Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0014480 | OGI:01037540 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:12494673-12498896 | ||||||||
| Gene Symbol | prx12, PRX12, OsPRX12 | ||||||||||
| DNA seq | ggatcagtgtggccaagcagaagcagcacacacgaacactcgaaacaccgctcctgcttcaaattcgcatggctccgagaggcagctactgcaggcgggtgatgggcgtggccgtcgccgtggcggcttgcgcgctgtgcctcctgccggcgacgaccagcggcgcgctccgcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccgccaggccgtcgccgcggccttcgcccgggAcgccggcgtcgccgccggcctcatccgcctccacttccacgactgcttcgtcagggtacctactactgaaacccagctagtgcatatagtagtataatgcagaaattattgaccaccatctccatgaatatctgtttgtataatgtttatagaagcacatgcatatacgtatatgcctgcaaaatgtctggcttgcaaacgggaaataatcgacttatgtttgatgtgcttaacttttttcttaagacaatgtttaactaaacacttgagaacagctagcccagattttcccagttggggaaccaaaataaaacacttattttgttaatgatgattagtttatctacttttcacaaattaatcctgaagatttgaattttctaatatgttggcgatctgcatatttgccacattattagaaactggatcgagtaaacatctacccaactaaacttattcaggtctatgctccatctatgcatagctcatacaaatacttaaattggaaaagaactcaacaatttttcaaaatagttctttgcaagttagtttccatgaatccttacatgtgtgaggatcaatatatgcacggtgaaaatggacttgtagggggcttttgacatctctctctaaatctgtaattgtcgtttgtgttgcttttcaattagttttactaattaatatcatgtctgccttgggccttggctagcttaTttttatgcttctccgttgctaacttgagcttaattacctcttttcaaccatgcatccctcaagcgatctaccagcagtattgatttttttcatttacttttcgtccccagaatgcatgaattaagctattaatttaagactaagaccaccagcaaatattcaagtactagtatttagattttccatagaaaagatatatttgtcatcacaccaaattaaattaagAactacacgcaaaaaaaaagaactttgattccattgtatatttaacaaaatctatcgatatacTtttgaaaaagataatgctcaaacatgtgtctaaaaatgaagacattaaagaacaattaaagagaccctggtcatgcttaatgaaaaccaaaaaaaggtagagttgtctctgaagacaaagggaacaaagttaaaagccataaaagaaaagctaccaaaatcagaaagcataagtgtatatagttacagaatcaaagcagctttctttctttcaagggaaccgcatataccctgcTtgcaatgggtgacaaacAaaaagcctcccaggctcccatttggcgaatctcagtatgttcctttcgtttcctcaatccccattgatccttcattttttcaggtgtcgtattaacatccagtactgcttgacactggcagtcgtaaatatgtactccttagtttgatagtatcaaaaatggtatttaactcgttgaatatcatattttgatggaacaataaggtgtgatttagttcaagtcttcaagagtataatAaggatgtgttcgtttggcgacaggaatgctccctctcggcacacaaaatagagcggcgaaatagcgcatgattaattaaatatttacataaacaaacttaaaaaATaaattaatatgatttttaagcaactttTCtatagagaaaagtttttgcgaaaatcgttgagcagtttagaaagtagaaagtatatgcaccgaaaatgaggagacagaagaagttgagaaaatgtggtatagactacaacttaagatgtactttagtctatgtagagctaggcaacatatatatgacacaataggaggttaatggccggagtttacagcacgtgtatgtagaggagtaatgtagttgactatgtcactaggaggtggaagaagggacgtgacattggatctaacgatgcgaaacatggacggagtcacaaatcaggttggaggagcttctcgctgaaaccagaaataagctaggaggtggaggaaggggttggtatgttgtccttaataagagctaaaatcgattgattatttgttttttacagctatttaaggttataaacaaatAaattagctattaaaaagttggaaaaatattttataaattttctagtagaagatcgagtaggatagaggtgaaatgaatcttctagtaatAatgcctcaaaaaattctagtcgacctcacacaataaaacaataagcatgttagttaaactgagcattactAaaaacatattaatttgtttgtttggattacaataaagacgtagacatgtacacatagctatattagttaaaccgggtgtcatcaatttacctgttgatttgaatatatagttgtaagcttcttcagtactcccttcattccataatatgtactcccttcattctataatataagagtcaaacttggcacagtctataatttctcatatactataaggtttaaacaaaattataaccatcttaaagtaaatttaaatgtcaatctaatgatattaattttagcaaatgaaatttaatttatattataataattgttggtcaaatgtttttAtttatgaattttggaatatgtgcacaccttatattatgggatagatggattatattttttaaaatacttcagtaatcagtcagtgctagaatttacacaagcatgtactatctacatactctctccgtcccataaaaaattaacctaatatTGGAtgtgacacatcctaatacaatgaatctagacattgtactagattcacttttttctgggacggatggagtacaagatgaaacaTtttgagttaccttttttttttCTtttttctgaaagaaattccttcctgttactgcaatgcaGgggtgtgatgcatccgtcctcctgaccaagaaccccgccggtggccagacggagcgcgacgcggcgccgaacaacccgagcctccggggcttcgaggtgatcgacgccgccaaggccgccgtcgaggcggcctgcccgcgcaccgtctcctgcgccgacatcatcgcgttcgccgcccgcgacagcgtcaagctaaccggcaacgtcgactaccaggtccccgccggccgccgcgacggcagcgtgtccaacggcaacgaggccctccacaacctgccccCGcccaacgccacggcgcagcagctcgccgacacgttcttcgccaacaagttcctcaccctcgaagacatggtcgtcctctccggcgcccacaccgtcggccgctccttctgcgcctccttcttcaaccgcgtctggaacggcaacacccccaTAGtacgtcgcctcgccgcgccgccgtcgtccatggcgccccccatgctttttcgcagttacgcggtgtgacggtgcgtgcgcgtgtgtgtgcaggtggacgccgggctggacccggcgtacgcggcgcagctgcgggcgctgtgccccacaagggacacgctggcgacgacgccgatggacccggacacgccggcgacgctggacaacaactactacaagctgctgccgcaggggaaggggctcttcttctccgacaaccagctgcgggtgaacgccaccatgaacgcgctggtgacccggttcgcggcgaacgaggcggagtggaagcagcggttcgccgacgccatggtgaagatgggccacatcgaggtgcagaccgggcggtgcggccagatcagggtcaactgcaacgtcgtcaacccgtcgacctcctcgccggaggtcgagctggccggcgaggatcaggagaccggaggcgccgtcgcggcaagctagctagctaaccaatctaatcatgcatgtcggccgttggatgcgagtgatttcctttaatttcctttttttgacgtgcacgaacatttaatttgcgtgtactagtgtcgtcgtgtcgtgtcgatcgatctttcgtacgtgcatttgctcttggaatgttttaggtcggattccagtgatgaagaataagtactacgtatg
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| CDS seq | atggctccgagaggcagctactgcaggcgggtgatgggcgtggccgtcgccgtggcggcttgcgcgctgtgcctcctgccggcgacgaccagcggcgcgctccgcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccgccaggccgtcgccgcggccttcgcccgggAcgccggcgtcgccgccggcctcatccgcctccacttccacgactgcttcgtcagggtggacgccgggctggacccggcgtacgcggcgcagctgcgggcgctgtgccccacaagggacacgctggcgacgacgccgatggacccggacacgccggcgacgctggacaacaactactacaagctgctgccgcaggggaaggggctcttcttctccgacaaccagctgcgggtgaacgccaccatgaacgcgctggtgacccggttcgcggcgaacgaggcggagtggaagcagcggttcgccgacgccatggtgaagatgggccacatcgaggtgcagaccgggcggtgcggccagatcagggtcaactgcaacgtcgtcaacccgtcgacctcctcgccggaggtcgagctggccggcgaggatcaggagaccggaggcgccgtcgcggcaagctag
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| Protein seq | MAPRGSYCRRVMGVAVAVAACALCLLPATTSGALRVGFYQSSCPNAEALVRQAVAAAFARDAGVAAGLIRLHFHDCFVRVDAGLDPAYAAQLRALCPTRDTLATTPMDPDTPATLDNNYYKLLPQGKGLFFSDNQLRVNATMNALVTRFAANEAEWKQRFADAMVKMGHIEVQTGRCGQIRVNCNVVNPSTSSPEVELAGEDQETGGAVAAS |
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| Function | Peroxidase 1 [UniProtKB/Swiss-Prot:A5H8G4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0014480 | OsNaBo_01g0014480.01 | Chr01 | 12494673 | 12498896 | + | NAM | ||
| CDS seq | atggctccgagaggcagctactgcaggcgggtgatgggcgtggccgtcgccgtggcggcttgcgcgctgtgcctcctgccggcgacgaccagcggcgcgctccgcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccgccaggccgtcgccgcggccttcgcccgggAcgccggcgtcgccgccggcctcatccgcctccacttccacgactgcttcgtcagggtggacgccgggctggacccggcgtacgcggcgcagctgcgggcgctgtgccccacaagggacacgctggcgacgacgccgatggacccggacacgccggcgacgctggacaacaactactacaagctgctgccgcaggggaaggggctcttcttctccgacaaccagctgcgggtgaacgccaccatgaacgcgctggtgacccggttcgcggcgaacgaggcggagtggaagcagcggttcgccgacgccatggtgaagatgggccacatcgaggtgcagaccgggcggtgcggccagatcagggtcaactgcaacgtcgtcaacccgtcgacctcctcgccggaggtcgagctggccggcgaggatcaggagaccggaggcgccgtcgcggcaagctag
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| Protein seq | MAPRGSYCRRVMGVAVAVAACALCLLPATTSGALRVGFYQSSCPNAEALVRQAVAAAFARDAGVAAGLIRLHFHDCFVRVDAGLDPAYAAQLRALCPTRDTLATTPMDPDTPATLDNNYYKLLPQGKGLFFSDNQLRVNATMNALVTRFAANEAEWKQRFADAMVKMGHIEVQTGRCGQIRVNCNVVNPSTSSPEVELAGEDQETGGAVAAS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 8.287650 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0326000 | RBH | 0.176788 | 0.0 | 0.972441 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g22230 | RBH | 0.110142 | 0.0 | 0.211000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0326000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0014990 | RBH | 0.0 | 9.325894 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0014790 | RBH | 0.0 | 5.455567 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0015020 | RBH | 0.0 | 8.060235 | 0.478741 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0014500 | RBH | 0.0 | 0.169361 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0014570 | RBH | 0.0 | 56.466831 | 0.828392 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0208400 | RBH | 5.200448 | 23.3977145 | 10.953752 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0014490 | RBH | 0.0 | 0.225611 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0204600 | RBH | 5.6105385 | 0.377207 | 23.072135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0014510 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0013000 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0014490 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0014610 | RBH | 0.174716 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0014320 | RBH | 0.0 | 5.725554 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G014680 | RBH | 0.0 | 0.991927 | 1.845894 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0014490 | RBH | 0.0 | 0.0 | 0.0 |
