Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0008670 | OGI:01022060 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:7064339-7065741 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagtgccggggaggtagcgagacacgagctgggccagggcaccaggcggcgatcttgcgctgacacgccggcggggaggtgccgagcctggagccggcgagggcgcaaggtaggcaggcagcggcgcagtggccggcaactacacaacttgcagcagcaaccggtgattgaagttaaatttggtagcctactaacctctaatactaatagacagtctaaaattgtgcctcaatagttcaagttaagtgagatagtgattgaaatttataattgtttctgtacatttatagattgtcagcatgtcaaaaagaacatggttcacgtattataatagttcaagcaacactatcagtgatccctaggtctctaaattatttgaattcgttagtttgcctttttctttgtatagattattactcatgaagaataataggcaattgggtgtgacatatTAtctattggacattagtttggtatggacaaaattctctacatatcattaattcaatgtatgtgtagccaatttatatgtgatacatgttttgatttatactagcatagtttgtccagccccactattatattattttttcctggatccacAGagctttttgctagcgatcaggttttggcctactccttaattttcgcccaaagttccttgtactagaacactctccggtagttcggtttctctcctctcgaatttcggcttacaacaaggaaaagaaatggaacttactccaatgtagatgggtgttcgtttagactcaagttcacacgacgatgaataggaaagtaaatcgtcaatttcagtctaaaacgagaggtgcatatgaccgtttggctctttagaagcAaaagcggtacaggttattagAaaaaataacttacgaataaaattttTAtatatatgtttgtaacgatcaattaaaaacaaatacagtaaaataaactacgataaaaaaatcataaaatcgaaaataaatttttaaatttAaattttggcttataagagttagaagaagcgaaacgatggaagcataaatttgtaaacgaacagcagcacgatttccgcagcaagtatccacagtagaataccaagcaggcgaggcggcgacgacaacgacgacgaggaggctgcgtcgacgaccgcgacgatgcccggagcttgccatcgtcaaccgcggccatctgcgccccgcggcgctcgtcggccgccgccgcgagctgctgtcgctgatcgctctcctctttgagccgccgctcctcctcgagtctcgccacgaacttctgcctccggtgctcgggcatgcggcgccagtactcctccctcaccctggcgatcagcgaccggacctcctcccttgtcgccggcgccgtactccggccaccgcgccat
More
|
||||||||||
| CDS seq | atggcgcgtacggcgccggcgacaagggaggaggtccggtcgctgatcgccagggtgagggaggagtactggcgccgcatgcccgagcaccggaggcagaagttcgtggcgagactcgaggaggagcggcggctcaaagaggagagcgatcagcgacagcagctcgcggcggcggccgacgagcgccgcggggcgcagatggccgcggttgacgatggcaagctccgggcatcgtcgcggtcgtcgacgcagcctcctcgtcgtcgttgtcgtcgccgcctcgcctgcttgccgaaattcgagaggagagaaaccgaactaccggagattgccggccactgcgccgctgcctgcctaccttgcgccctcgccggctccaggctcggcacctccccgccggcgtgtcagcgcaagatcgccgcctggtgccctggcccagctcgtgtctcgctacctccccggcactag
More
|
||||||||||
| Protein seq | MARTAPATREEVRSLIARVREEYWRRMPEHRRQKFVARLEEERRLKEESDQRQQLAAAADERRGAQMAAVDDGKLRASSRSSTQPPRRRCRRRLACLPKFERRETELPEIAGHCAAACLPCALAGSRLGTSPPACQRKIAAWCPGPARVSLPPRH |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0008670 | OsNaBo_01g0008670.01 | Chr01 | 7064339 | 7065741 | - | NAM | ||
| CDS seq | atggcgcgtacggcgccggcgacaagggaggaggtccggtcgctgatcgccagggtgagggaggagtactggcgccgcatgcccgagcaccggaggcagaagttcgtggcgagactcgaggaggagcggcggctcaaagaggagagcgatcagcgacagcagctcgcggcggcggccgacgagcgccgcggggcgcagatggccgcggttgacgatggcaagctccgggcatcgtcgcggtcgtcgacgcagcctcctcgtcgtcgttgtcgtcgccgcctcgcctgcttgccgaaattcgagaggagagaaaccgaactaccggagattgccggccactgcgccgctgcctgcctaccttgcgccctcgccggctccaggctcggcacctccccgccggcgtgtcagcgcaagatcgccgcctggtgccctggcccagctcgtgtctcgctacctccccggcactag
More
|
|||||||
| Protein seq | MARTAPATREEVRSLIARVREEYWRRMPEHRRQKFVARLEEERRLKEESDQRQQLAAAADERRGAQMAAVDDGKLRASSRSSTQPPRRRCRRRLACLPKFERRETELPEIAGHCAAACLPCALAGSRLGTSPPACQRKIAAWCPGPARVSLPPRH |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g12780 | RBH | 0.011861 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0009160 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0008810 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0009180 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0008700 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0008770 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0008750 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0115200 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0008590 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0008820 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0008640 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G008790 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
