Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0007930 | OGI:01020620 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:6395483-6402481 | ||||||||
| Gene Symbol | OsDJ-1A, DJ-1A | ||||||||||
| DNA seq | agctcgttcaatgcgcccggtgtctcctcctcccaactacatacccccgcaatctcgctcgctagctcgctgatcgatcaagctcaagctcaagctagcttcggtcgtcggcaatggcggcgcaggcgtctcctccaacgaagaaggtaacatatgatgattataGTgtgtgcatgttcgcgcggagtgtttgattcgatcgtacgcgtgtgcaggtgttggtgccgatcgtcgccggcacggagccggtggaggcggcggtgcccatcgacgtcctccgccgcgccggcgcggacgtcaccgtggcttccgccgatgatggcgagctggtcgtcgaggtcatgtacggcgtcaggatcgtcgcggacgcgctcgtcgccggcggcgactgcgccgccgctcacttcgacctcatcgtcctcccggtacgtacaatatattgcggccaatggcgacaccgatggatgcggcatggaagaagctcatcttgaattctgcgagatatgccgcgcgcagggaggggttccaggcgcggcgaacctcggcggatgcgcagcgctggaagccatggtgaggaggcacgcggcgaccggaggtctctacgccgccatctgcgccgcgccgccgctggcgctggcgtcctggggcatgctcaacggcctcaaggttgctaaagctagcaagtggtcactccagtccactgctcactattgctattctccactatcacaattcactgcttaaattccagctggttttttttttctaaaattatactccctccatttcaaaatgtttgacaccgttgactttttagtacgtgtttgaccattcgtcttattcAaaaaatttaactaattatttattcTtttcatatcattcgatttattgttAaatatactttcatgtacacatatagttttacatatttcacAaaaaaaatttgaataagacgaacggtcaaacatatgctaaaaagtcaacggtgtcaaacattttgaaacggaggGAgtacataggtacttgagatatactccatccgtttcaggatataagacgttttaactttggtcaaagtcaatCTGctttaagtttgattaagtttgtagaaaaaagtagtagcattttcaacctagttaaatttaaaacagtttaactttgattaaagtcaaaacgtcttataaactgaaacggagggataagtatttaccacaaaacacatgtttaacagacgacctcaaagaaacgaagggtgtcggtaaatacctaatctcactaaatcatgtccataatttaaaacacgtgtacgttttgacatggagtattttttaagaaactgtatacttacataaaatacttcaccgattgatttacatgtattcaattagataaaaaatggttatggaaccaagtaacaaattaatgtttgttcaaaagattaaaaataccacatagtggaacattttgccattatctagaaaaacagaacattttgccataaaaggattcctcaaaataaattataataaacggtgtttgcgttttcctcattttatatatgaaatttactctacAGagagagaaggcaccaaaactgtggtgcaaaaaggtttggggcatttgtaaatttgccaccggttttcaattttgcaacgatgccactcgaatgatagttctagtgatatttttataattttttagtggcagtcttgcaataacgattcaaaacagtggtaagtttgcaattgcctcaaaggttttaaagttgagctatgatggtgtacgcacctacactcctagtaagctaattttgaaatacacaaaattaaccacaaatcgttaatttattaaccatgattcataaccgtcaaatatgatatgtctttgcatgatgaaggcaactgctcatccgctgttcgtggacaagttcccaccggaggtggccgccgtggatgcgagcgtggtggtggacgcgagcgccgtcacgagccgtggcccggcgacgtcgacggagttcgctctcgctctggtagagcaactctacagcaagaacaaggccgagcagatcgcaaaaaaaatggtaattaattatatatatggttctactaactttggcacttgattaatagctacctaactccgtcttagagtatagcacttaaagatcggatgtctcatccaattttaaactgttagattgctatattctagcacggaagtagtaaaattTCtctcattggatcttacccattgttactcttgttgaTtttttttttttaccatggcaagacctgtccattaattgttaagattttgaaaaatgtttttgtttgaatttttatttttaaagtaagattggttaggctgctagctacttccttcatcttgcagtatcaggcttgtaagcatcttgatattcaacttttaaaattattgaccaacaataatcagtctaataaaagtcaaattttatttgatgagaataatataattggattgatatttaaatcccctttcctactatagttgtagaatatgataaactaaaagttaaagattagttttataaaccaagctaaatttgaccgcgtattatttggtgggaaaatggtgtggtacctcctatttttaatatatgatactattgtcttttttgaaaaaaaaattgaccaacaatatttatttatttagatctctgatcaaaagtactttaagcatggctagtatgtttgcctatttacataaatatttaaaagAaaataatagccaaacgaattagaataatcatattaaaagacaggtatttttagtttactatcaaatgggtgctaacattttcgacaaagttgtgtttggtatgttacctgaagtagtaaacgaccatggtccatggactatgccaaacttaactaaattacataatctggtaatctatatatttatataagcaagtatatatactctctatatataGGtggaccAaatagactatAattaaGcttggttttttaagagtatatggagtacatctgCccatgTacgtctatattcattattatattcattattagttttttttaagAAGAaaTgaactcgagAaatataggatactcccttcttgtaaaggaggtcgttttggacagcgacacggtctccaaaacataattttgacttcttatttctataaaaatatTTAttgacaagtgATatatatgtatacttttcaagacaaatctattcatataatttttacattttcaaactcaacaacttaagagttAttcatgatttatacatctgcccatgtacgtattgtcggagatatgggcccggggatatgcgaagtgaGgggagtttaccttcccatcctgtcacgtgaccctacagcctggccctacccccgcaccccacgaatcgcaggagcggcccgaggggcctcggggtgccacgtcatgccccttgggccctcgcgtcgctttgccccgaggccctcgcccggctgccatctaacGgggggagcaagcggggagggggcccaggctgaactgcctttaatgcgcacagcaccccaactgccccttgcGGgcagacgtgcggcgtgcccgactggcgtgcgtcagttaggaatgaccggtctgtgaccggcctgtcgccggtcacgtctgactggacggacggccgtgcccccacgtcgtatctgtctccggtagagtggaggtaggtatgacccgtcccatcggagggtcattcggagctctatccacgagaGagcGgccaccacaagtcttcacccattaatgagggaatgacagggctgccccccatgtcaggcGggggacggtgctgggccccactcaagaacgagctgtggcttagcttccaggcgaaggcacgagtcgagatccggtcaaggtagggtgggtccccacccagtagaagagtaggtagaggcggtgcatgtggtatccccttgagctataaaaggaGgaccttgcccaccgagaaaagggggacgactctcagaaaacctgggctctaggagaagaggaccgagaacgctctccggagtttaggaacctttgtaactcttaccctgaatcccacacacaggagtagggtattacgcttcatagcagcccgaacctgtataatcttgtcgtgtacacgctgcctagcagccttcagggcggatacgtgatttctagaggcgagctctttcccccggccgaactcacaaaaggggatcccacgatctcccgctagagaggtttacatgattagtttttttagaagaaatgaactcgagaaatataggatactcccttcgtacttgtaaaggaagtcgttttggacagcgacacggtctccaaaacacaattttgacttcttatttctataaaaatatttattgacaagtgatatatgtatActtttcaagacaaatctattcatataatttttacattttcaaactcaacaacttaagagttattaatgatttatattttcaaggtttgacttaaacattattctaaacaactttctttacaagtacggaaggagtaattaggacacagttactcgtttccaggaatgggtggcataatttatgaggaaatggacggtacattgcggcggtctaataattgtctaacgttgtattgaatgttcacttcacatgtgccgttgtcagctcaaaatcggttgtgaaagtcagggcaggaatttattgtctagataagccctcatggcctcatggtcatatgggccatatgccgatagctgttgatacttgatagtatgatggtgtgtgttgactgctgctatggtcatggggccaaatgtttctgaaatgcagtcagagaacttcatgagcactagaacggaatatactgaaaataaatactccataTtttcccacctactccatataatacttattgggttgaaataaaattctatatggtcatacttggataatatgtcatactaatttgtatagtatttgcgatttcgttgctAaaaaaaaccataggcgatccctgatgtgctctcttttttttaaaaaaaaatcattgctaaaataagtgtggttaaattttaaatgtgaatatagtagttggattatttgagatcttcttttttttagaaaatagattaaaacttgacctctatatctaacacagatgtacgcagctaaggtGgattatttgtgaatgaaacatacacgacaaagttctgcaattgctctcttcaaaccctaaactcgtgctaatagttcattaagaaatgtactccccaattctAaaatatataagaatctagaaccggataagacaTtttttttataTtttaggatgaagatagTAtacattaattaattttaaaagtagtcagtgtaccaagccagtctacttgatttgactatgataggacttttggagagtgtagtagtacttatataagagAaattttacggtcgttgagaaggtaccgatagtgtaaattttcataaattaattaacattggaaaatgttattgtaataTATtGtggagcattcttttaaacaaacaaattccataatacaagtgttgacaaataggtggaccagaaattaatcaacaaagttaccttgtccacggtcccacccatcaactacctaggactaggaagctggcatttgtaagcatggcagatttgagctctgctccttgactcatcactttatgaacagcaaatcatcgccccccccccccccccttttgttgtttttactgtcatagcttgatcaacatatgagttaactccctatatctcgtgcctcaaattgtcagcttgtcagatacgatgctgggtataccatcgatgaagtcaactcggttcaatggaaatgtaacggcacgcccaaggtacatatacaagagatgaaacctaaacacttatcttaacactagctagcatttcatacctcataagtgatcgatggagctcttccaaatcaccatggagagAaaaaaaaaaggatagcatttcttatacaatataaaagccagaacttctctgaaaatttgcctctgttttgtgtcaggtccttgttccagtagccaatggcaccgaggagatggagctgataacaatcatcgacgtcctgcgcagagccgacgcggacgtcgtcgttgcgtcggcggaaaacgccggcgtcgagatcgtcgcgcgccacgggatgaggatcgtggctgacacgacgctggacgaggcggctgccgatgatcagacgagcagcttcgacctgatcatcctaccggcaagcagcaaacacgaactctcgctgtccaaacccattttgatctgaacatgttcagatcactgaacgtctgaacactttctctcctcgtctcaaacaacagggtggcacgcctggcgcgaagacgatgagcagcaacgagaagcttgtcgctctactgaagaagcaggcggcggcgagcaagccctacggcgccattggcgccgcgacggctcatgtgctcgagccccacggtctgctccaggtaaattaaagaacattagacaagatcgcttgcttttgatcagtgatattctgtcgagacctgacacacatcgagcggccgcgcgattgatttcagggcaagaaagcggcggatcaggatggcggcgacgagtgcgagagcagagtggtggttgatgggaacgtgatcacgagcggaggcaccggcaccgccatggagttcgccgtggccgccgtcgagaagctgctcggccgcgacgtggcgcagagggttgcggaaggcttgctttttgcctgatcgatcttctgttggttttaggtgaccaaaccaatgaaagttttcataatgcagatgtgtgatctgtgaaAGagataattttccttccaagaaagagacataaagagttgtcatttgtcaaaccatcaacatttgttctcccataaacttataagggtgttttcttaatttat
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| CDS seq | atggcggcgcaggcgtctcctccaacgaagaaggtgttggtgccgatcgtcgccggcacggagccggtggaggcggcggtgcccatcgacgtcctccgccgcgccggcgcggacgtcaccgtggcttccgccgatgatggcgagctggtcgtcgaggtcatgtacggcgtcaggatcgtcgcggacgcgctcgtcgccggcggcgactgcgccgccgctcacttcgacctcatcgtcctcccgggaggggttccaggcgcggcgaacctcggcggatgcgcagcgctggaagccatggtgaggaggcacgcggcgaccggaggtctctacgccgccatctgcgccgcgccgccgctggcgctggcgtcctggggcatgctcaacggcctcaaggcaactgctcatccgctgttcgtggacaagttcccaccggaggtggccgccgtggatgcgagcgtggtggtggacgcgagcgccgtcacgagccgtggcccggcgacgtcgacggagttcgctctcgctctggtagagcaactctacagcaagaacaaggccgagcagatcgcaaaaaaaatgcttgtcagatacgatgctgggtataccatcgatgaagtcaactcggttcaatggaaatgtaacggcacgcccaaggtccttgttccagtagccaatggcaccgaggagatggagctgataacaatcatcgacgtcctgcgcagagccgacgcggacgtcgtcgttgcgtcggcggaaaacgccggcgtcgagatcgtcgcgcgccacgggatgaggatcgtggctgacacgacgctggacgaggcggctgccgatgatcagacgagcagcttcgacctgatcatcctaccgggtggcacgcctggcgcgaagacgatgagcagcaacgagaagcttgtcgctctactgaagaagcaggcggcggcgagcaagccctacggcgccattggcgccgcgacggctcatgtgctcgagccccacggtctgctccagggcaagaaagcggcggatcaggatggcggcgacgagtgcgagagcagagtggtggttgatgggaacgtgatcacgagcggaggcaccggcaccgccatggagttcgccgtggccgccgtcgagaagctgctcggccgcgacgtggcgcagagggttgcggaaggcttgctttttgcctga
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| Protein seq | MAAQASPPTKKVLVPIVAGTEPVEAAVPIDVLRRAGADVTVASADDGELVVEVMYGVRIVADALVAGGDCAAAHFDLIVLPGGVPGAANLGGCAALEAMVRRHAATGGLYAAICAAPPLALASWGMLNGLKATAHPLFVDKFPPEVAAVDASVVVDASAVTSRGPATSTEFALALVEQLYSKNKAEQIAKKMLVRYDAGYTIDEVNSVQWKCNGTPKVLVPVANGTEEMELITIIDVLRRADADVVVASAENAGVEIVARHGMRIVADTTLDEAAADDQTSSFDLIILPGGTPGAKTMSSNEKLVALLKKQAAASKPYGAIGAATAHVLEPHGLLQGKKAADQDGGDECESRVVVDGNVITSGGTGTAMEFAVAAVEKLLGRDVAQRVAEGLLFA |
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| Function | Protein DJ-1 homolog B [UniProtKB/Swiss-Prot:Q9MAH3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0007930 | OsNaBo_01g0007930.01 | Chr01 | 6395483 | 6402481 | + | NAM | ||
| CDS seq | atggcggcgcaggcgtctcctccaacgaagaaggtgttggtgccgatcgtcgccggcacggagccggtggaggcggcggtgcccatcgacgtcctccgccgcgccggcgcggacgtcaccgtggcttccgccgatgatggcgagctggtcgtcgaggtcatgtacggcgtcaggatcgtcgcggacgcgctcgtcgccggcggcgactgcgccgccgctcacttcgacctcatcgtcctcccgggaggggttccaggcgcggcgaacctcggcggatgcgcagcgctggaagccatggtgaggaggcacgcggcgaccggaggtctctacgccgccatctgcgccgcgccgccgctggcgctggcgtcctggggcatgctcaacggcctcaaggcaactgctcatccgctgttcgtggacaagttcccaccggaggtggccgccgtggatgcgagcgtggtggtggacgcgagcgccgtcacgagccgtggcccggcgacgtcgacggagttcgctctcgctctggtagagcaactctacagcaagaacaaggccgagcagatcgcaaaaaaaatgcttgtcagatacgatgctgggtataccatcgatgaagtcaactcggttcaatggaaatgtaacggcacgcccaaggtccttgttccagtagccaatggcaccgaggagatggagctgataacaatcatcgacgtcctgcgcagagccgacgcggacgtcgtcgttgcgtcggcggaaaacgccggcgtcgagatcgtcgcgcgccacgggatgaggatcgtggctgacacgacgctggacgaggcggctgccgatgatcagacgagcagcttcgacctgatcatcctaccgggtggcacgcctggcgcgaagacgatgagcagcaacgagaagcttgtcgctctactgaagaagcaggcggcggcgagcaagccctacggcgccattggcgccgcgacggctcatgtgctcgagccccacggtctgctccagggcaagaaagcggcggatcaggatggcggcgacgagtgcgagagcagagtggtggttgatgggaacgtgatcacgagcggaggcaccggcaccgccatggagttcgccgtggccgccgtcgagaagctgctcggccgcgacgtggcgcagagggttgcggaaggcttgctttttgcctga
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| Protein seq | MAAQASPPTKKVLVPIVAGTEPVEAAVPIDVLRRAGADVTVASADDGELVVEVMYGVRIVADALVAGGDCAAAHFDLIVLPGGVPGAANLGGCAALEAMVRRHAATGGLYAAICAAPPLALASWGMLNGLKATAHPLFVDKFPPEVAAVDASVVVDASAVTSRGPATSTEFALALVEQLYSKNKAEQIAKKMLVRYDAGYTIDEVNSVQWKCNGTPKVLVPVANGTEEMELITIIDVLRRADADVVVASAENAGVEIVARHGMRIVADTTLDEAAADDQTSSFDLIILPGGTPGAKTMSSNEKLVALLKKQAAASKPYGAIGAATAHVLEPHGLLQGKKAADQDGGDECESRVVVDGNVITSGGTGTAMEFAVAAVEKLLGRDVAQRVAEGLLFA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0007930 | OsNaBo_01g0007930.02 | Chr01 | 6395483 | 6401836 | + | NAM | ||
| CDS seq | atggcggcgcaggcgtctcctccaacgaagaaggtgttggtgccgatcgtcgccggcacggagccggtggaggcggcggtgcccatcgacgtcctccgccgcgccggcgcggacgtcaccgtggcttccgccgatgatggcgagctggtcgtcgaggtcatgtacggcgtcaggatcgtcgcggacgcgctcgtcgccggcggcgactgcgccgccgctcacttcgacctcatcgtcctcccgggaggggttccaggcgcggcgaacctcggcggatgcgcagcgctggaagccatggtgaggaggcacgcggcgaccggaggtctctacgccgccatctgcgccgcgccgccgctggcgctggcgtcctggggcatgctcaacggcctcaaggcaactgctcatccgctgttcgtggacaagttcccaccggaggtggccgccgtggatgcgagcgtggtggtggacgcgagcgccgtcacgagccgtggcccggcgacgtcgacggagttcgctctcgctctggtagagcaactctacagcaagaacaaggccgagcagatcgcaaaaaaaatgcttgtcagatacgatgctgggtataccatcgatgaagtcaactcggttcaatggaaatgtaacggcacgcccaaggtccttgttccagtagccaatggcaccgaggagatggagctgataacaatcatcgacgtcctgcgcagagccgacgcggacgtcgtcgttgcgtcggcggaaaacgccggcgtcgagatcgtcgcgcgccacgggatgaggatcgtggctgacacgacgctggacgaggcggctgccgatgatcagacgagcagcttcgacctgatcatcctaccggcaagcagcaaacacgaactctcgctgtccaaacccattttgatctga
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| Protein seq | MAAQASPPTKKVLVPIVAGTEPVEAAVPIDVLRRAGADVTVASADDGELVVEVMYGVRIVADALVAGGDCAAAHFDLIVLPGGVPGAANLGGCAALEAMVRRHAATGGLYAAICAAPPLALASWGMLNGLKATAHPLFVDKFPPEVAAVDASVVVDASAVTSRGPATSTEFALALVEQLYSKNKAEQIAKKMLVRYDAGYTIDEVNSVQWKCNGTPKVLVPVANGTEEMELITIIDVLRRADADVVVASAENAGVEIVARHGMRIVADTTLDEAAADDQTSSFDLIILPASSKHELSLSKPILI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 2.564727 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0217500 | RBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g11860 | RBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0217500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0008440 | RBH | 0.0 | 0.0 | 0.430264 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0008080 | RBH | 0.0 | 0.0 | 0.227640 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0008460 | RBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0007980 | RBH | 0.000000 | 0.309753 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0008080 | RBH | 0.0 | 4.607196 | 0.754342 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0105800 | RBH | 9.3395395 | 2.8120805 | 4.69427 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0008050 | RBH | 0.0 | 0.990477 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0105500 | SBH | 2.4954005 | 4.2011455 | 4.261431 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0009300 | RBH | 0.082304 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0008080 | RBH | 0.000000 | 5.518096 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0008060 | RBH | 1.592895 | 4.283757 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0008110 | RBH | 0.0 | 0.000000 | 0.546113 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0007970 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G008080 | RBH | 0.000000 | 0.000000 | 0.231319 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0007950 | RBH | 0.0 | 17.145403 | 7.683311 |
