Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0005430 | OGI:01014800 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:4021508-4022872 | ||||||||
| Gene Symbol | OsCDR1 | ||||||||||
| DNA seq | atggcggccatggcgccttcctccgtgctcgtgctcctcggcgtcgtcctcctcgtcgccggcgggaggctgtgcgagtgcgcggcgagcggcggcggattcagcgtggagttcatccaccgtgactcacccaggtcgccgttccatgacccggcgttcaccgcccacggccgcgcgctcgcggcggcgcggcggtccgtggcgcgcgccgccgcgatcgcgggctccgcctcctcctccgcctccggcggcggcgcggcggacgacgtcgtgtcgaaggtcgtgtcccggtcgttcgagtacctcatgacggtcaacctcggctcgccgccgcgctcgatgctcgccatcgccgacacgggcagcgacctcgtgtgggtgaagtgcaagaaggggaacaacgacacctcatcggcggcggcgccgacgacgcagttcgacccgtcccggtcgtcgacgtacggccgcgtgagctgccaaaccgacgcctgcgaggcgctcggccgcgccacctgcgacgacgggtcgaactgcgcctacctctacgcctacggcgacgggtcgaacaccaccggcGtcctctccaccgaaaccttcaccttcgacgacggcggcgcggggaggagcccccgccaggtgcgcgtcggcggcgtcaagttcggctgctccaccgcgacggccggctcgttcccggccgacggtctggttggcctcggcggcggcgcggtctccctcgtgacgcagctcggcggcgcgacgtcgctcgggcggagattctcctactgcctcgtcccgcactccgtcaacgcctcgtcggcgctcaacttcggcgccctcgccgacgtcaccgagcccggcgcggcgagcacgccgctcgtcgccggcgacgtggacacgtactacaccgtggtcctcgactccgtcaaggtcgggaacaagacggtggcgtcggcggcgagctcccgcatcatcgtggactccggcacgacgctgacgttcctcgacccgtcgctgctggggccgatcgtcgacgagctctcccgccggatcacgctgccgccggtgcagtcgccggacgggctgctgcagctgtgctacaacgttgccgggcgggaggtggaggccggcgagagcatcccggacttgacgctggagttcggcggcggcgcggcggtggcgctgaagccggagaacgcgttcgtggcagtgcaggaggggacgctgtgcctggcaatcgtggcgacgacggagcagcagccggtgtccatcctcgggaacctcgcgcagcagaacatccacgtcggctacgacctcgacgccggcacggtcaccttcgccgtcgccgactgcgccggctcatcctag
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| CDS seq | atggcggccatggcgccttcctccgtgctcgtgctcctcggcgtcgtcctcctcgtcgccggcgggaggctgtgcgagtgcgcggcgagcggcggcggattcagcgtggagttcatccaccgtgactcacccaggtcgccgttccatgacccggcgttcaccgcccacggccgcgcgctcgcggcggcgcggcggtccgtggcgcgcgccgccgcgatcgcgggctccgcctcctcctccgcctccggcggcggcgcggcggacgacgtcgtgtcgaaggtcgtgtcccggtcgttcgagtacctcatgacggtcaacctcggctcgccgccgcgctcgatgctcgccatcgccgacacgggcagcgacctcgtgtgggtgaagtgcaagaaggggaacaacgacacctcatcggcggcggcgccgacgacgcagttcgacccgtcccggtcgtcgacgtacggccgcgtgagctgccaaaccgacgcctgcgaggcgctcggccgcgccacctgcgacgacgggtcgaactgcgcctacctctacgcctacggcgacgggtcgaacaccaccggcGtcctctccaccgaaaccttcaccttcgacgacggcggcgcggggaggagcccccgccaggtgcgcgtcggcggcgtcaagttcggctgctccaccgcgacggccggctcgttcccggccgacggtctggttggcctcggcggcggcgcggtctccctcgtgacgcagctcggcggcgcgacgtcgctcgggcggagattctcctactgcctcgtcccgcactccgtcaacgcctcgtcggcgctcaacttcggcgccctcgccgacgtcaccgagcccggcgcggcgagcacgccgctcgtcgccggcgacgtggacacgtactacaccgtggtcctcgactccgtcaaggtcgggaacaagacggtggcgtcggcggcgagctcccgcatcatcgtggactccggcacgacgctgacgttcctcgacccgtcgctgctggggccgatcgtcgacgagctctcccgccggatcacgctgccgccggtgcagtcgccggacgggctgctgcagctgtgctacaacgttgccgggcgggaggtggaggccggcgagagcatcccggacttgacgctggagttcggcggcggcgcggcggtggcgctgaagccggagaacgcgttcgtggcagtgcaggaggggacgctgtgcctggcaatcgtggcgacgacggagcagcagccggtgtccatcctcgggaacctcgcgcagcagaacatccacgtcggctacgacctcgacgccggcacggtcaccttcgccgtcgccgactgcgccggctcatcctag
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| Protein seq | MAAMAPSSVLVLLGVVLLVAGGRLCECAASGGGFSVEFIHRDSPRSPFHDPAFTAHGRALAAARRSVARAAAIAGSASSSASGGGAADDVVSKVVSRSFEYLMTVNLGSPPRSMLAIADTGSDLVWVKCKKGNNDTSSAAAPTTQFDPSRSSTYGRVSCQTDACEALGRATCDDGSNCAYLYAYGDGSNTTGVLSTETFTFDDGGAGRSPRQVRVGGVKFGCSTATAGSFPADGLVGLGGGAVSLVTQLGGATSLGRRFSYCLVPHSVNASSALNFGALADVTEPGAASTPLVAGDVDTYYTVVLDSVKVGNKTVASAASSRIIVDSGTTLTFLDPSLLGPIVDELSRRITLPPVQSPDGLLQLCYNVAGREVEAGESIPDLTLEFGGGAAVALKPENAFVAVQEGTLCLAIVATTEQQPVSILGNLAQQNIHVGYDLDAGTVTFAVADCAGSS |
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| Function | Aspartic proteinase CDR1 [UniProtKB/Swiss-Prot:Q6XBF8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0005430 | OsNaBo_01g0005430.01 | Chr01 | 4021508 | 4022872 | + | NAM | ||
| CDS seq | atggcggccatggcgccttcctccgtgctcgtgctcctcggcgtcgtcctcctcgtcgccggcgggaggctgtgcgagtgcgcggcgagcggcggcggattcagcgtggagttcatccaccgtgactcacccaggtcgccgttccatgacccggcgttcaccgcccacggccgcgcgctcgcggcggcgcggcggtccgtggcgcgcgccgccgcgatcgcgggctccgcctcctcctccgcctccggcggcggcgcggcggacgacgtcgtgtcgaaggtcgtgtcccggtcgttcgagtacctcatgacggtcaacctcggctcgccgccgcgctcgatgctcgccatcgccgacacgggcagcgacctcgtgtgggtgaagtgcaagaaggggaacaacgacacctcatcggcggcggcgccgacgacgcagttcgacccgtcccggtcgtcgacgtacggccgcgtgagctgccaaaccgacgcctgcgaggcgctcggccgcgccacctgcgacgacgggtcgaactgcgcctacctctacgcctacggcgacgggtcgaacaccaccggcGtcctctccaccgaaaccttcaccttcgacgacggcggcgcggggaggagcccccgccaggtgcgcgtcggcggcgtcaagttcggctgctccaccgcgacggccggctcgttcccggccgacggtctggttggcctcggcggcggcgcggtctccctcgtgacgcagctcggcggcgcgacgtcgctcgggcggagattctcctactgcctcgtcccgcactccgtcaacgcctcgtcggcgctcaacttcggcgccctcgccgacgtcaccgagcccggcgcggcgagcacgccgctcgtcgccggcgacgtggacacgtactacaccgtggtcctcgactccgtcaaggtcgggaacaagacggtggcgtcggcggcgagctcccgcatcatcgtggactccggcacgacgctgacgttcctcgacccgtcgctgctggggccgatcgtcgacgagctctcccgccggatcacgctgccgccggtgcagtcgccggacgggctgctgcagctgtgctacaacgttgccgggcgggaggtggaggccggcgagagcatcccggacttgacgctggagttcggcggcggcgcggcggtggcgctgaagccggagaacgcgttcgtggcagtgcaggaggggacgctgtgcctggcaatcgtggcgacgacggagcagcagccggtgtccatcctcgggaacctcgcgcagcagaacatccacgtcggctacgacctcgacgccggcacggtcaccttcgccgtcgccgactgcgccggctcatcctag
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| Protein seq | MAAMAPSSVLVLLGVVLLVAGGRLCECAASGGGFSVEFIHRDSPRSPFHDPAFTAHGRALAAARRSVARAAAIAGSASSSASGGGAADDVVSKVVSRSFEYLMTVNLGSPPRSMLAIADTGSDLVWVKCKKGNNDTSSAAAPTTQFDPSRSSTYGRVSCQTDACEALGRATCDDGSNCAYLYAYGDGSNTTGVLSTETFTFDDGGAGRSPRQVRVGGVKFGCSTATAGSFPADGLVGLGGGAVSLVTQLGGATSLGRRFSYCLVPHSVNASSALNFGALADVTEPGAASTPLVAGDVDTYYTVVLDSVKVGNKTVASAASSRIIVDSGTTLTFLDPSLLGPIVDELSRRITLPPVQSPDGLLQLCYNVAGREVEAGESIPDLTLEFGGGAAVALKPENAFVAVQEGTLCLAIVATTEQQPVSILGNLAQQNIHVGYDLDAGTVTFAVADCAGSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0140100 | SBH | 0.0 | 0.0 | 9.556934 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g08330 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0178600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0005750 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0002700 | SBH | 0.0 | 2.858600 | 0.782353 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0005720 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0005360 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0005580 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0071700 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0005530 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0071900 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0005340 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0005530 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0005590 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0005530 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0005510 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G005550 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
