Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0017180 | OGI:01050180 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:16098042-16098788 | ||||||||
| Gene Symbol | PR1-12, OsPR1#012, PR1#012, OsPR1-12 | ||||||||||
| DNA seq | accagctatatatacaaaacaaaagtaagaaagcagctacgtttacaagcggagatggaggcatccaagctagcaatctgcagcttgttcgtgctcgccgtggcagccgccacagtggttcactgctccgatgcccagaactcgccgcaggactacctgtcgccgcagaacgcggcccggtccgccgtcggcgtgggtccgatgagctggagcacgaagctgcaggggttcgcggagagctacgcgaggcagcggaagggcgactgccggctgcagcactcgggcgggccgtacggggagaacatcttctggggctccgccggcgccgactggacggcggcggacgcggtgcggtcgtgggtggacgagaagaagtactacaactacgccagcaacagctgcgccgccgggaaggtgtgcggccactacacgcaggtggtgtggcgcgattccacaaacgtcggctgcgcccgcgtgcggtgcgacgccaaccgcggcgtcttcatcatttgcaactacgagccccgtggcaacatcgttggccgtaggccctactgatcatacgttgttgcaacaagctatacatatgtgccaagcacgcgtgcatcgtccctcgctcgttacatggatgtgTttgcattacatatgtacacgcgctgtgtgtttgtgttatgtcttaattagagggagtaataattaagaacattagtcaaatcaaataagtgaataaatgatgtacttcagctt
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| CDS seq | atggaggcatccaagctagcaatctgcagcttgttcgtgctcgccgtggcagccgccacagtggttcactgctccgatgcccagaactcgccgcaggactacctgtcgccgcagaacgcggcccggtccgccgtcggcgtgggtccgatgagctggagcacgaagctgcaggggttcgcggagagctacgcgaggcagcggaagggcgactgccggctgcagcactcgggcgggccgtacggggagaacatcttctggggctccgccggcgccgactggacggcggcggacgcggtgcggtcgtgggtggacgagaagaagtactacaactacgccagcaacagctgcgccgccgggaaggtgtgcggccactacacgcaggtggtgtggcgcgattccacaaacgtcggctgcgcccgcgtgcggtgcgacgccaaccgcggcgtcttcatcatttgcaactacgagccccgtggcaacatcgttggccgtaggccctac
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| Protein seq | MEASKLAICSLFVLAVAAATVVHCSDAQNSPQDYLSPQNAARSAVGVGPMSWSTKLQGFAESYARQRKGDCRLQHSGGPYGENIFWGSAGADWTAADAVRSWVDEKKYYNYASNSCAAGKVCGHYTQVVWRDSTNVGCARVRCDANRGVFIICNYEPRGNIVGRRPY |
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| Function | Pathogenesis-related protein PRMS [UniProtKB/Swiss-Prot:Q00008] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0017180 | OsNaBo_01g0017180.01 | Chr01 | 16098042 | 16098788 | + | NAM | ||
| CDS seq | atggaggcatccaagctagcaatctgcagcttgttcgtgctcgccgtggcagccgccacagtggttcactgctccgatgcccagaactcgccgcaggactacctgtcgccgcagaacgcggcccggtccgccgtcggcgtgggtccgatgagctggagcacgaagctgcaggggttcgcggagagctacgcgaggcagcggaagggcgactgccggctgcagcactcgggcgggccgtacggggagaacatcttctggggctccgccggcgccgactggacggcggcggacgcggtgcggtcgtgggtggacgagaagaagtactacaactacgccagcaacagctgcgccgccgggaaggtgtgcggccactacacgcaggtggtgtggcgcgattccacaaacgtcggctgcgcccgcgtgcggtgcgacgccaaccgcggcgtcttcatcatttgcaactacgagccccgtggcaacatcgttggccgtaggccctac
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| Protein seq | MEASKLAICSLFVLAVAAATVVHCSDAQNSPQDYLSPQNAARSAVGVGPMSWSTKLQGFAESYARQRKGDCRLQHSGGPYGENIFWGSAGADWTAADAVRSWVDEKKYYNYASNSCAAGKVCGHYTQVVWRDSTNVGCARVRCDANRGVFIICNYEPRGNIVGRRPY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 30.085716 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0382400 | RBH | 1.790388 | 1.668065 | 57.896015 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g28500 | RBH | 1.185463 | 1.098478 | 14.592260 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0382400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0017900 | RBH | 0.0 | 0.0 | 27.382559 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0017560 | RBH | 2.197434 | 0.0 | 16.428846 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0017800 | RBH | 0.553909 | 3.118131 | 52.279751 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0017170 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0017100 | RBH | 4.221112 | 0.0 | 60.033478 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0267300 | RBH | 5.3492845 | 1.209508 | 0.102278 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0017300 | RBH | 0.0 | 0.0 | 4.715775 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0265100 | RBH | 8.7662475 | 0.9114445 | 0.1077175 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0017120 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0017090 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0017330 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0017080 | RBH | 0.453076 | 0.0 | 8.200904 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0016960 | RBH | 0.158054 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G017550 | RBH | 0.0 | 0.0 | 6.476738 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0016680 | SBH | 0.000000 | 0.0 | 0.169651 |
