Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0025980 | OGI:01079400 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:26351735-26356151 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cgcctagtacttcgccttccccccacaccccaatgcgctctcacatggaggagtcgtcgtctccccaaacacgacgacctcgaaccgcctccgtccccgcctcgccaacccgtccccttcccctgtagccaccgcgaccaccaccaccaccacgccgcggcatccacaacgccaccagagtacagagacgttccacccaccccgggccaccgaacccaacccccccagctcgctcgatcgatcgctagctccgacgacaggtttgagcgcgatgaggcatcccggcgcgggcggcgggagcggggacgccgggttcgtccgggcggaccagatcgacctcaagagcctcgacgagcagctggagcgccacctcggccgccccgcggagcgggccgcgtcgcagcacgggggcagcgggagccgccgcggcgagtccgccaggctcgggctcggggaggagccgccgcaggcgccgcaccatcagcggcgccgggaggactggGAgatcgaccccgccaagctcgtcatcagaggcgtcatcgcccgcggcacgttcggcaccgtccaccgcggcgtctacgacggccaggacgtcgctggtatttttttttctttcgcccctctgctataaacagctgattgctttgcagatatattcgtccactcggcgctgaccaagttttttttgctgtccatgaccatgagctattcgatgaaatggcctgttgcttactagtactcgttagtggcttcttctgcctgcgttagcttctggttccgatcgattcctctccaagtttttaggaaagtttgatgcgtgatttaattattttcatcggtatgttcttcttcctggattaggatatggattatggagtagagccgatcgattgatagatggcaaacgtcatttaccataggtgcGGTTgtttcgggtgcTtttggaagttgttttcgctcgtcgtgtcattagtgcttttccttgtcagcaaattgctaaaggtgatacctctgcttttcttgattccatggtgtattccgtgacttctgggtagataagcgtgcttttggcgtgcaacccttctcatgtgattgaaccaaccaacagttaaaagttttaataggcatgattcatgtgttttgtcttatgatgagcacctggaagttgaagattacatattaaagcagcggatatttcagatcaaaaagttgcaagttgcaactaggcacagtacttttcaGggaccaggaaaattcaaaagcatctgaaccaaattcgggttgataaaaggtccggattagcaattttgcactgtatcaccagctataatcacatgacagaaggcaaaagcagatgcagtggttttttctgtccagaactttatcacctattgcatgccgtcctttcaatatattggttcaccaggaaattgagtacaatgtcttgaaatggaaagtatcagttagattcataagaggtcattagaatcctaaatcacttggtgatgctcatgtaacctggtagcacaaggtagcggtggttttagtcagggttcaagtccccatcagcttcctttaaatggcagtgttcctccagcatgttcttttttttaTttttcaaagtatttgctaactcactggagttttttattggcttgcctttctctaccactttagtttgtatgacaaaaccagcttcctcactgcttttgcatgaataattcatcacttgtcacattatattcccccagatagattcaaacttggcaattaacagctaattgctaaatacacttttaggaaaacagagacatgcacagttcaccaagattttgttaccCTcatcaagaatgtgctattgatttacattAAaaaaagaatgtgtattgatgtagtaatatgcagcattactacttcaatataactttgtcttcgaatcaattgctaaatgcAaaaaagacttttTAtttctacttgtagtttcattgtcgaagtaactgatatatcttctctatcatccagtcaaaatgcttgactggggggaggatggccatagatcagaacgagaaatttcttcactaagagcagcatttgcacaagaggtcgctgtctggcataagcttgatcatccaaatgttaccaaggtaatctttgactggagaagacTtttttttttcatcccttcaaatttcataggttaaatcgtttcactgataaatatatagaccaatttacattatctctggtttacagaacatttgggaaatttacatttattagccctggtttacaaaaccaatttgtattcaatattgtccggcacaaccacatgggcaaacttgttttatcatgatgtatctctggcattataatctattaaggaaaccattggttgtggtgcaataatattttcatggctagagatatcagatatgacagtaggaggactggcagtcatgttcaaactctggtgctagctatataatacacccagtatcgtgtctaaaattggattccatgttttcctcttctgtataaaatagttattaaggtgtttagccatgcactgctaaagagcattagaatcttgTAtaattggacaatattttttttctgataatagtagcgaaggtgcgtactcctaTttgaaggtgcgtactcctatttggtatggcataattacaatggaattgattttagaacatggtgccgaatttaccaagcaataaatattagtatctgccatctacacagttcattttgagctatcaacaattatcattatttttttcattcacttggtgaacgtagttgtcttctgcttctcaactgggtcctgacaatatcttgaaatttaactgacagtttattggggctataatgggtgcaagagatttaaatatacagacagaacatggacattttggcatgccaagtaatatttgctgcgttgttgtcgagtaccttgccggaggtgcactgaaaaattttctgataaagaacaggagaaggaagctagcctataaagttgttgtccaattggctcttgaccttgctagggggtaagtaataatatatgtttctcttggtcctttttctggatttacatctattattccgttttaatctcagaagattttgttgtgggatttgcactgacagattaagctatcttcactcaaagaagatagttcatcgtgatgtgaagactgaaaatatgctccttgacaaatcaagaacagtgaaaatcgctgattttggtgttgcacgaattgaggcttcaaatcctagtgatatgacgggtgaaacaggcacacttggttacatggcacccgaggtattttccttcaaccatacggaaatcttatgctgatcatgtatcatttatgctgataggtctttacttataccaaactatcgaattaagaagggaaaagtgactatatgtcactgaaaatttccttgctggtatcgttcAaaaaacttattgcttggcgaatggaaaatcttaaccctgcatcccctcaatcatcttattcattgtcatgttgtgtttctgcgatcttccaaaattgcacgtaccattcttccgtaattctagtctactgttattgtccttacTGtcatacgttggcatcattgtgcaggttctcaacggccatccttacaacagGAAGTgtgatgtatatagctttggaatctgcctatGggagatatactgctgcgatatgccgtatcctgatctgagtttctcagaggtcacttcagctgttgttcgtcaggtaaataaaaaaaaacgccgtcctatcccgttttccccacttcacctctctgattcctgaactctgaagcactgaaaagaaaatcaccatccttgattgatgatgtactacagaacttgaggcctgagataccgcgctgctgccctagctccttggccaacgtgatgaagcgctgctgggacgcgaacccggacaagcggccggcgatggcggaggtggtgtccatgctggaggcgatcgacacgtccaagggcggtggcatgatcccgaccgaccagccacagggatgcttctcgtgcttcggtcggcaccgaggcccctgacgaacttgatctgatggcgtcactgataatttgttatcgctatatctcagtgtaatctaatcgcattcgctatggctaatttgaggagctgtgtgattgatgtaaatgccttaacggtcCAGcacctcagcttcatcgtcgtatgatcgctgcgaatcctaatgcttggcctatgataagatcgagcttagaagagattattgtgacagagctgccgacgaagtttacaatctcatcatatatggtcatgaagtagacccactgtactattgcagtgtaatcgacatctttgcagaatgttaataaaagaac
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| CDS seq | atgaggcatcccggcgcgggcggcgggagcggggacgccgggttcgtccgggcggaccagatcgacctcaagagcctcgacgagcagctggagcgccacctcggccgccccgcggagcgggccgcgtcgcagcacgggggcagcgggagccgccgcggcgagtccgccaggctcgggctcggggaggagccgccgcaggcgccgcaccatcagcggcgccgggaggactggGAgatcgaccccgccaagctcgtcatcagaggcgtcatcgcccgcggcacgttcggcaccgtccaccgcggcgtctacgacggccaggacgtcgctgtcaaaatgcttgactggggggaggatggccatagatcagaacgagaaatttcttcactaagagcagcatttgcacaagaggtcgctgtctggcataagcttgatcatccaaatgttaccaagtttattggggctataatgggtgcaagagatttaaatatacagacagaacatggacattttggcatgccaagtaatatttgctgcgttgttgtcgagtaccttgccggaggtgcactgaaaaattttctgataaagaacaggagaaggaagctagcctataaagttgttgtccaattggctcttgaccttgctaggggattaagctatcttcactcaaagaagatagttcatcgtgatgtgaagactgaaaatatgctccttgacaaatcaagaacagtgaaaatcgctgattttggtgttgcacgaattgaggcttcaaatcctagtgatatgacgggtgaaacaggcacacttggttacatggcacccgaggttctcaacggccatccttacaacagGAAGTgtgatgtatatagctttggaatctgcctatGggagatatactgctgcgatatgccgtatcctgatctgagtttctcagaggtcacttcagctgttgttcgtcagaacttgaggcctgagataccgcgctgctgccctagctccttggccaacgtgatgaagcgctgctgggacgcgaacccggacaagcggccggcgatggcggaggtggtgtccatgctggaggcgatcgacacgtccaagggcggtggcatgatcccgaccgaccagccacagggatgcttctcgtgcttcggtcggcaccgaggcccctga
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| Protein seq | MRHPGAGGGSGDAGFVRADQIDLKSLDEQLERHLGRPAERAASQHGGSGSRRGESARLGLGEEPPQAPHHQRRREDWEIDPAKLVIRGVIARGTFGTVHRGVYDGQDVAVKMLDWGEDGHRSEREISSLRAAFAQEVAVWHKLDHPNVTKFIGAIMGARDLNIQTEHGHFGMPSNICCVVVEYLAGGALKNFLIKNRRRKLAYKVVVQLALDLARGLSYLHSKKIVHRDVKTENMLLDKSRTVKIADFGVARIEASNPSDMTGETGTLGYMAPEVLNGHPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPAMAEVVSMLEAIDTSKGGGMIPTDQPQGCFSCFGRHRGP |
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| Function | Serine/threonine-protein kinase STY13 [UniProtKB/Swiss-Prot:Q9ZQ31] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0025980 | OsNaBo_01g0025980.01 | Chr01 | 26351735 | 26356151 | + | NAM | ||
| CDS seq | atgaggcatcccggcgcgggcggcgggagcggggacgccgggttcgtccgggcggaccagatcgacctcaagagcctcgacgagcagctggagcgccacctcggccgccccgcggagcgggccgcgtcgcagcacgggggcagcgggagccgccgcggcgagtccgccaggctcgggctcggggaggagccgccgcaggcgccgcaccatcagcggcgccgggaggactggGAgatcgaccccgccaagctcgtcatcagaggcgtcatcgcccgcggcacgttcggcaccgtccaccgcggcgtctacgacggccaggacgtcgctgtcaaaatgcttgactggggggaggatggccatagatcagaacgagaaatttcttcactaagagcagcatttgcacaagaggtcgctgtctggcataagcttgatcatccaaatgttaccaagtttattggggctataatgggtgcaagagatttaaatatacagacagaacatggacattttggcatgccaagtaatatttgctgcgttgttgtcgagtaccttgccggaggtgcactgaaaaattttctgataaagaacaggagaaggaagctagcctataaagttgttgtccaattggctcttgaccttgctaggggattaagctatcttcactcaaagaagatagttcatcgtgatgtgaagactgaaaatatgctccttgacaaatcaagaacagtgaaaatcgctgattttggtgttgcacgaattgaggcttcaaatcctagtgatatgacgggtgaaacaggcacacttggttacatggcacccgaggttctcaacggccatccttacaacagGAAGTgtgatgtatatagctttggaatctgcctatGggagatatactgctgcgatatgccgtatcctgatctgagtttctcagaggtcacttcagctgttgttcgtcagaacttgaggcctgagataccgcgctgctgccctagctccttggccaacgtgatgaagcgctgctgggacgcgaacccggacaagcggccggcgatggcggaggtggtgtccatgctggaggcgatcgacacgtccaagggcggtggcatgatcccgaccgaccagccacagggatgcttctcgtgcttcggtcggcaccgaggcccctga
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| Protein seq | MRHPGAGGGSGDAGFVRADQIDLKSLDEQLERHLGRPAERAASQHGGSGSRRGESARLGLGEEPPQAPHHQRRREDWEIDPAKLVIRGVIARGTFGTVHRGVYDGQDVAVKMLDWGEDGHRSEREISSLRAAFAQEVAVWHKLDHPNVTKFIGAIMGARDLNIQTEHGHFGMPSNICCVVVEYLAGGALKNFLIKNRRRKLAYKVVVQLALDLARGLSYLHSKKIVHRDVKTENMLLDKSRTVKIADFGVARIEASNPSDMTGETGTLGYMAPEVLNGHPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPAMAEVVSMLEAIDTSKGGGMIPTDQPQGCFSCFGRHRGP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 4.502813 | 4.607597 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0641000 | RBH | 0.472716 | 0.984206 | 4.824214 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g45380 | RBH | 0.319675 | 0.632238 | 1.401452 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0641000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0026890 | RBH | 0.163504 | 3.017980 | 3.645758 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0026380 | RBH | 0.074429 | 0.623062 | 1.794476 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0026780 | RBH | 0.242177 | 0.000000 | 5.341346 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0026040 | RBH | 0.123464 | 0.101670 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0025840 | RBH | 0.606510 | 4.001269 | 10.642634 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0433400 | RBH | 5.303554 | 8.505974 | 12.309381 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0025470 | RBH | 0.361557 | 0.0 | 0.756820 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0422600 | RBH | 6.778888 | 7.6232395 | 11.1800315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0025760 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0025680 | RBH | 0.208339 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0026000 | RBH | 5.635626 | 14.080959 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0026040 | RBH | 0.264736 | 0.229452 | 1.474291 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0025870 | RBH | 0.0 | 3.147094 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G026200 | RBH | 0.179925 | 1.024096 | 3.177917 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0027850 | RBH | 3.085007 | 8.904587 | 1.202383 |
