Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0014520 | OGI:01037660 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:12547914-12552690 | ||||||||
| Gene Symbol | prx15 | ||||||||||
| DNA seq | caatataatctctctctctcagctacacaagtggtagcttactctaaccttggttaattatagtccatggcgagctgcagcaagtggctggccgggctgatgctGCTGgcggcggcgctggcgtgctcgctgccggcggcgagccgggcgcagctgcaggtggggttctacaacacgagctgccccagcgccgaggcgctggtccggcaggccgtcgtggccgccgtcgccaacaactccggcctcgccgccggcctcatccgcctccatttccacgactgcttcgtcagggtacgtctctctccaactcgtacatgtaaaataaagctgcagcttgcttagttaattaacagaaactaaaccTtaatttgctttgaactgataattaggacgaaaaggtttaatttacagtaaagaaaactgcagggaattaacttttagtagctttgatatgaaaaggaacggaaacatatatgcatgcttagcttgctcaattacatcgcttctcttctggtcgatcatctgtacctaaattgatgcatccttggtcgatggagttaggcagcagtccatatgtagtattccctctgttttctttgtgtttgttctgagttagatttatttaagttctaactaagttcataagaaaacaaatacagtaacactgaaaatgctaaattagTtttattaaatttattattcaatatatattttaatagtttgttcgtcttgtgttaaaaataatactattgtatctttttatgaatttaatttggtaagcttaaaagatcaacctgacttagcaaagacttataagacgacttataatatgaataatatgaaatgaaaggatgcttgttggtcatcataaaacagatttgttatatagatgttggaagagaggatttttcctagaaattaacaagaaagagaaggacaaatctagcaactcgcctcgaaggggcagcagtcgccagttatacactgcaccgtagaaaaaaaaaatccataacctcagttttattcattgtgtcaaaaaataattgttacctaatcaatgtgaaccggagaatgtacggtgacaattcgtttgaacggtagcaaggactctcgtacgatggccgagtttagttctaaattttttcttcgaacttccaactttttcatcacatcaaaatttttttacacacacaaacttttaacttttccgtcacatcgtttcaatttcaaccaaattttcaattttagcgtgaactaaacacacccgacgatcgatgctttgggaagcccaagtgtgtgttgtacacgatttctggatttcaaggtacatagacttttcatggaagcagtatgaatgctgccaattggacagtgatagatcgATTttatttctccattttgaaaaagagattgtacgtagattttgaatatccatttttgtatgAaaaaagtactagctaattgtagccagaattacttgaaaataatgtttgtcctaggtcgatggtgattgctcggcaattctagctaatcaaacaggtgaaaacatgtggttgaaattacagcttaacttggtggaagcttgaaatatttttcatttaaaagttctaagaaataaaaaacaaattcccatatgtagaagttgatacgtattatgagacaatcatagaaagtttcaagaccaaagtctactttgcttgtgagataattagcAaaaagagatgtttccagaaaaaataaatggtaaagaaaaatattatggttcttaagaaaATaCtttaaggtaacctaacttttctactaacaatgataccacgaggtactaataacttgaggtaccattttgcaccggaaaacatgatatgtacctttctatactttctgaagaatggtaaaattattcgcaatgaaaaacatataTttctacTttttatcTtttttttttgtcgtctgccagtttcatatataaaaaatgaagttcagttccagcttAaaaaaaaggaatattgagttaagtttcctcttgaaaggttggtcatatatgtgaaatatggtttcgagaacattttagaaactggtttaatttctttgcttccaaactagatagtgattacagccgtacacatttacaaatttacacatcacagacacgtaacataggcctaatcagtagctatctaattaatttagcagtgatatgtacctttagatgatgtgcatcttatatgccgagtttgcaaacatgatatatcaaaggtcttcttcaatttgtatgacatagatattgataTtttttacctactcatttataagtggtttcgcgggtcgactcatttgcacccgtgtatagtagaaataaatcgataaccaacctatttgtttgtggagtattacgtaagtgttttcactggtcgactcacttgcacccatGTATAgtatatatatatataaatgtggaaccaaccattatgagtgatttcacggctgattaattccacttgcatacttagccgggaccctgggaccctgctacgtgcaaagagcacacgaattgatgtttccccggtttaatggggtagctatagatacatcaatatgtgaacggattaattaattggatggacggctgctgtcgtactttgtttgcttatctatatctagattgaccaacatttgaggatcacgagtacttactacgaacaatcagacatggTAtatattcgtttataactttgcatatagagatggggtaataccatgcatacatatatatatgccattgatcacgtcgagaaaggaagaaatatttatcggccttaactcaaagcatgcgtttgccatctttcatctagatctaattccatcttccaagtccctaattatggatgggagataggggatcttccatttgcaaaagaatatcttaactactatgctgagagggAggtgtaacaatacattataatttattactaacttagtacgtactactagggatgatttgagtttcccgTACTtactatagtatatctgcatgggatatatagactcatgcatatacatgtaacatgttaatcaggagtgtttacctatctttttagacaatacgaaagttataTatatagttattcccatatttatagttactaccttcaaaatcttatttaattcttttccaaaaaactcttatttaattattaatttaagaaagTTTAtttatgtcgtcattggttaggggtgtgacgcatcggtgctgatcttctcgccgaacggcacggcggagcgcgacgcggcgccgaacaacccgagcctccggggcttcgaggtgatcgacgccgccaaggccgccgtcgaggcggcgtgcccgcgcaccgtctcctgcgccgacatcctcgcgttcgccgcccgcgacagcgtcaacctcaccggcaaCTacttctaccaggtccccgccggccgccgcgacggcaacgtctccatcgacaccgacgccttcacgctccccgggccaaacctcacggcgacgcagctcgtcgacggcttcaagctcaggaacctgaccgccgaggagatggtcatcctctctggctcccacaccatcggccgctcgcactgcgcctccttcctcttcaagaaccgtgaacgtttggtacgtgagaaaagaaaacttttacatttacattaaaaggatgtctgcattttgttttcgtgccatcgaaataattactaattttttaaaataattaacaatataaatcagtactcctgtattaccaatcataacatattccttctatctcataaaaaaggtttgtttttatgagactaggttcgtttttatgagATaaaggaaggataagtttaaatttaatatctatgtatacataatataaaaaaacatgactattgaaataatacgtaataaatggaatatatagAaaaatatcagttttactattagctagtttcattttaatcgtacaaaattcttttccgcacaccattggaaaattcatgtttgatgatcttacggtgatatactgatatctaattaatgatacaattatgtgcgatcattttgtaggcaaatgggacgattagcccggcgtaccaggcgctgctggaggcgctgtgcccgccgacgacggggcagttcacgccgatcacgacggcgatcgacgtgagcacgccggcgacgctggacaacaactactacaagctgctgccgctcaacctgggcctccacttctccgacgaccagctcatccgcaacgccacgctcctccccttcgtcgacgccttcgccgccaacgagacgctgtggaaggagaagttcgtcgccgccatgatcaagatgggcaacatcgacgtgctcaccggcgcccggggggagatccggctcaactgcagcgccgtcaacccgtcgtcgtcatcctccgccgggatgatcgagaccatcttccccggcgccggcggtgaggtcgccgcgagctaagctatataccttgctgaccatataatatacgtcatatatatgatgatgtaaaattaataatgcatgaccgcacttgcactgtgtgttgtacgtacggccagggcgggtcgtctggTttgttgataattgatatgaaggctttgtttgcacctacttgatgtgtgtagtagggcagcgtatcgtatgcacacagctaggtagatgcactcatgtacacacccatcctaagcctttggatcaacatcctacggccaagaCcccgagtgtggtatttttgcaatt
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| CDS seq | atggcgagctgcagcaagtggctggccgggctgatgctGCTGgcggcggcgctggcgtgctcgctgccggcggcgagccgggcgcagctgcaggtggggttctacaacacgagctgccccagcgccgaggcgctggtccggcaggccgtcgtggccgccgtcgccaacaactccggcctcgccgccggcctcatccgcctccatttccacgactgcttcgtcagggcaaatgggacgattagcccggcgtaccaggcgctgctggaggcgctgtgcccgccgacgacggggcagttcacgccgatcacgacggcgatcgacgtgagcacgccggcgacgctggacaacaactactacaagctgctgccgctcaacctgggcctccacttctccgacgaccagctcatccgcaacgccacgctcctccccttcgtcgacgccttcgccgccaacgagacgctgtggaaggagaagttcgtcgccgccatgatcaagatgggcaacatcgacgtgctcaccggcgcccggggggagatccggctcaactgcagcgccgtcaacccgtcgtcgtcatcctccgccgggatgatcgagaccatcttccccggcgccggcggtgaggtcgccgcgagctaa
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| Protein seq | MASCSKWLAGLMLLAAALACSLPAASRAQLQVGFYNTSCPSAEALVRQAVVAAVANNSGLAAGLIRLHFHDCFVRANGTISPAYQALLEALCPPTTGQFTPITTAIDVSTPATLDNNYYKLLPLNLGLHFSDDQLIRNATLLPFVDAFAANETLWKEKFVAAMIKMGNIDVLTGARGEIRLNCSAVNPSSSSSAGMIETIFPGAGGEVAAS |
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| Function | Peroxidase 1 [UniProtKB/Swiss-Prot:A5H8G4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0014520 | OsNaBo_01g0014520.01 | Chr01 | 12547980 | 12552408 | + | NAM | ||
| CDS seq | atggcgagctgcagcaagtggctggccgggctgatgctGCTGgcggcggcgctggcgtgctcgctgccggcggcgagccgggcgcagctgcaggtggggttctacaacacgagctgccccagcgccgaggcgctggtccggcaggccgtcgtggccgccgtcgccaacaactccggcctcgccgccggcctcatccgcctccatttccacgactgcttcgtcagggcaaatgggacgattagcccggcgtaccaggcgctgctggaggcgctgtgcccgccgacgacggggcagttcacgccgatcacgacggcgatcgacgtgagcacgccggcgacgctggacaacaactactacaagctgctgccgctcaacctgggcctccacttctccgacgaccagctcatccgcaacgccacgctcctccccttcgtcgacgccttcgccgccaacgagacgctgtggaaggagaagttcgtcgccgccatgatcaagatgggcaacatcgacgtgctcaccggcgcccggggggagatccggctcaactgcagcgccgtcaacccgtcgtcgtcatcctccgccgggatgatcgagaccatcttccccggcgccggcggtgaggtcgccgcgagctaa
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| Protein seq | MASCSKWLAGLMLLAAALACSLPAASRAQLQVGFYNTSCPSAEALVRQAVVAAVANNSGLAAGLIRLHFHDCFVRANGTISPAYQALLEALCPPTTGQFTPITTAIDVSTPATLDNNYYKLLPLNLGLHFSDDQLIRNATLLPFVDAFAANETLWKEKFVAAMIKMGNIDVLTGARGEIRLNCSAVNPSSSSSAGMIETIFPGAGGEVAAS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0014520 | OsNaBo_01g0014520.02 | Chr01 | 12547914 | 12552690 | + | IsoSeq | ||
| CDS seq | atgcatgaccgcacttgcactgtgtgttgtacgtacggccagggcgggtcgtctggTttgttgataattgatatgaaggctttgtttgcacct |
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| Protein seq | MHDRTCTVCCTYGQGGSSGLLIIDMKALFAP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr01 | 12548204 | 12551998 | + | OsNaBo_01g0014520.02 | OsNaBo_01g0014520.01,OsNaBo_01g0014520.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 2.827649 | 5.294785 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0327100 | RBH | 5.273015 | 7.575571 | 14.638708 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g22352 | RBH | 2.649466 | 3.646308 | 2.755141 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0327100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0015040 | RBH | 0.0 | 6.184137 | 4.679199 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0014830 | RBH | 0.000000 | 2.032136 | 7.546713 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0015070 | RBH | 0.0 | 2.856162 | 3.928555 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0014540 | RBH | 0.0 | 0.061885 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0014610 | RBH | 0.0 | 0.000000 | 10.493625 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0208900 | RBH | 4.6486635 | 1.880585 | 1.226524 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0014530 | RBH | 0.0 | 0.0 | 0.775382 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0205100 | RBH | 8.062339 | 2.0586785 | 0.835846 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0014550 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0013000 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0014540 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0014650 | RBH | 0.797151 | 0.271167 | 1.260076 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0014360 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G014720 | RBH | 0.0 | 0.0 | 2.288534 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0014510 | SBH | 0.0 | 13.779379 | 0.829956 |
