Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0004470 | OGI:01012370 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:3346014-3350188 | ||||||||
| Gene Symbol | Os_F0651 | ||||||||||
| DNA seq | ggtcacggtaaaatccggaccatctcgacagtccagtagcaatacatataaaaaccttaatgcagatctataaagaaactttatccttagatttttttgagggctatactaacgcgagccaatgtaaatcaaatggaaaaagcattttcctgggtattactagcatgcaaccatcatctgtaagaacgaggtttaaaaatgttgaaacaacagagcacatcaaatcttcgtatgttgggtggtattcttctcatgtttacaaaagacaaaatgaacacatctatccagtttacgcagtccttttcctactagatggagaggatccatcttgccgcggacgcttcaacttctgtatgcattctccatcattcctcgtatgcttcaaagatgggtcgctgacatagtgaaaataatccacgtaatacagtgcattctcgtcctgatgagctagaccaacaacttcttgagtccctctccactgaatcttgcatttgtgagcaagccttgtacatgaatagccgtcacggtctaattgaccttcggatatgagattctgtctgtttttgcatagaagaaagcattaaattggattagtaaacagttgcaacccatacgttattggatgagaacattttcaacatacgattcaattgtaatgaacatacctcagtcccttacagtacaacacattaaacagtgttactgtactagtcttcacatttccaaTttttgagcttaaaaatgcacctctgggggtaacaaatgactgtacctcgtgtcttgtatcagatagaagtccctttataccagtcatgtgattgcagcatagagaatcaactacccacaaatttttctgcaagtaaagacaaattatgagaggaagttaccaggtatggatagaagggctagaagcctagaactaacctcatcaattgccgttgaggacaacatcgatctggttatagcttgttgttcttcttttctgcatatgatgcttcgaactatatattcatttctcttttcgtggagatatccctcgccgatcatttcacctttatttacatcaaagattttaatccttttatctccaacatacatgagggtgttagaatcatccagttcaccaagagatataactttaaatttgagagtagagtggtagaatactggactcaatttgatttgatcatatatcacttcaccggacatgtgcaggcacactgggtcgccactagcatcataaacagtatcctgatgttcagtaggaacctcatggagatttttgaagagtttatcatcatcacacatgtggtggctagcaccagaatcaaaatagaagtggacatctttcttagtaatgcaaaaaaggtgcccttgttggattttgctttttgggtccattgcaaaaacctaattaaaatgagacggcagaggttgttcaggcgaaaagaaattgaaaggtgcatgcattgaacataagaatataaatagagataaattatcaccttgttggaatgaaagggattgttggagagcactgattttacatcatgtaaactgatcaaatctgaataatgagcacaaaaagacatttactcagggctatagagaccaatgttcagaactagtttaaaatgactcatacaattaccttgtgagtaatctgataaagtagtatgtagtgggagcggacaacgttttctcatatcatcataactctcaaaaaaaggaggttcatagtccagaggctgacaatagggggaaaagaaggttgtgttagtttccagtaacaaagttgtatggaacaattttctgtcagtgcatagagatagtacatcagtgtagcagctcagaatttcaggatggatcaATatatataactataactagaatagagaggatgcaggtactagcatatgggtagagtacttttcagtggaagctactagtgtatgaactaaattattcagcagtgatagatataaaatatttttcaggttaatattactactggagaaaacacccatggttcactcaattcagttgaacaaaaaggcataatacatttcactttgaaatagccacataggtcactggaaatacagaagggtctccttattcatgacaattttctcgcacgcgccttttggtcatactaatctagaagaattttttgaggtgaaatagtaatctagaagaatatccttaaccaattatgtaaacaatactcccacatgcatttttaatatgtaaacaaggctttactttgctgatcaaccagttagttggttttgattgcatattgaaataccagtcgaagctgggctaggttgtattataatcctgagtatggaatgaaagatcaagaaagttcagttctactgcaaaaaggatgttcatctctagcacctcaagttatgcatgtcactttgttcacattttgccctattcaaaatctggttcatttcattcacatgttgccccattcaggacctgtttcactgctgtacatgtcgtgttgtccgaaccatgaagttctagtagaagtataagaggctcaccaaatttgattaacaaagctctcagctgcatcggacctcattgtccatatactttgagtggatcccgtcagccgtaagtcgattgtaatttcgctgaagtatgtgaatgatactgcaaaagaaatgtaaatgtgtgatagtattagccatgtcagcttgatatgctattagtaagccaaagccccactctagcagaaacttacggcaatactcctccaacagagggcccttctcatcatagatagagaagatgatagttttgaggaacttctttttcagagcatcataaacacctaagtttgataccaaaagttaatcaaatggacagataagaaattgttttttcacgcataaccatatgctggacaagcaaagtatttaaggagctcatgctatgtcgggtacttttcacctttttctagccaatcaacaagcctttgggactcgtcatccatcggcgtaagcttttttatctgcatccctgtcataagaaacaaacttatcagttcattgctacaagtgtgacaaaagaataggtatagattcaaataagatttcaacctgtcggtagaaaaggcatatcagagaagaactccttagaaaacaatcctctcacgtagcatatattgtagaagactattttaataagactcatcaagctgtcagttagcgcatcatcattctcctaaaataagtttagcaacaataaattagtttagcaaacacaattgttgcatggacaaatctaaattattaaataggttggaaccgtgagaaaacaacctcgagcaggctaagaaatgcaggtggccaagacagaaaatatgcaaatacatcaaccggcacagcagctggagaagaagttatgaactgaaactccaaagatgaaggttccagtgcgagcacttggttggagttggaggcgatccagcagatctgtccctgatcgtgggcggcacagcacatgctgagatcaaaaCgaagaaccctaacatgcttggagcgtggaaggatgcaccagaggcaatcctcgccgttgacgaaggcgacccaggcgcgagggcggtcgtcgtcgatggtgacgcagaccgcctggaagtgcagcctactgggatgcgcgcgcgagagcaccgcggcgccgatgatgcgccgggtttggcgccactggtcgtcgggcagagcgtcgcgcggcggaggagggagcagagcccggcgtccggatgccggatcgagcaccagtatgcggagcaggagaatgtcgggaagctcgcagggtagtagaaggaccaggccgtggtggacatcgtgcacggacacaccggagaggtcgtcgggagccaaggggagggagaggcgcgggaacgaggcgtcgctggggacgaagacgggggggatctgggccgaccggattttctccgggtgcaggaggtagccgacgagcggcggtgtgcgggggacggcgagggccgccgcgcgccgccagctcttgttggcaagggccgcgcggaccacatccctcggacacagacacttcaggatggatcggagcaggaaatcatccgtcagcacggccgccatcgccgccgccgccggtggctcttcgtcgccttccat
More
|
||||||||||
| CDS seq | atggaaggcgacgaagagccaccggcggcggcggcgatggcggccgtgctgacggatgatttcctgctccgatccatcctgaagtgtctgtgtccgagggatgtggtccgcgcggcccttgccaacaagagctggcggcgcgcggcggccctcgccgtcccccgcacaccgccgctcgtcggctacctcctgcacccggagaaaatccggtcggcccagatcccccccgtcttcgtccccagcgacgcctcgttcccgcgcctctccctccccttggctcccgacgacctctccgggatgcagataaaaaagcttacgccgatggatgacgagtcccaaaggcttgttgattggctagaaaaaggtgtttatgatgctctgaaaaagaagttcctcaaaactatcatcttctctatctatgatgagaagggccctctgttggaggagtattgcctatcattcacatacttcagcgaaattacaatcgacttacggctgacgggatccactcaaagtatatggacaatgaggtccgatgcagctgagagctttaaagatgtccacttctattttgattctggtgctagccaccacatgtgtgatgatgataaactcttcaaaaatctccatgaggttcctactgaacatcaggatactgtttatgatgctagtggcgacccagtgtgcctgcacatgtccggtgaagtgatatatgatcaaatcaaattgagtccagtattctaccactctactctcaaatttaaagttatatctcttggtgaactggatgattctaacaccctcatgtatgttggagataaaaggattaaaatctttgatgtaaataaaggtgaaatgatcggcgagggatatctccacgaaaagagaaatgaatatatagttcgaagcatcatatgcagaaaagaagaacaacaagctataaccagatcgatgttgtcctcaacggcaattgatgagaaaaatttgtgggtagttgattctctatgctgcaatcacatgactggtataaagggacttctatctgatacaagacacgaggtacagtcatttgttacccccagaggtgcatttttaagctcaaaaAttggaaatgtgaagactagtacagtaacactgtttaatgtgttgtactgtaagggactgagacagaatctcatatccgaaggtcaattagaccgtgacggctattcatgtacaaggcttgctcacaaatgcaagattcagtggagagggactcaagaagttgttggtctagctcatcaggacgagaatgcactgtattacgtggattattttcactatgtcagcgacccatctttgaagcatacgaggaatgatggagaatgcatacagaagttgaagcgtccgcggcaagatggatcctctccatctagtaggaaaaggactgcgtaa
More
|
||||||||||
| Protein seq | MEGDEEPPAAAAMAAVLTDDFLLRSILKCLCPRDVVRAALANKSWRRAAALAVPRTPPLVGYLLHPEKIRSAQIPPVFVPSDASFPRLSLPLAPDDLSGMQIKKLTPMDDESQRLVDWLEKGVYDALKKKFLKTIIFSIYDEKGPLLEEYCLSFTYFSEITIDLRLTGSTQSIWTMRSDAAESFKDVHFYFDSGASHHMCDDDKLFKNLHEVPTEHQDTVYDASGDPVCLHMSGEVIYDQIKLSPVFYHSTLKFKVISLGELDDSNTLMYVGDKRIKIFDVNKGEMIGEGYLHEKRNEYIVRSIICRKEEQQAITRSMLSSTAIDEKNLWVVDSLCCNHMTGIKGLLSDTRHEVQSFVTPRGAFLSSKIGNVKTSTVTLFNVLYCKGLRQNLISEGQLDRDGYSCTRLAHKCKIQWRGTQEVVGLAHQDENALYYVDYFHYVSDPSLKHTRNDGECIQKLKRPRQDGSSPSSRKRTA |
||||||||||
| Function | Meiosis-specific protein PAIR2 [UniProtKB/Swiss-Prot:Q76CY8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0004470 | OsNaBo_01g0004470.01 | Chr01 | 3346014 | 3350188 | - | NAM | ||
| CDS seq | atggaaggcgacgaagagccaccggcggcggcggcgatggcggccgtgctgacggatgatttcctgctccgatccatcctgaagtgtctgtgtccgagggatgtggtccgcgcggcccttgccaacaagagctggcggcgcgcggcggccctcgccgtcccccgcacaccgccgctcgtcggctacctcctgcacccggagaaaatccggtcggcccagatcccccccgtcttcgtccccagcgacgcctcgttcccgcgcctctccctccccttggctcccgacgacctctccgggatgcagataaaaaagcttacgccgatggatgacgagtcccaaaggcttgttgattggctagaaaaaggtgtttatgatgctctgaaaaagaagttcctcaaaactatcatcttctctatctatgatgagaagggccctctgttggaggagtattgcctatcattcacatacttcagcgaaattacaatcgacttacggctgacgggatccactcaaagtatatggacaatgaggtccgatgcagctgagagctttaaagatgtccacttctattttgattctggtgctagccaccacatgtgtgatgatgataaactcttcaaaaatctccatgaggttcctactgaacatcaggatactgtttatgatgctagtggcgacccagtgtgcctgcacatgtccggtgaagtgatatatgatcaaatcaaattgagtccagtattctaccactctactctcaaatttaaagttatatctcttggtgaactggatgattctaacaccctcatgtatgttggagataaaaggattaaaatctttgatgtaaataaaggtgaaatgatcggcgagggatatctccacgaaaagagaaatgaatatatagttcgaagcatcatatgcagaaaagaagaacaacaagctataaccagatcgatgttgtcctcaacggcaattgatgagaaaaatttgtgggtagttgattctctatgctgcaatcacatgactggtataaagggacttctatctgatacaagacacgaggtacagtcatttgttacccccagaggtgcatttttaagctcaaaaAttggaaatgtgaagactagtacagtaacactgtttaatgtgttgtactgtaagggactgagacagaatctcatatccgaaggtcaattagaccgtgacggctattcatgtacaaggcttgctcacaaatgcaagattcagtggagagggactcaagaagttgttggtctagctcatcaggacgagaatgcactgtattacgtggattattttcactatgtcagcgacccatctttgaagcatacgaggaatgatggagaatgcatacagaagttgaagcgtccgcggcaagatggatcctctccatctagtaggaaaaggactgcgtaa
More
|
|||||||
| Protein seq | MEGDEEPPAAAAMAAVLTDDFLLRSILKCLCPRDVVRAALANKSWRRAAALAVPRTPPLVGYLLHPEKIRSAQIPPVFVPSDASFPRLSLPLAPDDLSGMQIKKLTPMDDESQRLVDWLEKGVYDALKKKFLKTIIFSIYDEKGPLLEEYCLSFTYFSEITIDLRLTGSTQSIWTMRSDAAESFKDVHFYFDSGASHHMCDDDKLFKNLHEVPTEHQDTVYDASGDPVCLHMSGEVIYDQIKLSPVFYHSTLKFKVISLGELDDSNTLMYVGDKRIKIFDVNKGEMIGEGYLHEKRNEYIVRSIICRKEEQQAITRSMLSSTAIDEKNLWVVDSLCCNHMTGIKGLLSDTRHEVQSFVTPRGAFLSSKIGNVKTSTVTLFNVLYCKGLRQNLISEGQLDRDGYSCTRLAHKCKIQWRGTQEVVGLAHQDENALYYVDYFHYVSDPSLKHTRNDGECIQKLKRPRQDGSSPSSRKRTA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.976350 | 0.000000 | 2.896348 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0165800 | RBH | 0.954956 | 0.957063 | 1.405734 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g07170 | RBH | 0.635907 | 0.563754 | 0.271417 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0165800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0004750 | RBH | 0.274916 | 3.046003 | 4.393470 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0004460 | RBH | 0.000000 | 0.573608 | 2.310898 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0004720 | RBH | 0.913427 | 4.070827 | 4.342657 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0004370 | RBH | 0.026616 | 0.034008 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0004600 | RBH | 4.112820 | 5.326801 | 7.270102 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0060100 | RBH | 2.831429 | 8.7925945 | 7.055922 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0004520 | RBH | 0.070303 | 0.256160 | 0.778484 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0061000 | RBH | 2.1879495 | 7.11574 | 15.6012725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0004370 | RBH | 0.047510 | 0.071465 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0004530 | RBH | 0.258973 | 3.490839 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0004590 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0004560 | RBH | 0.669355 | 0.535968 | 0.199530 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0004490 | RBH | 0.172277 | 5.518416 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G004580 | RBH | 0.272984 | 2.940498 | 1.398582 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
