Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0021980 | OGI:01070380 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:23052005-23056815 | ||||||||
| Gene Symbol | CYP57, OsCYP57, OsCYP-3, OsCYP57a, OsCYP57b | ||||||||||
| DNA seq | ccaagataagagtcggatcaatttatgcggttatataaataatctgtcctgtagcacatgataccacaaaagaaattccaatAaaaaaaaagaccactgcaacttaataagggcattatgaacctctaagtttaaaacaattgttatttacagtttgattgacaatgatacaaatgttaatgttaaaagcactagtctacaggtggtccctctaccatgaaccacaacatagcgaaacgcagtgtacagttacaacaccatcaaaactgcagtagtggcactgTtatgATatgaggtaatcttttgcacggtgcacctctgagaggcaaaaaaaggataaattaatgtaagctgaaaaattcaggaaggccgcttatgaaggaaacagtaaagcacctcaagcagcttatgcggtcaggtcagagatctgcctgcccattcacgttctctccgcttaagctttgcttgcatcttgttgaatttttgttttcctttctcaaggagaggatcaaccactacatagtcatctggatcatctttcctcgtcattccatcctgtaaatatcagataacaactcaggcactgcacataatgaatcTAtttgccacttgtgtgctgaaaaagatgagcaagaaaagtagagggtgtggtagcataccttagaagaatcaggttcaaaagtcagccggttgctgtgccaccctgtgtaatcctcttcatcagtcttcttttctgtgttaccagttgcagggttcttactgagaaacgatgccttgaacttctgtagcttcgctaacgtctaacaagaaaaacaacaggtaagaaacatttcacagctcaacttagagaacatagaagctaagaagtagatgtgatgctaattggaatatgattatatgaataggcatgaacatcttggcatgggataaaaatgttgaaattgcaaacaagcAaaaaaaaatcactacctcatcttcacggccttgaagacggcgccttttctgtttttgcaaatgcttctcttgctcagctggattcaatagctgcaaattagcatcgcctttggacatcctttcagcactggcttctgagccaatgccTtttttcttcatagaaaattttctagacttggttagctggtggtcttcaTtgtCgtcatcattgtcatcgtcactcctgcaaacatcagataggtaacaaatttactaaaaccattggaataaaatgaagttcagaagtccagtacagcatggtccactgattctgaacaacgttacggttaaaggatgaacagaaataaaccaaatcttttaagattgaaatagaccatttcttttaagattgattCtggtttggaaagatagtccatttggagtttcagacagattcttgaccctgaatattagtttgccaataactaaatgtaaatactgtaccatgacatttcagaacataatcatataatatTGtataagagagaggtatttcagggggctgcaggattgcatgctaagtagtgaagtcgagaaggggtatattatagttgttcaatagggtcaaatccgatttatccccctcctcccctctttcaactatcgcaaaagtacagttcaccgttgttcaatattacataataatgaggctttgaaataaacaaccTtttcaacattacacagctatttcaaaggtatggtacagataaggttatacagagatatggtagatatgaacctgtgaactggtaactccttgtctttacggtgtgctttatctgtaccaagcaacaaaacaaagtattaaacaatatttagcaatcataattccgtaagtattaaaaaattgcaaacattggcaggaaattgcagaagcacactacctgctaaaactgttacactactatcaaattgttcaacagttggatattgatgtttctaatataaacaggaagataatttacctgTttttttggaggtttcactagagcggatgtccccaagctccctgcgtttTCttagaatttgagagcgcattctgttatcaaaatcctcctcgttttcatcgtcaggataatcatctgtttctgaatcatgctctagctctctgaagtcagaTttttttgatactaaagcctccctgacagattgaacagtctccTTttttttgtcctcttgctccttggtctgcaagattggaataagcataatgacTttttacatttaagaggaactaaaactaattcATAataaagTAaatatgtccaatgccatcgtaaaggaacgcaaaaaaataccatccaaaaggtcttctgtagtaaaatgccatcatcagacatgaaaaattctggggaatactaCTGctgcaacatttcccaTCCacttaacatctattttggtgagagaattcgaaaggaggcaaaatagattttgaacttgATAattacatggattagaaatactttattaaatctgcataaagaattgttcgcttgaaaattaaatgtttaatctgatttttaaaaatgcttccaagTtttggtatgtTAtaacaggtgaaactgcctaagtaacaacaaaagaaaagaaaatgaaagtaaaaagtgtgggggaaggggggaatgggcatttcatacccatgggatggaaaatgtgatggtaatgataattatcagaATatttcatgttcgcgatagcatttttctaaatgagaccattgtaatggttccaagatgacattcctctgtaatgtctcttaacaagttaactcttaatctgatctaaaggtggcacagtaattgcaaaaccatagcagagtaacagtttatgccctaaagtaacaaaagacagattgtgcatgaCTgaagaacaacATataacaggaaatcagatcataaatgagagtattctgattagtactaagtacagagtggtcctgagttcatagtacatgtttcctggaaaataaactaggacctcctttgtaacaaaggaatttctaggaagcggttcagttctctcaggaaccaggaaaaaaatcatgtgttcaaaaggaggCctagtatgaaatatttaTTaaaaaaaatacttttttgactcaatgtcttgtagctagatacttggctatgaagtattatggactagtgaaaactgaaaacacataacctacataaacagctcaaatgaaccaccttccttggtaaagtagaaaaaacagcacatcaagtcctgaTttcatactgtaaggtgctgaaacagcagcgttactgcagagtttgttttgtcctgttattgttactgtgagtgtgTtcactggccagttgccagttttaaaggcttatctaactacaaatgatattactcaccagttgctcatccggtgcctctcctttaagaaaCcgaggatcatccaacacatcgtgaatactttttaTtttgtccttcacagaggatgctgcctcattctcctcctcttctacttcatctccaaatgaaagcacattaagttgcctgtatgatgaataaaacaagtcaaaacaaacgcacatctccctatcttttcaagggcaACatgaagtggcagacaacttacttaacggctttcttctttgatttcccctcgatatcacccttggcagtaggctcagtcttcttaagttgccttggaacAatatcatcaaatgggttccagagtaccttcagaattagaagcatacgtagctaaccattaaataagttggcttcaccataaatagtttttagaaggtactatatcatcaaattgtaagtaccaaaacaaagtggaagtgcaccAaaaacgagagaacaaaagacaacctcaactgaaagaattttctgcggatacacaggtcgatcatccttatcagtctcgatatcagccaaggctagaaggttgaaaatagaatcgccagtgacctgcatacagcatacaacatcataataagcaaccataatcaccctaaatgagacaaatgcatagcaccaaataccgccctgagatcaataatcaagccaaacacagtacCTTcTTCCCAAAGATGGTATTCTTCTTATCGAGCCAATCACAACGGTCAAGGCTGATAAAGAATTGACTCCCATTCGAGTGAGGCGTGCCGGCATTGGCACACGCCACTAAACCCCTGTGGTTAAACCTCAAGCGCGTATGGAACTCATCTGCAAATGGGGCCCCATATATGCTCTCACCCCCTGCATATAGCAATTAGACACATATCACCTTCAATTCAAAAGCATTATACAACTCCCCAATTACACTATGGCTCACATACCCAACAAATTAACACAATCAAATTGTTAACCAGGCAGCATATATCCTACTAGCTTTTCGGTCACTGTTCAGCAATTCGATCCAACCCCCCCCCCCCCCCAGCAACCTAATCAGGCCAACAAACAGTACAGTCTGGAATCACAAACCCTAGATACAGATAGGCGAAGGATTTGGGGATCTCACCGGTGCCGGAGCCGGTGGGGTCGCCGCCcctggacgaggaaggacttgatgacgcggtggaagagcgtgccgtcgtagtagccctcgaggcagagctgcacgaagttgcgcaccgccttgggggcctccttcggccacagctcgatgtcgagcgggccggccgtcgtctgcactaccaccttgcccttcgtcggcggctccagcacgtacaccgacgacatctcgccggcctcccgttcgcctccggcctccgcctccgccgctctgccctagggctcgctctccggccggtcgggatggctcgggtgctcgggttcgtatggtcgtc
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| CDS seq | atgtcgtcggtgtacgtgctggagccgccgacgaagggcaaggtggtagtgcagacgacggccggcccgctcgacatcgagctgtggccgaaggaggcccccaaggcggtgcgcaacttcgtgcagctctgcctcgagggctactacgacggcacgctcttccaccgcgtcatcaagtccttcctcgtccaggGGCGGCGACCCCACCGGCTCCGGCACCGGGGTTTAGTGGCGTGTGCCAATGCCGGCACGCCTCACTCGAATGGGAGTCAATTCTTTATCAGCCTTGACCGTTGTGATTGGCTCGATAAGAAGAATACCATCTTTGGGAAgAAGgtcactggcgattctattttcaaccttctagccttggctgatatcgagactgataaggatgatcgacctgtgtatccgcagaaaattctttcagttgaggtactctggaacccatttgatgatatTgttccaaggcaacttaagaagactgagcctactgccaagggtgatatcgaggggaaatcaaagaagaaagccgttaagcaacttaatgtgctttcatttggagatgaagtagaagaggaggagaatgaggcagcatcctctgtgaaggacaaaAtaaaaagtattcacgatgtgttggatgatcctcgGtttcttaaaggagaggcaccggatgagcaactgaccaaggagcaagaggacaaaaaaAAggagactgttcaatctgtcagggaggctttagtatcaaaaaaAtctgacttcagagagctagagcatgattcagaaacagatgattatcctgacgatgaaaacgaggaggattttgataacagaatgcgctctcaaattctaaGAaaacgcagggagcttggggacatccgctctagtgaaacctccaaaaaaAcagataaagcacaccgtaaagacaaggagttaccagttcacaggagtgacgatgacaatgatgacGacaAtgaagaccaccagctaaccaagtctagaaaattttctatgaagaaaaaAggcattggctcagaagccagtgctgaaaggatgtccaaaggcgatgctaatttgcagctattgaatccagctgagcaagagaagcatttgcaaaaacagaaaaggcgccgtcttcaaggccgtgaagatgagacgttagcgaagctacagaagttcaaggcatcgtttctcagtaagaaccctgcaactggtaacacagaaaagaagactgatgaagaggattacacagggtggcacagcaaccggctgacttttgaacctgattcttctaaggatggaatgacgaggaaagatgatccagatgactatgtagtggttgatcctctccttgagaaaggaaaacaaaaattcaacaagatgcaagcaaagcttaagcggagagaacgtgaatgggcaggcagatctctgacctga
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| Protein seq | MSSVYVLEPPTKGKVVVQTTAGPLDIELWPKEAPKAVRNFVQLCLEGYYDGTLFHRVIKSFLVQGRRPHRLRHRGLVACANAGTPHSNGSQFFISLDRCDWLDKKNTIFGKKVTGDSIFNLLALADIETDKDDRPVYPQKILSVEVLWNPFDDIVPRQLKKTEPTAKGDIEGKSKKKAVKQLNVLSFGDEVEEEENEAASSVKDKIKSIHDVLDDPRFLKGEAPDEQLTKEQEDKKKETVQSVREALVSKKSDFRELEHDSETDDYPDDENEEDFDNRMRSQILRKRRELGDIRSSETSKKTDKAHRKDKELPVHRSDDDNDDDNEDHQLTKSRKFSMKKKGIGSEASAERMSKGDANLQLLNPAEQEKHLQKQKRRRLQGREDETLAKLQKFKASFLSKNPATGNTEKKTDEEDYTGWHSNRLTFEPDSSKDGMTRKDDPDDYVVVDPLLEKGKQKFNKMQAKLKRREREWAGRSLT |
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| Function | Peptidyl-prolyl cis-trans isomerase CYP57 [UniProtKB/Swiss-Prot:Q6Q152] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0021980 | OsNaBo_01g0021980.01 | Chr01 | 23052005 | 23056815 | - | NAM | ||
| CDS seq | atgtcgtcggtgtacgtgctggagccgccgacgaagggcaaggtggtagtgcagacgacggccggcccgctcgacatcgagctgtggccgaaggaggcccccaaggcggtgcgcaacttcgtgcagctctgcctcgagggctactacgacggcacgctcttccaccgcgtcatcaagtccttcctcgtccaggGGCGGCGACCCCACCGGCTCCGGCACCGGGGTTTAGTGGCGTGTGCCAATGCCGGCACGCCTCACTCGAATGGGAGTCAATTCTTTATCAGCCTTGACCGTTGTGATTGGCTCGATAAGAAGAATACCATCTTTGGGAAgAAGgtcactggcgattctattttcaaccttctagccttggctgatatcgagactgataaggatgatcgacctgtgtatccgcagaaaattctttcagttgaggtactctggaacccatttgatgatatTgttccaaggcaacttaagaagactgagcctactgccaagggtgatatcgaggggaaatcaaagaagaaagccgttaagcaacttaatgtgctttcatttggagatgaagtagaagaggaggagaatgaggcagcatcctctgtgaaggacaaaAtaaaaagtattcacgatgtgttggatgatcctcgGtttcttaaaggagaggcaccggatgagcaactgaccaaggagcaagaggacaaaaaaAAggagactgttcaatctgtcagggaggctttagtatcaaaaaaAtctgacttcagagagctagagcatgattcagaaacagatgattatcctgacgatgaaaacgaggaggattttgataacagaatgcgctctcaaattctaaGAaaacgcagggagcttggggacatccgctctagtgaaacctccaaaaaaAcagataaagcacaccgtaaagacaaggagttaccagttcacaggagtgacgatgacaatgatgacGacaAtgaagaccaccagctaaccaagtctagaaaattttctatgaagaaaaaAggcattggctcagaagccagtgctgaaaggatgtccaaaggcgatgctaatttgcagctattgaatccagctgagcaagagaagcatttgcaaaaacagaaaaggcgccgtcttcaaggccgtgaagatgagacgttagcgaagctacagaagttcaaggcatcgtttctcagtaagaaccctgcaactggtaacacagaaaagaagactgatgaagaggattacacagggtggcacagcaaccggctgacttttgaacctgattcttctaaggatggaatgacgaggaaagatgatccagatgactatgtagtggttgatcctctccttgagaaaggaaaacaaaaattcaacaagatgcaagcaaagcttaagcggagagaacgtgaatgggcaggcagatctctgacctga
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| Protein seq | MSSVYVLEPPTKGKVVVQTTAGPLDIELWPKEAPKAVRNFVQLCLEGYYDGTLFHRVIKSFLVQGRRPHRLRHRGLVACANAGTPHSNGSQFFISLDRCDWLDKKNTIFGKKVTGDSIFNLLALADIETDKDDRPVYPQKILSVEVLWNPFDDIVPRQLKKTEPTAKGDIEGKSKKKAVKQLNVLSFGDEVEEEENEAASSVKDKIKSIHDVLDDPRFLKGEAPDEQLTKEQEDKKKETVQSVREALVSKKSDFRELEHDSETDDYPDDENEEDFDNRMRSQILRKRRELGDIRSSETSKKTDKAHRKDKELPVHRSDDDNDDDNEDHQLTKSRKFSMKKKGIGSEASAERMSKGDANLQLLNPAEQEKHLQKQKRRRLQGREDETLAKLQKFKASFLSKNPATGNTEKKTDEEDYTGWHSNRLTFEPDSSKDGMTRKDDPDDYVVVDPLLEKGKQKFNKMQAKLKRREREWAGRSLT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0021980 | OsNaBo_01g0021980.02 | Chr01 | 23052082 | 23056815 | - | NAM | ||
| CDS seq | atgtcgtcggtgtacgtgctggagccgccgacgaagggcaaggtggtagtgcagacgacggccggcccgctcgacatcgagctgtggccgaaggaggcccccaaggcggtgcgcaacttcgtgcagctctgcctcgagggctactacgacggcacgctcttccaccgcgtcatcaagtccttcctcgtccaggGGCGGCGACCCCACCGGCTCCGGCACCGGGGTTTAGTGGCGTGTGCCAATGCCGGCACGCCTCACTCGAATGGGAGTCAATTCTTTATCAGCCTTGACCGTTGTGATTGGCTCGATAAGAAGAATACCATCTTTGGGAAgAAGgtcactggcgattctattttcaaccttctagccttggctgatatcgagactgataaggatgatcgacctgtgtatccgcagaaaattctttcagttgaggtactctggaacccatttgatgatatTgttccaaggcaacttaagaagactgagcctactgccaagggtgatatcgaggggaaatcaaagaagaaagccgttaagcaacttaatgtgctttcatttggagatgaagtagaagaggaggagaatgaggcagcatcctctgtgaaggacaaaAtaaaaagtattcacgatgtgttggatgatcctcgGtttcttaaaggagaggcaccggatgagcaactgaccaaggagcaagaggacaaaaaaAAggagactgttcaatctgtcagggaggctttagtatcaaaaaaAtctgacttcagagagctagagcatgattcagaaacagatgattatcctgacgatgaaaacgaggaggattttgataacagaatgcgctctcaaattctaaGAaaacgcagggagcttggggacatccgctctagtgaaacctccaaaaaaAcagataaagcacaccgtaaagacaaggagttaccagttcacaggagtgacgatgacaatgatgacGacaAtgaagaccaccagctaaccaagtctagaaaattttctatgaagaaaaaAggcattggctcagaagccagtgctgaaaggatgtccaaaggcgatgctaatttgcagctattgaatccagctgagcaagagaagcatttgcaaaaacagaaaaggcgccgtcttcaaggccgtgaagatgagacgttagcgaagctacagaagttcaaggcatcgtttctcagtaagaaccctgcaactggtaacacagaaaagaagactgatgaagaggattacacagggtggcacagcaaccggctgacttttgaacctgattcttctaaggatggaatgacgaggaaagatgatccagatgactatgtagtggttgatcctctccttgagaaaggaaaacaaaaattcaacaagatgcaagcaaagcttaagcggagagaacgtgaatgggcaggcagatctctgacctga
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| Protein seq | MSSVYVLEPPTKGKVVVQTTAGPLDIELWPKEAPKAVRNFVQLCLEGYYDGTLFHRVIKSFLVQGRRPHRLRHRGLVACANAGTPHSNGSQFFISLDRCDWLDKKNTIFGKKVTGDSIFNLLALADIETDKDDRPVYPQKILSVEVLWNPFDDIVPRQLKKTEPTAKGDIEGKSKKKAVKQLNVLSFGDEVEEEENEAASSVKDKIKSIHDVLDDPRFLKGEAPDEQLTKEQEDKKKETVQSVREALVSKKSDFRELEHDSETDDYPDDENEEDFDNRMRSQILRKRRELGDIRSSETSKKTDKAHRKDKELPVHRSDDDNDDDNEDHQLTKSRKFSMKKKGIGSEASAERMSKGDANLQLLNPAEQEKHLQKQKRRRLQGREDETLAKLQKFKASFLSKNPATGNTEKKTDEEDYTGWHSNRLTFEPDSSKDGMTRKDDPDDYVVVDPLLEKGKQKFNKMQAKLKRREREWAGRSLT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0021980 | OsNaBo_01g0021980.03 | Chr01 | 23052087 | 23056570 | - | IsoSeq | ||
| CDS seq | ctactacgacggcacgctcttccaccgcgtcatcaagtccttcctcgtccaggGGCGGCGACCCCACCGGCTCCGGCACCGGGGGTGAGAGCATATATGGGGCCCCATTTGCAGATGAGTTCCATACGC |
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| Protein seq | LLRRHALPPRHQVLPRPGAATPPAPAPGVRAYMGPHLQMSSIR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 23056158 | 23056488 | - | OsNaBo_01g0021980.03 | OsNaBo_01g0021980.03,OsNaBo_01g0021980.02,OsNaBo_01g0021980.01 | All |
| A5 | Chr01 | 23055934 | 23056047 | - | OsNaBo_01g0021980.01,OsNaBo_01g0021980.02 | OsNaBo_01g0021980.03,OsNaBo_01g0021980.02,OsNaBo_01g0021980.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.459991 | 5.242793 | 8.714211 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0582400 | RBH | 0.911109 | 0.515176 | 3.124065 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g40050 | RBH | 0.605757 | 0.345256 | 0.804494 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0582400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0022960 | RBH | 0.846737 | 13.481140 | 5.225111 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0022560 | RBH | 0.179923 | 1.383692 | 2.509665 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0022890 | RBH | 1.423246 | 18.092503 | 7.128473 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0022280 | RBH | 0.247937 | 0.299928 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0022010 | RBH | 9.931746 | 16.856379 | 13.050578 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0377600 | RBH | 4.5537295 | 8.595798 | 9.86156 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0021960 | RBH | 0.487029 | 1.004860 | 0.802781 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0366800 | RBH | 3.0834915 | 4.5642645 | 6.014015 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0021930 | RBH | 0.512952 | 0.283082 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0021870 | RBH | 0.460768 | 13.705420 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0022140 | RBH | 7.434562 | 5.967737 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0022210 | RBH | 1.370878 | 2.242886 | 1.187046 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0021990 | RBH | 0.585708 | 4.154293 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G022300 | RBH | 0.595086 | 3.531593 | 2.357811 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
