKALLLDMVVGGTETTSNTVEWAMAEMLQNPQVLKKAQQELDSVVGRDEVVEEWHLPQLHYLRMVIKETLRLHPALPLMVPHSPSAASTVSGYHVPEGSRVFVNVWAIQRNPLVWNEPLEFNPERFAGDEGHKWDFTGSQFDYFPFGSGRRICAGIAMAEKMTAYSVAMLLQAFDWKLPQGVQPDLSEKFGIVMKKAAPLVAIPTPRLSKPELYY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.511013 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0700500 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g50490 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0700500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0030440 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0031840 | SBH | 0.046196 | 0.643570 | 0.213658 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0030410 | RBH | 0.0 | 0.0 | 0.524642 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0029680 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0029350 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0481500 | RBH | 0 | 0.01309 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0029080 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0472000 | SBH | 0.092391 | 0.1323785 | 0.0360455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0029330 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0029270 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0029530 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0029700 | RBH | 0.0 | 0.0 | 0.149876 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0029510 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G029940 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0029640 | RBH | 0.0 | 0.000000 | 0.0 |
