Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0021990 | OGI:01070390 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:23064583-23067212 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgggcatgggcgatttgtcgccggtttgaccgcgcgtcgcatcccgtcatccccgtgcgtcgcgtccccaccaccaCccccccgcggcgcgaggatgaTATGCtgctgtgcgGCgcgcgcgcgcggtggcctcccctcgccgCTCcccctgaccgctagccacgccacgccacgccacgccacgtccgtccgcccccccccccccccggtccacgcggtgtcgtgccaggccagcctatccagaccaccaccgctatcccccacctgcgcgaccgaaaccgcgtcacccccaaccccagggcacgcatctccacgcccccacccaccccaacacaacacacgcggtcaccttccccgccgtttcctgcaccacacacacaaacgccgcgcgcacacgcacgcacagagagagagagagagcaggtctccccttccttCccccccccccttccttgtcccgaaagcaaCcccgcgtcatcacccccaccgcgttcccacctcgccgtcatcctccccCTccccgtcaacatcaccggatcacgccgtatttatatatgcctCccccccatttcacaccagtctcctccgatcctctcatccaccaccaccatcgcaagagagacgctcgccttccgtctcctgacgcgcacacgccaccaacaccgcgacgcgacgcgacgcgagcgccaaacgtgagcgcggaaagaggagaggtgaggtgaggtgcgtggcccttggactttcgaggcgaaaccccgcgtgcgtgcgtatatgagatccacatccggcgcccgccccagcagcggtggaggaggaggggacgacgactacgccttctactactctttcttccaggacgccgccgccgccgccgcgtcgccgctcggcctcgacgacgccgccgctatgaccaacggtggacggaagcggaagaggggaggaggaggggatggggcggacggcggcgcccccgccgcgtccaggaaggatgggcctggaggggacggtgaGgggggaaacggcaggaagcggtccatcgccaagatactcacctcgctcgccgcgctcgaggcggaggagcactccgaccgcgccggcgccgccgacgcctcccgccgggagctcgcgctgctcgagtccaacgccgaccacaagtcgcaggccatgatggactactacgccaagatggaggggagcttcgacgccgccgcggagtcggacgccaccgcgcggtccaagcgctcgcgcctcgccgcgtcggccgccacggcggcggtcgtggctaccgaggaaggggccgccgagacggcctccgcgtcggcgtcgccgtcgcgagcgagcggcggcgggggcgcggggcaccaccagcggcggctgtgggtgaaggaccggtcgcgggcgtgGTgggacaaatgcaacagCccggactacccggaggaggagttccgtcgcgcgttccggatggggcgcgagacgttcgacatgatctgcgaggcgctgggctccgcggtggccaaggaggacaccatgctccgcgccgccatccccgtgcgccagcgcgtcgccgtctgcatctggcgcctcgccacgggcgagccgctccgcctcgtctccaagcgcttcggcctcgggatctccacctgccacaagctcgtcctcgaggtgtgcgccgccatcaagtccgtcctcatgccgcgcttCctccagtggcccgacgaggccgccgccgccgccttcaaggagaggttccaggcggcgtacggcgtcccgggcgtgatcggcgccatgtacaccacccacatccccatcatcgcgcccaagatctcggtcgccgcctacttcaaccgccgccacacggagcgcaaccagaagacgtcctactccatcacgctccagggggtggtcggccccgacggcgccttcaccgacgtgtgcatcggctggccggGGTccatgccggacgaccaGgtgctggagaagtccatgctgcaccagcgcgccgcggcggggatgatgcacagcgcctgccttgtcggcggcgccagctacccgctcatggactgggtgctcgtcccctacacgcaccagaacctgacgtggacgcagcacgccttcaacgagaaggtgggcgacctccgccgcgtcgccgtcgacgcgTTcgcccgcctcaaggcgcggtgggcgtgcctccagaagcggacggaggtgaagctccaggacctccccgtcgtgctcggcgcctgctgcgtcctccacaacatctgcgagacgcgcggcgaggagctcgagccggagctccggttcgagctcgtcgacgacgagacctcgccggagacccccgtccgctccgaggccgccaagcgcgccagggacaacatcgcccacaacctcctccaccgcggcttcgccggaaccaccttcttctgaccatcgatcgatcgatcacaccaccgccgcttcttggtacaaaatcccccgacaaagtagcgattcttttagccccgctagaatagaaagattttgctagttcTtttttttgggtcagcagtgcaatgcgatggagtgtaaaacataatttgggcagctgtttgttttcaaattcaagatatatacagttcaatttacaact
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| CDS seq | atgggcatgggcgatttgtcgccggggggaaacggcaggaagcggtccatcgccaagatactcacctcgctcgccgcgctcgaggcggaggagcactccgaccgcgccggcgccgccgacgcctcccgccgggagctcgcgctgctcgagtccaacgccgaccacaagtcgcaggccatgatggactactacgccaagatggaggggagcttcgacgccgccgcggagtcggacgccaccgcgcggtccaagcgctcgcgcctcgccgcgtcggccgccacggcggcggtcgtggctaccgaggaaggggccgccgagacggcctccgcgtcggcgtcgccgtcgcgagcgagcggcggcgggggcgcggggcaccaccagcggcggctgtgggtgaaggaccggtcgcgggcgtgGTgggacaaatgcaacagCccggactacccggaggaggagttccgtcgcgcgttccggatggggcgcgagacgttcgacatgatctgcgaggcgctgggctccgcggtggccaaggaggacaccatgctccgcgccgccatccccgtgcgccagcgcgtcgccgtctgcatctggcgcctcgccacgggcgagccgctccgcctcgtctccaagcgcttcggcctcgggatctccacctgccacaagctcgtcctcgaggtgtgcgccgccatcaagtccgtcctcatgccgcgcttCctccagtggcccgacgaggccgccgccgccgccttcaaggagaggttccaggcggcgtacggcgtcccgggcgtgatcggcgccatgtacaccacccacatccccatcatcgcgcccaagatctcggtcgccgcctacttcaaccgccgccacacggagcgcaaccagaagacgtcctactccatcacgctccagggggtggtcggccccgacggcgccttcaccgacgtgtgcatcggctggccggGGTccatgccggacgaccaGgtgctggagaagtccatgctgcaccagcgcgccgcggcggggatgatgcacagcgcctgccttgtcggcggcgccagctacccgctcatggactgggtgctcgtcccctacacgcaccagaacctgacgtggacgcagcacgccttcaacgagaaggtgggcgacctccgccgcgtcgccgtcgacgcgTTcgcccgcctcaaggcgcggtgggcgtgcctccagaagcggacggaggtgaagctccaggacctccccgtcgtgctcggcgcctgctgcgtcctccacaacatctgcgagacgcgcggcgaggagctcgagccggagctccggttcgagctcgtcgacgacgagacctcgccggagacccccgtccgctccgaggccgccaagcgcgccagggacaacatcgcccacaacctcctccaccgcggcttcgccggaaccaccttcttctga
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| Protein seq | MGMGDLSPGGNGRKRSIAKILTSLAALEAEEHSDRAGAADASRRELALLESNADHKSQAMMDYYAKMEGSFDAAAESDATARSKRSRLAASAATAAVVATEEGAAETASASASPSRASGGGGAGHHQRRLWVKDRSRAWWDKCNSPDYPEEEFRRAFRMGRETFDMICEALGSAVAKEDTMLRAAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCAAIKSVLMPRFLQWPDEAAAAAFKERFQAAYGVPGVIGAMYTTHIPIIAPKISVAAYFNRRHTERNQKTSYSITLQGVVGPDGAFTDVCIGWPGSMPDDQVLEKSMLHQRAAAGMMHSACLVGGASYPLMDWVLVPYTHQNLTWTQHAFNEKVGDLRRVAVDAFARLKARWACLQKRTEVKLQDLPVVLGACCVLHNICETRGEELEPELRFELVDDETSPETPVRSEAAKRARDNIAHNLLHRGFAGTTFF |
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| Function | Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 [UniProtKB/Swiss-Prot:Q94K49] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0021990 | OsNaBo_01g0021990.01 | Chr01 | 23064583 | 23067010 | + | NAM | ||
| CDS seq | atgggcatgggcgatttgtcgccggggggaaacggcaggaagcggtccatcgccaagatactcacctcgctcgccgcgctcgaggcggaggagcactccgaccgcgccggcgccgccgacgcctcccgccgggagctcgcgctgctcgagtccaacgccgaccacaagtcgcaggccatgatggactactacgccaagatggaggggagcttcgacgccgccgcggagtcggacgccaccgcgcggtccaagcgctcgcgcctcgccgcgtcggccgccacggcggcggtcgtggctaccgaggaaggggccgccgagacggcctccgcgtcggcgtcgccgtcgcgagcgagcggcggcgggggcgcggggcaccaccagcggcggctgtgggtgaaggaccggtcgcgggcgtgGTgggacaaatgcaacagCccggactacccggaggaggagttccgtcgcgcgttccggatggggcgcgagacgttcgacatgatctgcgaggcgctgggctccgcggtggccaaggaggacaccatgctccgcgccgccatccccgtgcgccagcgcgtcgccgtctgcatctggcgcctcgccacgggcgagccgctccgcctcgtctccaagcgcttcggcctcgggatctccacctgccacaagctcgtcctcgaggtgtgcgccgccatcaagtccgtcctcatgccgcgcttCctccagtggcccgacgaggccgccgccgccgccttcaaggagaggttccaggcggcgtacggcgtcccgggcgtgatcggcgccatgtacaccacccacatccccatcatcgcgcccaagatctcggtcgccgcctacttcaaccgccgccacacggagcgcaaccagaagacgtcctactccatcacgctccagggggtggtcggccccgacggcgccttcaccgacgtgtgcatcggctggccggGGTccatgccggacgaccaGgtgctggagaagtccatgctgcaccagcgcgccgcggcggggatgatgcacagcgcctgccttgtcggcggcgccagctacccgctcatggactgggtgctcgtcccctacacgcaccagaacctgacgtggacgcagcacgccttcaacgagaaggtgggcgacctccgccgcgtcgccgtcgacgcgTTcgcccgcctcaaggcgcggtgggcgtgcctccagaagcggacggaggtgaagctccaggacctccccgtcgtgctcggcgcctgctgcgtcctccacaacatctgcgagacgcgcggcgaggagctcgagccggagctccggttcgagctcgtcgacgacgagacctcgccggagacccccgtccgctccgaggccgccaagcgcgccagggacaacatcgcccacaacctcctccaccgcggcttcgccggaaccaccttcttctga
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| Protein seq | MGMGDLSPGGNGRKRSIAKILTSLAALEAEEHSDRAGAADASRRELALLESNADHKSQAMMDYYAKMEGSFDAAAESDATARSKRSRLAASAATAAVVATEEGAAETASASASPSRASGGGGAGHHQRRLWVKDRSRAWWDKCNSPDYPEEEFRRAFRMGRETFDMICEALGSAVAKEDTMLRAAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCAAIKSVLMPRFLQWPDEAAAAAFKERFQAAYGVPGVIGAMYTTHIPIIAPKISVAAYFNRRHTERNQKTSYSITLQGVVGPDGAFTDVCIGWPGSMPDDQVLEKSMLHQRAAAGMMHSACLVGGASYPLMDWVLVPYTHQNLTWTQHAFNEKVGDLRRVAVDAFARLKARWACLQKRTEVKLQDLPVVLGACCVLHNICETRGEELEPELRFELVDDETSPETPVRSEAAKRARDNIAHNLLHRGFAGTTFF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0021990 | OsNaBo_01g0021990.02 | Chr01 | 23066786 | 23067212 | + | IsoSeq | ||
| CDS seq | atggagtgtaaa |
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| Protein seq | MECK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.427507 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0582600 | RBH | 2.723485 | 2.913480 | 3.882745 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g40070 | RBH | 1.757549 | 1.864952 | 0.937080 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0582600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0022970 | RBH | 0.033688 | 5.713748 | 3.175989 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0022570 | RBH | 0.056196 | 0.940863 | 1.952498 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0022900 | RBH | 0.552075 | 3.923676 | 1.433773 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0022290 | RBH | 0.093461 | 0.155228 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0022020 | RBH | 1.379865 | 10.478752 | 5.901336 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0377700 | RBH | 16.098865 | 192.0610045 | 32.86092 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0021970 | RBH | 0.119075 | 0.820016 | 0.244822 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0366900 | RBH | 20.872923 | 179.1848295 | 4.425342 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0021940 | RBH | 0.088273 | 0.159053 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0021880 | RBH | 0.088458 | 3.192177 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0022150 | RBH | 1.029345 | 8.304573 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0022220 | RBH | 0.831182 | 0.381219 | 0.489505 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0022000 | RBH | 0.089401 | 1.478326 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G022310 | RBH | 0.248536 | 1.465285 | 1.849895 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0028990 | RBH | 0.337616 | 4.711618 | 2.803510 |
