Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0027390 | OGI:01082810 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:27622560-27629302 | ||||||||
| Gene Symbol | WJUMK1, OsMPK20-4, MPK20-4, OsWJUMK, OsWJUMK1, WJUMK, MAPK8, OsMPK8, MPK8, OsMAPK20-4, MAPK20-4, OsMPKG1, MPKG1 | ||||||||||
| DNA seq | accgcgtccgcgaccccgaccgaTttttgcagtggttcgctcgcgacgccaacacgaactcccgaaggcgaggcggctttgcacgcacgcacgcgcggcctacctcctcggcgcgagttgctcagtcgcagggggggaggtgggagcggggcggggcggggcgggcgtcccggtcggggattgcgctggttcgatccccccgcgcgtgtgggggtgtgggtgcgtgggatcgatctctccctctcgctcgctcgctcgctcgccctagcacctcgcgggcggggcgtcgcatgcggcggcgcggcgaggcgaggcaaatgcgggtggattcgtcgctggcggtggaggagaggtgagggggcggcggcggcggcggcgatggcgatgcagacgatgcagacggagcagcagcagcagcagcggaggaaggtgagaggaggtggcaATTCattttttgttgcgcggtgtttctcgccgggggtggttgggtttttggtggagggtggtggtctcatggtcatgggtggttggcgtttggagatcggtttggtcgtcccgcgggtcgagacgatcttgagTTatatggagtcgggggattttgtgcAaaagaacgatttgtttcccttcctttctttctcgtggagcttcggattcggatgcgtacgagcgtagtaagggtttgTtcttgccgttgttttcctccgcttttttgctcgacttttatctgcggatgactccgtatgttggattgtggtgaatttcagtggattttgagctctgcagtcgctgtagttctcgattctcatgttccatttgttcgcaaaagagattttttcccccctccccttcgcctttctctggatcggaaattatccgaattgtcagaaggttctctattcgatttaaccgtggatgccttcttgataatatctgaaaccttctggtgctgggcgacgtctgctttttgtgccctcgaaaggaaatgacatcctttgacaacttttcccgagtcagtcgaatactcattgcgccttgatgaataactagtactccaattcagagaattttcccaccccacttctaatccgagataacactccaaggagagaagattaattcagatgctacttagaagcatcacaaatgcggtataagattcgctgagtagatatgtttatcctaagccagctctgcggcctttcttaccttcttggttttttttacttgcaagaaaagaatagccaatcattttaattgtcccagtggattatctaatcaatatattccatgcccactttggaggcatattgatcgagatggttttatgccccagaggccaagagcacTtcttaagagtcattatttggcTtttttttagtcttgttcggtcttaggctttgattgtttcgttttgctcactgctggagagtggagactaaggagtctttgcatcagaagggcaggtgtagctactgtcttttctgatacatcagctactagagtccagttgctcgttctaggatctatctgagtttgttgaactaggatctgtctgaatttgttgtacgcagattaaccatctgctgtttcagtggtctgttagcaagtactcttctatgcattcaaagacattagctttgaattatatactccctcttttttaaacaagctatctccagcatagtgttaactcaatttattgacttatgttcagggttcgccagagatggatttcttcagcgaatatggtgatgctaacagatacaaaatacaggaagtcattggcaaaggaagctatggtgtagtttgttcagctattgaccaacatactggcgacaaggttgcaatcaagaaaatacacaatatctttgagcacttatctgatgctgcccgaatcctccgtgagatcAaattactccggctattacggcatcctgatatagttgagatcaagcatataatgctacctccatcaaggagggacttcaaggacatatatgttgtctttgagctgatggataccgatctCCAccaagtcatcaaggcaaatgatgacttaaccaaagaacatcatcagttctttctttatcagatgcttcgtgctttgaaataTATtcatactggtatgcttccttttagaaactgaggtctgagctagcacagcgtttattgatgactgtaatatttgtttagtgttgagggataatttattctctgaaatgttgggtaaagtttattcacatttttttgggttctttgttatgcttcatgaagagcataaacaatcttgtagtgtgctcgcacatgaatttggcacagtgctagcccaataaataagtccactataaataaaggaaattgtcattcccacatcatttgcctttagttgcttattctgttcattacattatttttgccctgtggagattctgtttgttgccatcctcttatttcTttaaagtatttcccactattttgcatcttttattgattactagatactatacttgcactttctttgtctatctagaaattgactaattgtacaacatgtcatcattactgttttctgctattcactgttaagccattaacattatcaccactgaaaatccttctcgtcgagttttaaactgcatgctcatttagatctttcagaatggggagatgcacttggtttacatgtattgcttatcctaaccatcagtttatgtactgcagctaatgtctatcatcgtgatttgaagccaaagaacatattggcaaacgctaactgtaaactcAaaatatgcgatttcggtctagcacgagtggcatttaatgacactcctacaacggtattctggacggtgtgtgacattgtacattcATatattgcattatctgcaatagtacatgcatagttttgctacgtaagttttattttctatttcataattttctttctttgttttttgcaggattatgttgctactagatggtatagggctcctgagttgtgtggttctttctttactaaggtaattaatctgcagttctcatgtgttgtttgttggaatatttgcttgggctacttccccagaagccctataacatgatttgcttggtctacttgatggtatattgctgaattataTtttctgttaaaattcattgtcacatccctatacatgattttgctatggttttctgcatgctcttctgactgtacacattttatcatagagaaatgtaatatttttatatcataaagacataatatttcaatttaactagtgtaatacattgagtgttatgccaatagaatgataatggcagctattctagagcctagtattcatggcCAcacacactatactggtggtatgccaacatgctggtatacaatagttgtcacttgtcaatctgtggcccttccttgatatgcagccatttatgtcagtcatagcaactactgttgatgctaagtggacttcctaatatttagcaatcacaattcgaattaactagtgttacatatcgtcataaatcatacttcacattttgtggcctctttctcattcctccaatccttcatttggatctttgacaacgatcgtgtgaCtatattctgttttatgatgtctggctcaattttactttatcttgattaatcgggtgacttgattccaagctccctacagatatgcacatgttactgtttagaaacttcatatgcggtcattttttattttcctgaaagattaatgtctatgtgttaaatttatcctgttgtacataaccctttttatgcacaagtacccccatagctatatgtgattttacatcaggccattcatcccctttgattccgatttggctttttaccagctggtataacagggatcattccttccaaattgtcttgttcagaagctgcattcataggcggcatttgctacctttttagtaggtattgccttcattgatcatcatagatagttttattagtatTAtttggttaggtttgaaaagtacagcatttacagtaacctgagagtttattcgtctgtttgacatctaggcgaagtgataggattaatgtagttagctgatattttcttcacttttacgccaactgttcaactaatatctgctcctctgtaaatttcaatggatgctaaatcgattgtactgtgcagtattcaccagctattgacatatggagtattggctgcatttttgctgagattttaactgggaagcctttgtttcctggtaaaaatgtggttcaccagttggatctgatgactgatctcttgggtactccatcaatggatactgttacaagggtatgctttgcctttcatcaatgactaatgctccaaagtgaactatccataataaatgccaggtatcatgttgtaactgcagattcggaatgagaaagcaaggaggtacttgagcagtatgaggaaaaagcagccagtacctttttctgagagattcccaaaagcagatcctgctgcactcaaacttctgcagaggcttttagcattcgacccgaaggatagaccaactgccgaagaggttagtttttattaatgaatgttgaattaaaacttctgtagtttgtacttccatgtgatggctgcacctggtgtcatttggtgctgaaatcattctaatgataTtcattttcattgatttacatatcaggcgttggctgatccatattttaaaggccttgcgaaagcAGagagagaaccatcatgccagccaataacaaagatggagtttgagtttgagcggagaaaggtgactaaagaggatgtgaaggaacttatattccgtgaaatactggagtatcatcctcaacttcttaaggattacatgaatggaaccgaaaaaacaaacttcctatatcctaggttcgtcccatggattctcttccatcagtcatgctccccacctcctttctttttgtttattcccatcttctgcaccccattggttataactaatacattttcggttgcacctaattgttattacacagtgcccttgacaactttcggagacaatttgctaacctggaagaaaatggagggaagaatggagatgctgttccatcagacaggaaacatgtttcgctcccaaggtggctaaaaccgttttaaccatcaatggttttcttcccattgaaagtatatttttgttgattatgatgccaagtttgcttctgttaagaaaattgcatcaaatcaaacagatagatcgtacttgcatcattataaaactttgtttcatgattttatggtaccataaaacctctgtacacatcagaaagtgggtgatttgaggtgatatcaataacagagaccaccgttggaatattggtgctgacctttaatttctaatttgcaggactactacagttcattctgctccaattcctcccaaagatcatcaaaatataacttcccaagtaccccaaaggattccaggtaatagtttctcctaaataaatttatcaagctcatttcttcagaggattccatctgatatattttcttctgataatttctcaggtagaacaggacgaggggcttgccctgtaataccatttgagaatttgagtgcaatgagcccatacaatcaacgaagggtggtaaggaatccagtgcttcctccagccaccaccaacctatcagcatatgcctaccaccgtaaatcggatagctcagaaagagagctccagcaggagcttgagaaagatcgcatgcggtaccagccatcagagcatttcatggatgctaaggtggtgtcacatatgtcccatgatttgagagcttcctcttactacgtttcaaaggcgaaatctgatgtagcagacagagctgccttacaatccaacatgatgcagggaattggcccttttaatggcattgctgcagttggaggtaactacaataaagtcagtactgttcagtatggggtctcgaggatgtattagggtgcaatggccacttcaaaaatgctccgctgagctgattaataacatgaaagaatccaagtacccaagtgccttatcagccaaagattcagacaaagaatacaggaccaacaatctgatcgaggaagcgtcgaggcggtgaaaatgaaattacagaatgtggaaaagacaaacatcttgctagccattgatctagcctgccaagaaaggcatgccatattgccgtgccgtcagttatttgctgctaagaagaaaaagaaatgggagaaaagggaaaaagatgagcgagtgatctactttgaatgaaagagaacttatgggaataaaaatagcgagcttatgtatatacaataacttgattctatatattactgccagagacagccatttcttttgttccacatgtggacatgtggtggtgtgtgttttctttttgtatcactGggcgtctgagcacaaatgcttgcgagacaattcccttgtagaacaggagtacattttggtgtaacATaaaaaagaacaaaaaaaaaaatctgaggactatagtaaatgttaatgaactgtttgcttctcttagagtgatgggaaatgatagtgaattgatgttacttgtgttttaggattgtcaGaactgaccgcaccactaactactgagatgaatttggttaacggttacaggcttacagcatgagcagtacctgtagaccagagttcaaacatgaagtaggtggtatcgtgcttcaaatgc
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| CDS seq | atgcgtacgagcgtagtaaggggttcgccagagatggatttcttcagcgaatatggtgatgctaacagatacaaaatacaggaagtcattggcaaaggaagctatggtgtagtttgttcagctattgaccaacatactggcgacaaggttgcaatcaagaaaatacacaatatctttgagcacttatctgatgctgcccgaatcctccgtgagatcAaattactccggctattacggcatcctgatatagttgagatcaagcatataatgctacctccatcaaggagggacttcaaggacatatatgttgtctttgagctgatggataccgatctCCAccaagtcatcaaggcaaatgatgacttaaccaaagaacatcatcagttctttctttatcagatgcttcgtgctttgaaataTATtcatactgctaatgtctatcatcgtgatttgaagccaaagaacatattggcaaacgctaactgtaaactcAaaatatgcgatttcggtctagcacgagtggcatttaatgacactcctacaacggtattctggacggattatgttgctactagatggtatagggctcctgagttgtgtggttctttctttactaagtattcaccagctattgacatatggagtattggctgcatttttgctgagattttaactgggaagcctttgtttcctggtaaaaatgtggttcaccagttggatctgatgactgatctcttgggtactccatcaatggatactgttacaaggattcggaatgagaaagcaaggaggtacttgagcagtatgaggaaaaagcagccagtacctttttctgagagattcccaaaagcagatcctgctgcactcaaacttctgcagaggcttttagcattcgacccgaaggatagaccaactgccgaagaggcgttggctgatccatattttaaaggccttgcgaaagcAGagagagaaccatcatgccagccaataacaaagatggagtttgagtttgagcggagaaaggtgactaaagaggatgtgaaggaacttatattccgtgaaatactggagtatcatcctcaacttcttaaggattacatgaatggaaccgaaaaaacaaacttcctatatcctagtgcccttgacaactttcggagacaatttgctaacctggaagaaaatggagggaagaatggagatgctgttccatcagacaggaaacatgtttcgctcccaaggactactacagttcattctgctccaattcctcccaaagatcatcaaaatataacttcccaagtaccccaaaggattccaggtagaacaggacgaggggcttgccctgtaataccatttgagaatttgagtgcaatgagcccatacaatcaacgaagggtggtaaggaatccagtgcttcctccagccaccaccaacctatcagcatatgcctaccaccgtaaatcggatagctcagaaagagagctccagcaggagcttgagaaagatcgcatgcggtaccagccatcagagcatttcatggatgctaaggtggtgtcacatatgtcccatgatttgagagcttcctcttactacgtttcaaaggcgaaatctgatgtagcagacagagctgccttacaatccaacatgatgcagggaattggcccttttaatggcattgctgcagttggaggtaactacaataaagtcagtactgttcagtatggggtctcgaggatgtattag
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| Protein seq | MRTSVVRGSPEMDFFSEYGDANRYKIQEVIGKGSYGVVCSAIDQHTGDKVAIKKIHNIFEHLSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMDTDLHQVIKANDDLTKEHHQFFLYQMLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTVFWTDYVATRWYRAPELCGSFFTKYSPAIDIWSIGCIFAEILTGKPLFPGKNVVHQLDLMTDLLGTPSMDTVTRIRNEKARRYLSSMRKKQPVPFSERFPKADPAALKLLQRLLAFDPKDRPTAEEALADPYFKGLAKAEREPSCQPITKMEFEFERRKVTKEDVKELIFREILEYHPQLLKDYMNGTEKTNFLYPSALDNFRRQFANLEENGGKNGDAVPSDRKHVSLPRTTTVHSAPIPPKDHQNITSQVPQRIPGRTGRGACPVIPFENLSAMSPYNQRRVVRNPVLPPATTNLSAYAYHRKSDSSERELQQELEKDRMRYQPSEHFMDAKVVSHMSHDLRASSYYVSKAKSDVADRAALQSNMMQGIGPFNGIAAVGGNYNKVSTVQYGVSRMY |
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| Function | Mitogen-activated protein kinase 8 [UniProtKB/Swiss-Prot:Q5SN53] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0027390 | OsNaBo_01g0027390.01 | Chr01 | 27623071 | 27629302 | + | NAM | ||
| CDS seq | atgcgtacgagcgtagtaaggggttcgccagagatggatttcttcagcgaatatggtgatgctaacagatacaaaatacaggaagtcattggcaaaggaagctatggtgtagtttgttcagctattgaccaacatactggcgacaaggttgcaatcaagaaaatacacaatatctttgagcacttatctgatgctgcccgaatcctccgtgagatcAaattactccggctattacggcatcctgatatagttgagatcaagcatataatgctacctccatcaaggagggacttcaaggacatatatgttgtctttgagctgatggataccgatctCCAccaagtcatcaaggcaaatgatgacttaaccaaagaacatcatcagttctttctttatcagatgcttcgtgctttgaaataTATtcatactgctaatgtctatcatcgtgatttgaagccaaagaacatattggcaaacgctaactgtaaactcAaaatatgcgatttcggtctagcacgagtggcatttaatgacactcctacaacggtattctggacggattatgttgctactagatggtatagggctcctgagttgtgtggttctttctttactaagtattcaccagctattgacatatggagtattggctgcatttttgctgagattttaactgggaagcctttgtttcctggtaaaaatgtggttcaccagttggatctgatgactgatctcttgggtactccatcaatggatactgttacaaggattcggaatgagaaagcaaggaggtacttgagcagtatgaggaaaaagcagccagtacctttttctgagagattcccaaaagcagatcctgctgcactcaaacttctgcagaggcttttagcattcgacccgaaggatagaccaactgccgaagaggcgttggctgatccatattttaaaggccttgcgaaagcAGagagagaaccatcatgccagccaataacaaagatggagtttgagtttgagcggagaaaggtgactaaagaggatgtgaaggaacttatattccgtgaaatactggagtatcatcctcaacttcttaaggattacatgaatggaaccgaaaaaacaaacttcctatatcctagtgcccttgacaactttcggagacaatttgctaacctggaagaaaatggagggaagaatggagatgctgttccatcagacaggaaacatgtttcgctcccaaggactactacagttcattctgctccaattcctcccaaagatcatcaaaatataacttcccaagtaccccaaaggattccaggtagaacaggacgaggggcttgccctgtaataccatttgagaatttgagtgcaatgagcccatacaatcaacgaagggtggtaaggaatccagtgcttcctccagccaccaccaacctatcagcatatgcctaccaccgtaaatcggatagctcagaaagagagctccagcaggagcttgagaaagatcgcatgcggtaccagccatcagagcatttcatggatgctaaggtggtgtcacatatgtcccatgatttgagagcttcctcttactacgtttcaaaggcgaaatctgatgtagcagacagagctgccttacaatccaacatgatgcagggaattggcccttttaatggcattgctgcagttggaggtaactacaataaagtcagtactgttcagtatggggtctcgaggatgtattag
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| Protein seq | MRTSVVRGSPEMDFFSEYGDANRYKIQEVIGKGSYGVVCSAIDQHTGDKVAIKKIHNIFEHLSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMDTDLHQVIKANDDLTKEHHQFFLYQMLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTVFWTDYVATRWYRAPELCGSFFTKYSPAIDIWSIGCIFAEILTGKPLFPGKNVVHQLDLMTDLLGTPSMDTVTRIRNEKARRYLSSMRKKQPVPFSERFPKADPAALKLLQRLLAFDPKDRPTAEEALADPYFKGLAKAEREPSCQPITKMEFEFERRKVTKEDVKELIFREILEYHPQLLKDYMNGTEKTNFLYPSALDNFRRQFANLEENGGKNGDAVPSDRKHVSLPRTTTVHSAPIPPKDHQNITSQVPQRIPGRTGRGACPVIPFENLSAMSPYNQRRVVRNPVLPPATTNLSAYAYHRKSDSSERELQQELEKDRMRYQPSEHFMDAKVVSHMSHDLRASSYYVSKAKSDVADRAALQSNMMQGIGPFNGIAAVGGNYNKVSTVQYGVSRMY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0027390 | OsNaBo_01g0027390.03 | Chr01 | 27623942 | 27629302 | + | NAM | ||
| CDS seq | atggatttcttcagcgaatatggtgatgctaacagatacaaaatacaggaagtcattggcaaaggaagctatggtgtagtttgttcagctattgaccaacatactggcgacaaggttgcaatcaagaaaatacacaatatctttgagcacttatctgatgctgcccgaatcctccgtgagatcAaattactccggctattacggcatcctgatatagttgagatcaagcatataatgctacctccatcaaggagggacttcaaggacatatatgttgtctttgagctgatggataccgatctCCAccaagtcatcaaggcaaatgatgacttaaccaaagaacatcatcagttctttctttatcagatgcttcgtgctttgaaataTATtcatactgctaatgtctatcatcgtgatttgaagccaaagaacatattggcaaacgctaactgtaaactcAaaatatgcgatttcggtctagcacgagtggcatttaatgacactcctacaacggtattctggacggattatgttgctactagatggtatagggctcctgagttgtgtggttctttctttactaagtattcaccagctattgacatatggagtattggctgcatttttgctgagattttaactgggaagcctttgtttcctggtaaaaatgtggttcaccagttggatctgatgactgatctcttgggtactccatcaatggatactgttacaaggattcggaatgagaaagcaaggaggtacttgagcagtatgaggaaaaagcagccagtacctttttctgagagattcccaaaagcagatcctgctgcactcaaacttctgcagaggcttttagcattcgacccgaaggatagaccaactgccgaagaggcgttggctgatccatattttaaaggccttgcgaaagcAGagagagaaccatcatgccagccaataacaaagatggagtttgagtttgagcggagaaaggtgactaaagaggatgtgaaggaacttatattccgtgaaatactggagtatcatcctcaacttcttaaggattacatgaatggaaccgaaaaaacaaacttcctatatcctagtgcccttgacaactttcggagacaatttgctaacctggaagaaaatggagggaagaatggagatgctgttccatcagacaggaaacatgtttcgctcccaaggactactacagttcattctgctccaattcctcccaaagatcatcaaaatataacttcccaagtaccccaaaggattccaggtagaacaggacgaggggcttgccctgtaataccatttgagaatttgagtgcaatgagcccatacaatcaacgaagggtggtaaggaatccagtgcttcctccagccaccaccaacctatcagcatatgcctaccaccgtaaatcggatagctcagaaagagagctccagcaggagcttgagaaagatcgcatgcggtaccagccatcagagcatttcatggatgctaaggtggtgtcacatatgtcccatgatttgagagcttcctcttactacgtttcaaaggcgaaatctgatgtagcagacagagctgccttacaatccaacatgatgcagggaattggcccttttaatggcattgctgcagttggaggtaactacaataaagtcagtactgttcagtatggggtctcgaggatgtattag
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| Protein seq | MDFFSEYGDANRYKIQEVIGKGSYGVVCSAIDQHTGDKVAIKKIHNIFEHLSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMDTDLHQVIKANDDLTKEHHQFFLYQMLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTVFWTDYVATRWYRAPELCGSFFTKYSPAIDIWSIGCIFAEILTGKPLFPGKNVVHQLDLMTDLLGTPSMDTVTRIRNEKARRYLSSMRKKQPVPFSERFPKADPAALKLLQRLLAFDPKDRPTAEEALADPYFKGLAKAEREPSCQPITKMEFEFERRKVTKEDVKELIFREILEYHPQLLKDYMNGTEKTNFLYPSALDNFRRQFANLEENGGKNGDAVPSDRKHVSLPRTTTVHSAPIPPKDHQNITSQVPQRIPGRTGRGACPVIPFENLSAMSPYNQRRVVRNPVLPPATTNLSAYAYHRKSDSSERELQQELEKDRMRYQPSEHFMDAKVVSHMSHDLRASSYYVSKAKSDVADRAALQSNMMQGIGPFNGIAAVGGNYNKVSTVQYGVSRMY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0027390 | OsNaBo_01g0027390.02 | Chr01 | 27623942 | 27629302 | + | NAM | ||
| CDS seq | atggatttcttcagcgaatatggtgatgctaacagatacaaaatacaggaagtcattggcaaaggaagctatggtgtagtttgttcagctattgaccaacatactggcgacaaggttgcaatcaagaaaatacacaatatctttgagcacttatctgatgctgcccgaatcctccgtgagatcAaattactccggctattacggcatcctgatatagttgagatcaagcatataatgctacctccatcaaggagggacttcaaggacatatatgttgtctttgagctgatggataccgatctCCAccaagtcatcaaggcaaatgatgacttaaccaaagaacatcatcagttctttctttatcagatgcttcgtgctttgaaataTATtcatactgctaatgtctatcatcgtgatttgaagccaaagaacatattggcaaacgctaactgtaaactcAaaatatgcgatttcggtctagcacgagtggcatttaatgacactcctacaacggtattctggacggattatgttgctactagatggtatagggctcctgagttgtgtggttctttctttactaagtattcaccagctattgacatatggagtattggctgcatttttgctgagattttaactgggaagcctttgtttcctggtaaaaatgtggttcaccagttggatctgatgactgatctcttgggtactccatcaatggatactgttacaaggattcggaatgagaaagcaaggaggtacttgagcagtatgaggaaaaagcagccagtacctttttctgagagattcccaaaagcagatcctgctgcactcaaacttctgcagaggcttttagcattcgacccgaaggatagaccaactgccgaagaggcgttggctgatccatattttaaaggccttgcgaaagcAGagagagaaccatcatgccagccaataacaaagatggagtttgagtttgagcggagaaaggtgactaaagaggatgtgaaggaacttatattccgtgaaatactggagtatcatcctcaacttcttaaggattacatgaatggaaccgaaaaaacaaacttcctatatcctagtgcccttgacaactttcggagacaatttgctaacctggaagaaaatggagggaagaatggagatgctgttccatcagacaggaaacatgtttcgctcccaaggactactacagttcattctgctccaattcctcccaaagatcatcaaaatataacttcccaagtaccccaaaggattccaggtagaacaggacgaggggcttgccctgtaataccatttgagaatttgagtgcaatgagcccatacaatcaacgaagggtggtaaggaatccagtgcttcctccagccaccaccaacctatcagcatatgcctaccaccgtaaatcggatagctcagaaagagagctccagcaggagcttgagaaagatcgcatgcggtaccagccatcagagcatttcatggatgctaagagctgccttacaatccaacatgatgcagggaattggcccttttaa
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| Protein seq | MDFFSEYGDANRYKIQEVIGKGSYGVVCSAIDQHTGDKVAIKKIHNIFEHLSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMDTDLHQVIKANDDLTKEHHQFFLYQMLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTVFWTDYVATRWYRAPELCGSFFTKYSPAIDIWSIGCIFAEILTGKPLFPGKNVVHQLDLMTDLLGTPSMDTVTRIRNEKARRYLSSMRKKQPVPFSERFPKADPAALKLLQRLLAFDPKDRPTAEEALADPYFKGLAKAEREPSCQPITKMEFEFERRKVTKEDVKELIFREILEYHPQLLKDYMNGTEKTNFLYPSALDNFRRQFANLEENGGKNGDAVPSDRKHVSLPRTTTVHSAPIPPKDHQNITSQVPQRIPGRTGRGACPVIPFENLSAMSPYNQRRVVRNPVLPPATTNLSAYAYHRKSDSSERELQQELEKDRMRYQPSEHFMDAKSCLTIQHDAGNWPF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0027390 | OsNaBo_01g0027390.04 | Chr01 | 27622560 | 27628800 | + | IsoSeq | ||
| CDS seq | cgcgtccgcgaccccgaccgaTttttgcagtggttcgctcgcgacgccaacacgaactcccgaaggcgaggcggctttgcacgcacgcacgcgcggcctacctcctcggcgcgagttgctcagtcgcagggggggaggtgggagcggggcggggcggggcgggcgtcccggtcggggattgcgctggttcgatccccccgcgcgtgtgggggtgtgggtgcgtgggatcgatctctccctctcgctcgctcgctcgctcgccctagcacctcgcgggcggggcgtcgcatgcggcggcgcggcgaggcgaggcaaatgcgggtggattcgtcgctggcggtggaggag
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| Protein seq | RVRDPDRFLQWFARDANTNSRRRGGFARTHARPTSSARVAQSQGGRWERGGAGRASRSGIALVRSPRACGGVGAWDRSLPLARSLARPSTSRAGRRMRRRGEARQMRVDSSLAVEE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr01 | 27628130 | 27629302 | + | OsNaBo_01g0027390.01,OsNaBo_01g0027390.03 | OsNaBo_01g0027390.03,OsNaBo_01g0027390.02,OsNaBo_01g0027390.01 | All |
| AF | Chr01 | 27622560 | 27624274 | + | OsNaBo_01g0027390.04 | OsNaBo_01g0027390.04,OsNaBo_01g0027390.01 | All |
| AF | Chr01 | 27622560 | 27624274 | + | OsNaBo_01g0027390.04 | OsNaBo_01g0027390.04,OsNaBo_01g0027390.03,OsNaBo_01g0027390.02 | All |
| AF | Chr01 | 27623071 | 27624274 | + | OsNaBo_01g0027390.01 | OsNaBo_01g0027390.03,OsNaBo_01g0027390.02,OsNaBo_01g0027390.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 8.107659 | 61.141247 | 20.009455 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0665200 | RBH | 2.132818 | 5.624018 | 13.693925 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g47530 | RBH | 1.335844 | 2.281712 | 2.173960 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0665200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0028220 | RBH | 2.794700 | 27.784470 | 15.124786 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0027750 | RBH | 1.178865 | 5.545759 | 6.324837 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0028190 | RBH | 5.711565 | 22.188940 | 22.444086 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0027420 | RBH | 1.062174 | 0.610285 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0027190 | RBH | 10.947236 | 32.102852 | 33.001923 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0453100 | RBH | 11.5169325 | 45.294184 | 13.0273145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0026890 | RBH | 1.784901 | 2.878382 | 2.850744 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0441900 | RBH | 18.2297935 | 34.7983835 | 19.202533 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0027140 | RBH | 0.875957 | 0.124362 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0027060 | RBH | 1.733202 | 29.650499 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0027370 | RBH | 20.700392 | 60.858829 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0027460 | RBH | 4.828660 | 4.255811 | 3.841380 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0027260 | RBH | 1.499247 | 12.442436 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G027640 | RBH | 2.421490 | 8.758065 | 7.759920 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0026920 | RBH | 1.694276 | 51.376976 | 17.862587 |
