Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0022060 | OGI:01070540 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:23111697-23114323 | ||||||||
| Gene Symbol | OsFbox020, OsFbox20, Os_F0674 | ||||||||||
| DNA seq | tcatagtaccaatactctgacaggtgaagaaattccttctgtcagttgcttctgtatcaaacgtttctcttctttgttcttcgggtaacttgatcctgttgaggaggttccatcatcctgaaaatcacactcatcacaagtcttctcatctgacagaatgacaacctttagatttttagcttgctccatgattaatcttgtaaatatcatatatttgtcatttgcctcaaatccacaaatctctagttgtgccaaatggtagtgctggaaattaaaatctatccagaacatgttccttttctctgggaagaggatttgcctctgcttgacttcacttcctccatactggcaagaatgtttctggacctgtaatcaaacataccttgtcaaaatggtgggaatcaataaatttAGAGagagagagagagagagagagagagagatctaatccacatttataactatagtttgaggactactacatgcgtcaaggacaaagaatctaaatatctaatccatctcagtatgaagcatggagtagagacagctaaaccctttgtgccattggaagatttcaaagttaacagttacgcgaattgctagaaaaatacaaaaatggattaatttgtgttgagccacttaccccaatactaaattttcggagggacggtgcagctttaaggaggtacaacgtccatagaaggtcacactcgtcaaatatccggcagagagacaaggtagtcagcctgccaaacgcagcaacaaatcggtttgaatcctcaggttgtatccaaatctaaggagaaaacaaaaaagagaaacaattaggcatcaacagtatcAaacataaatctatgggactacaagttctatcttaaaatatagcaatctaatatcagaagagtcAcatattagtacaacataaatttggataaaactagaatatcccttagccgatactgattgttataTtttatataaaattacagtactccatctgtcccaaattagttctctctttatcatttaaattttttctcacagtagttgtcgctccaaaatactacttgacccattaatcacgtatcatttgaatttatcCTcattctaccctcaaacacccttctattctcaatcatgcattAttcgataagagtagttttgtcttttattttaaactttagcatataccaaacaatctagaaaacaagtactcccttcgTttcgAaatgtttgacgccattgactttttagcacatgtttgactgttcatcttattcaaaaaatttaagtaattattaattcttttcctatcatttgattcattgttaaatatattttTAtataggcatataattttacatatttcacAaaagtttttgaataagacaaacggtcaaacatgtgctaaaaagttaacggtgttaaacatttcgaaacggagggagtaatttgggatggaggtagtaggaactaactgaagtttttttccaagatgtccacccaacttacctcctcatttctgaaattgagagataggcaatccaggttggtggcgctagccaagagctcgctcagcctgaatctttgtgaagaacgccgtgtacaagaattgacgagagaaatctcgcggaggcacggagccgcggcgaggcggagcggagcagtcgtggtcgtcgagctccagctctcaagggtgagccggacaagcttcggcgcgcgtcgcagctcgacccgccggtagccgcaccccctgaccaccagctcccgcagctccggcgcgccgtcgatcgccagcgccgcgccctcgcctcggccggcgcggcagccgtgcagcgtgaggtggaccagccgcgcgcacgcgcccagcacagcggccacgtccgccgcgGTgagccatagcctctccagccggagcttcgtgatcagcaggccgcgcggccgcgccacgaggccggtgaggaggaggcgccgccgcgcgccgtcgcgcatctgcgcctcggtggtgtccgccgtcgcgcggacatcgagctgcaccgagctgcatcgtgcgccgccgccgccggcgtcagccgccgcgcccgcggcgagaaggaggtggcgcacggcgtagacgagctcgtcgtcctcctcgtccgtgaggaggaacctcagcgcgaGgcagtgggtggccgtgggggaggccaagaacgccatggctgccctgacgaagggaggtatggctcggtcgaggtctcgctgctgcaagttcttgaaaccgtcttctcctccggctctggctgatctggggaggaactggaagatgctgaggaagggccggcgtatccaccatgggaggtgcagccatcgcctcgacagcacgctggttgccaccgcttggcgcgtgttgcccagcttctccaagatggacaccagcacatcgtccggcaactcgctgattctatcctcccctgcaatcgcctgcagcatcatgaataattataattaattaaccttattttagtgaaggaattAataagagtatatatgtgacaaaaaaagagagagttaaagcgcttaattaagtgaggattaattaccactcgttgattgcttgggcgtggaaggagctccattggatgcaacat
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| CDS seq | atgttgcatccaatggagctccttccacgcccaagcaatcaacgagtggcgattgcaggggaggatagaatcagcgagttgccggacgatgtgctggtgtccatcttggagaagctgggcaacacgcgccaagcggtggcaaccagcgtgctgtcgaggcgatggctgcacctcccatggtggatacgccggcccttcctcagcatcttccagttcctccccagatcagccagagccggaggagaagacggtttcaagaacttgcagcagcgagacctcgaccgagccatacctcccttcgtcagggcagccatggcgttcttggcctcccccacggccacccactgcCtcgcgctgaggttcctcctcacggacgaggaggacgacgagctcgtctacgccgtgcgccacctccttctcgccgcgggcgcggcggctgacgccggcggcggcggcgcacgatgcagctcggtgcagctcgatgtccgcgcgacggcggacaccaccgaggcgcagatgcgcgacggcgcgcggcggcgcctcctcctcaccggcctcgtggcgcggccgcgcggcctgctgatcacgaagctccggctggagaggctatggctcACcgcggcggacgtggccgctgtgctgggcgcgtgcgcgcggctggtccacctcacgctgcacggctgccgcgccggccgaggcgagggcgcggcgctggcgatcgacggcgcgccggagctgcgggagctggtggtcagggggtgcggctaccggcgggtcgagctgcgacgcgcgccgaagcttgtccggctcacccttgagagctggagctcgacgaccacgactgctccgctccgcctcgccgcggctccgtgcctccgcgagatttctctcatttggatacaacctgaggattcaaaccgatttgttgctgcgtttggcaggctgactaccttgtctctctgccggatatttgacgagtgtgaccttctatggacgttgtacctccttaaagctgcaccgtccctccgaaaatttagtattggggtccagaaacattcttgccagtatggaggaagtgaagtcaagcagaggcaaatcctcttcccagagaaaaggaacatgttctggatagattttaatttccagcactaccatttggcacaactagagatttgtggatttgaggcaaatgacaaatatatgatatttacaagattaatcatggagcaagctaaaaatctaaaggttgtcattctgtcagatgagaagacttgtgatgagtgtgattttcaggatgatggaacctcctcaacaggatcaagttacccgaagaacaaagaagagaaacgtttgatacagaagcaactgacagaaggaatttcttcacctgtcagagtattggtactatga
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| Protein seq | MLHPMELLPRPSNQRVAIAGEDRISELPDDVLVSILEKLGNTRQAVATSVLSRRWLHLPWWIRRPFLSIFQFLPRSARAGGEDGFKNLQQRDLDRAIPPFVRAAMAFLASPTATHCLALRFLLTDEEDDELVYAVRHLLLAAGAAADAGGGGARCSSVQLDVRATADTTEAQMRDGARRRLLLTGLVARPRGLLITKLRLERLWLTAADVAAVLGACARLVHLTLHGCRAGRGEGAALAIDGAPELRELVVRGCGYRRVELRRAPKLVRLTLESWSSTTTTAPLRLAAAPCLREISLIWIQPEDSNRFVAAFGRLTTLSLCRIFDECDLLWTLYLLKAAPSLRKFSIGVQKHSCQYGGSEVKQRQILFPEKRNMFWIDFNFQHYHLAQLEICGFEANDKYMIFTRLIMEQAKNLKVVILSDEKTCDECDFQDDGTSSTGSSYPKNKEEKRLIQKQLTEGISSPVRVLVL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0022060 | OsNaBo_01g0022060.01 | Chr01 | 23111697 | 23114323 | - | NAM | ||
| CDS seq | atgttgcatccaatggagctccttccacgcccaagcaatcaacgagtggcgattgcaggggaggatagaatcagcgagttgccggacgatgtgctggtgtccatcttggagaagctgggcaacacgcgccaagcggtggcaaccagcgtgctgtcgaggcgatggctgcacctcccatggtggatacgccggcccttcctcagcatcttccagttcctccccagatcagccagagccggaggagaagacggtttcaagaacttgcagcagcgagacctcgaccgagccatacctcccttcgtcagggcagccatggcgttcttggcctcccccacggccacccactgcCtcgcgctgaggttcctcctcacggacgaggaggacgacgagctcgtctacgccgtgcgccacctccttctcgccgcgggcgcggcggctgacgccggcggcggcggcgcacgatgcagctcggtgcagctcgatgtccgcgcgacggcggacaccaccgaggcgcagatgcgcgacggcgcgcggcggcgcctcctcctcaccggcctcgtggcgcggccgcgcggcctgctgatcacgaagctccggctggagaggctatggctcACcgcggcggacgtggccgctgtgctgggcgcgtgcgcgcggctggtccacctcacgctgcacggctgccgcgccggccgaggcgagggcgcggcgctggcgatcgacggcgcgccggagctgcgggagctggtggtcagggggtgcggctaccggcgggtcgagctgcgacgcgcgccgaagcttgtccggctcacccttgagagctggagctcgacgaccacgactgctccgctccgcctcgccgcggctccgtgcctccgcgagatttctctcatttggatacaacctgaggattcaaaccgatttgttgctgcgtttggcaggctgactaccttgtctctctgccggatatttgacgagtgtgaccttctatggacgttgtacctccttaaagctgcaccgtccctccgaaaatttagtattggggtccagaaacattcttgccagtatggaggaagtgaagtcaagcagaggcaaatcctcttcccagagaaaaggaacatgttctggatagattttaatttccagcactaccatttggcacaactagagatttgtggatttgaggcaaatgacaaatatatgatatttacaagattaatcatggagcaagctaaaaatctaaaggttgtcattctgtcagatgagaagacttgtgatgagtgtgattttcaggatgatggaacctcctcaacaggatcaagttacccgaagaacaaagaagagaaacgtttgatacagaagcaactgacagaaggaatttcttcacctgtcagagtattggtactatga
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| Protein seq | MLHPMELLPRPSNQRVAIAGEDRISELPDDVLVSILEKLGNTRQAVATSVLSRRWLHLPWWIRRPFLSIFQFLPRSARAGGEDGFKNLQQRDLDRAIPPFVRAAMAFLASPTATHCLALRFLLTDEEDDELVYAVRHLLLAAGAAADAGGGGARCSSVQLDVRATADTTEAQMRDGARRRLLLTGLVARPRGLLITKLRLERLWLTAADVAAVLGACARLVHLTLHGCRAGRGEGAALAIDGAPELRELVVRGCGYRRVELRRAPKLVRLTLESWSSTTTTAPLRLAAAPCLREISLIWIQPEDSNRFVAAFGRLTTLSLCRIFDECDLLWTLYLLKAAPSLRKFSIGVQKHSCQYGGSEVKQRQILFPEKRNMFWIDFNFQHYHLAQLEICGFEANDKYMIFTRLIMEQAKNLKVVILSDEKTCDECDFQDDGTSSTGSSYPKNKEEKRLIQKQLTEGISSPVRVLVL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0583300 | SBH | 0.0 | 0.280690 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g40160 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0583300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0023040 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0022630 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0022970 | RBH | 0.0 | 0.0 | 0.469572 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0022360 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0022090 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0378200 | SBH | 2.3047455 | 3.793409 | 2.824311 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0022040 | RBH | 0.0 | 0.0 | 0.087408 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0367800 | RBH | 0.0339995 | 0.011235 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0022010 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0021940 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0022210 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0022280 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0022070 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G022380 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
