Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0003060 | OGI:01007830 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:2402507-2410000 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcggcagaagcaggagcactgatgggtgctgatcgccgggaaccggaggccggcggtggcgccgccgcgttgggtgcggtcggcatagccaccgtctccgtagccaccactctggccgcagtgttccagccgccgccgggtggcctcctcgccgacaccttctaccgcctcgcgctctccgggaccttccttggcgggatgaccctggtcggcgcttcggtctgggtggccgacaacccggctgcccgccgtgccgccggcaagaagctgttatacaccgccatcccgccgctcctcgccgccatgggcttatctgtggcggcgctgctctggtaagtatggttctcgaacaggctccggtccggccgcaccactgtctgttagcaataagtctagctgctcagagtagttagtttccctctgtttttacgttgagtcttgcacatgatctgttcatctgtttgtttgtgtgcatagtgggcttgacgcacgctgcgttcgtgcggagtccgtggtgtcgtgcgtggtgtgctccagttcgtgggatggcgcgaagtggcaaggagtgtggcacgcacaattaggaggccactatggccacgtttaactttcttgtaatttgctatttaaggttaagctctaatccagaaaagctgccagttaatgcagcaccaaaatactctgtgttgctctgtttctgttttgccagacaagctacagtttttcgatttgccgctaacactgtccgcctatccatgatcagagcaaacaataataattgccggcgtctctctggcttgcaggtcgatgtgaagatggatatccttcttccatctggtttgcttgtttccttcgtttgctgcgtcgtggttgtgttttatcgtcgtagtgcatcttctgttgttgccaatagttaagagtccaatgttctgttcttattactctgtctcgtgtgcttcgattgatgaccggcttaatcgaccagtgttctatggagtgttcatcatatctctcgatttcaatttcaagtatatatggtgcttcattttttttaatgagatgatAaagttatggtgattgtactcctaattttcatcttacttgcattctgcgaatattggatttggaatactccatggatccatgcgtatcggcaccgccgccggcgagcatggcgccgtttctcctcaccaattaattcatcatcaattcaatcgcgccaccgctgccgcccgctggtagtaccactgtttcggtggcggtaggggactcgttcgttgccatggaggcggcgtcgtcgccggcgtggcgtctctctgcgccgctcgccgtcgacgccgacgccgaattgttctatttggaagcttctggcgcttctccttctagaagccatcctttcctctcttttttttcggtttttttgggtgatacaagtggggaagggtgggccatacaggtggggcccacatgccccttgaccttgttgtgttgcgggcggcggctacggccatggagatctcgcgactcgcggtcgcggccatgtgccggtgaggtcggctgcttcgccggcgtctccgcctccgcatctacgcctgattgatCcccccccccccaacctatctccactgtgctatcgcgtttcctgcggacttgcggaggttgtggttgaggcagtagcccgtggggcggtgatgcggcgccgagattccgctcgtccacggatttccggtcgccatcgccgggattcgtcttctccggccaacccctcgccgcgccgcccgtcctcggccaggatctggtcgggatcgcttgtggtaggtgttgggcacttggggtttgaaagacagcatcgttgatgtgctttgagttcctgcctaattgagttatgctgactctgtcgatatccacatcttcagatactattcccatgatccctaaaatcccagcagttgcgttgcgtggtaggttatgtaaagcgcattcctgtgatgaaaaATataccctgggagacagaaagtcagttgtatcaagcgatccaacacactaggtccctaaatattatcgtagataccattttctcttcagtattctgtttaaagactgatattggtctttggatgatgtgcttgttcatcgcaccagttgatctttactattggtgcatatttagttccaagacgtcgttttagttaagctgctgaagcgttgagcatcttgtcatgttgatcttcttatgagtggttcaggatggtttgttctgttttaatggaagtgcaagaaggggctgtcccctgctaatgggaagagaaaaggatagtatgtattttagcaacctacaattcaattagttcactaagctattatttatggctgttatatcctgttctgagtatttatttgttatactgtaatggtattaaatttctggcattgttatgcatgattatattcgatcatatacagctattagtaattcatgtagttagagctgaatgggagttttgctagaaagacattgcttctttcaacgacccttatgcaaacaaaattaaagtgccagtttctctgttgtgctgattcccattgttacataactgaaacttaagtaattgcaaaatttgatggaactcatatattcttctactcttataataagggaggtttgtatgtagctacactcatgctatatgcatgcgctctgtctatctgacttttgtatttatatttgtatacaagacattgaggtcaactaaaattctatgccaaatggcacagccatatttcatacatgaatatggctatctctttgcctggtaggttatgaaatgtgaactctatgtgtttattttgatgtgaaatggcctcagggcaactcattttgatgtatgagtatacatgtcaatccacacagtaggtcctgagatattttattaatgaccttttcacttttcaccatccttcacttgttaaacttctgagaatatgctctggttgatagtagttagtgtccgtgctttgacttattgccgaacccttgagagcatcttgtaatgttcaactcttatgaattgttgatgatgaccttttctcttctgatgaataggatgaatagcggcatggcaacccaagggccaaggccagagcactagggcctagaggcattcctagaaacttggagcaaacgaagaaaggtagcagaaccagtgtagaggaggcattaggagaaatcttaaggacatttggttactttgaaataccataatgcgtctcatAaaaaatattctaattttaaagtttgtactatgtaataggtggttaaatgctgTtcttctgagtgatggagttgcagattgtaaatcagtctttacttatacaaacgatgggccaatcattagcttgttctcgtcttttttttttttttggtcaaaatgaattggaatagcaggtgcctttgaagtgtAaatataacagaacgagtaggtaaattttaatataattccgaaagaatcatcatcattgtgtcattttctttttcatgcaatgaacaacagatttgtatatatgtatttttaccatcagtaacagtcctttattaatgcatagtaTGTtgttctgcTtttctgtagggggacgttgagttgtaagaactaagaagaccagatgcatctgctcagattttacaggcctgtataaccagttaacgagtggcaaaagaaaatgtctcgcggccgtgtctggtacataactttgccaggagatctatctgttgatgcacacaggctgccatggcattgttacccagttgctcttacatgcatttctgctggcataagatggtggaggttctgttgttgaacctggaacacaaccggtgctcagaagaatttcgtatcactacaacctatcaggatttgatcgagcaatttggtatgttcatacacatttgagcaattgtacagtactccgaagttggtgttttctatcatctggtaattgtggatcactggcatatcgaggaattgtggatcactgacatatggaggaattgtatatcactggcatattgaggaatcaacctgacgtataatattcagggtgtctttttgtatacgtggagactgttgtgtatgccatttttctggaaggtcatgtagtatcaacatatccgtatcgccgtaccagtatcacatatccgtgcatcacaaataaccatattaTtttctatatcgatatttatgattaaattgagttaagaatttcttttgttgtgcggataactgcactgattgcaaatctgccaatgagtaccaaaatattcgtgatttagtgcattgtgttgctgtgactgaatctgaaagtttggcagctagaatgaataccaagtattgttgtgcatatccccgtggaataagtctattttacctccatcattgaatggtttcctttaaccacaaaaccgggtattacgtcatcttcacaaaccagtgcaaattaccttcttcagtggtttgacaatcggtttttgttgacgtggtgcttgattgtagttgactcgccgagttggcaggtgggacccacatgtcagcgacttccacctcatatcatgcttttctccccttctctttcctttctttaatctcccTtctctcttaccttccagcagcaacaaaggccatgagggctacggtggtagtgagccggatttgagggtggcggcaacgacgaagaagggaaaggaggatgcggagacgaaatagcaatagcagcaggaagcgactgcagcagcGAgagagaggaggttgtggcggcggcggtgaagcggaagcagcaggtggctgctatggcggtgagggagaggaggctgcggagacgacagcgtggaagcagcaACagcagcaggcggtggcgtcgaagtagaaataataggtgattgcattggtggtgatggagatgaggttgctacgacagcgagggagaGGaagtggcggcatcgaagcaacagtagtaggcgacggcgaggaagaggaagtggcggtatcgaatcagcagtagcaggcgacggtagtgacgacattgacgcagtggaatgcgcggatactctcgatggcttcctcatctccctcctttcttcctcgccggccaccgaccgtgctaccgccttgcttggcgatcactggctgctgtcgtcggcttcgtctccggccaccaccactgcagcaacttgggaccaacctgagactagtgtaaatggagtggtatgtgtaagtgggcccgtctatcggatgggctaggctacgcggttgtagaggtagggatgttacacgaccgacggtcttcctcgttgggagaaccagattgggaaaaaaggaaagagaggatagagaaggaggaacaaatgtttcactgacaggtgggtcccacctatcatgttggtaaaacccgctttctgaactaccgaagtagtcgatttgcactggtttttaaagatgagggatatgctatccctagttttgtggttgagggagatgattcaatcaggagtaagagatgagagaggaaaagtagacttattcttatctccgtagcccggacatgatccaactactgagctcggacaaattacgcggtctgactaaggtgggttagttctcgaacgttcgcatctcgcaaacagatcaataggtttatcgttatcggttctaacgacgtgtttaagctcttactatataccccctccgtcctataatataagagattttgacttttttgcttacactatttgaccatttgtcttattaaaaaaaattAatatttgctgctagtgaacgctccaacacctctcgttccaaccatcctcacgtgatttccggcgcgcgtgcaacgctgggagctactcaagccagcccatgggtttaaatctaccttttctctccatcccaggccttagcccaacaacaccttggtcaacccaaaacatatttatacctagactatatatatacatacAaatttaaacaatgcaacagtgtgtaatctctttctAaaaaaatatttatatgtgaaaaaaatctatacatagaaactttatacaaagatattttatacatataaactttatacatagaaagtttctgcatataaattttgcacctataaaatttgcacatataaatttcaaacgtattaaaagaattgcaaaaactttattttaagatcattaaggcccattaagacccatatgccactccagAGAaaaaTaacaagccatgtgcttgttttcacgatttcacgtgtactagtgttttcgtctttttgggtaggagcatgcaggccgcagggcggatagaaaaggaaaatcaagcgggaatctaaaaacggaaatccggattccttcttcgctgacttcgctaccctcgaacgttagcgcattggaataaggcttgcagaaactttttcttaaaaacatcacattaaatatttggacacatgcatagagtattaaatatagataaatttaaaaactaattgcacagttaggggagaaatcacaagacgaatcttttgagcctaattagtccataattagctataagtgctacagtaacctacatgtactaatggcggattaattaggctcaaaagattcgtctcgcggtttccagtcgagttatgaaattagtttttttcattcgtgtttgaaaaccccttccgacatccagtcaaacgtccgatatgacacccaaaacttttattttcgcgaactaaaacaggtctaagtcaatttgctgtccctcgaatttacgttgagtctgatagattaccagatttgccctttgtactgcttagacctccccagaaaacgtgtcacccccgtgaccccgtccagtcccgcaggggcaaaaccgtccttcagaCTctcTCCTCCTGATTCGGCGCCGCCCATCAGTCCGTCCGCCCCAGAGGCCCCCACCCCCCAGGTCTCCCCCTCCATTCGCATCCATAAAACCAGCCCGAGCCGCGCGTGATCCCGACGTTTCTGTAGCTTGATCTTTCTAGCATCTCTGCGCtactgctagtaattggcaagctccagcctccaaccttctcaattccctagctttgattctgaataataggaagacccacacatcggagatgatggttgacaatattgctcgccgggaagcggaggccgacggcggtgcttccaagatcgcggcggcgctggggctgttcggcgtcgccacggcctctctgatcatcaacctggtcgccgcgttcgacccaccgcagggcttcgctgaaagcgcctgctaccacctcgctcttgtggggtccttccccgccggaatgggccaggttggcgcggccatctgggtcgccgacgacccacgcggccaccgtgccgccgtcggcaagaagatcatgatcgcctccatcgcgccgctcgtcgtcgccatcggcctcaccggagaggcactgctctggtaa
More
|
||||||||||
| CDS seq | atggcggcagaagcaggagcactgatgggtgctgatcgccgggaaccggaggccggcggtggcgccgccgcgttgggtgcggtcggcatagccaccgtctccgtagccaccactctggccgcagtgttccagccgccgccgggtggcctcctcgccgacaccttctaccgcctcgcgctctccgggaccttccttggcgggatgaccctggtcggcgcttcggtctgggtggccgacaacccggctgcccgccgtgccgccggcaagaagcttagcccgtggggcggtgatgcggcgccgagattccgctcgtccacggatttccggtcgccatcgccgggattcgtcttctccggccaacccctcgccgcgccgcccgtcctcggccaggatctggtcgggatcgcttgtgatggtggaggttctgttgttgaacctggaacacaaccggtgctcagaagaatttcgtatcactacaacctatcaggatttgatcgagcaatttggaagacccacacatcggagatgatggttgacaatattgctcgccgggaagcggaggccgacggcggtgcttccaagatcgcggcggcgctggggctgttcggcgtcgccacggcctctctgatcatcaacctggtcgccgcgttcgacccaccgcagggcttcgctgaaagcgcctgctaccacctcgctcttgtggggtccttccccgccggaatgggccaggttggcgcggccatctgggtcgccgacgacccacgcggccaccgtgccgccgtcggcaagaagatcatgatcgcctccatcgcgccgctcgtcgtcgccatcggcctcaccggagaggcactgctctggtaa
More
|
||||||||||
| Protein seq | MAAEAGALMGADRREPEAGGGAAALGAVGIATVSVATTLAAVFQPPPGGLLADTFYRLALSGTFLGGMTLVGASVWVADNPAARRAAGKKLSPWGGDAAPRFRSSTDFRSPSPGFVFSGQPLAAPPVLGQDLVGIACDGGGSVVEPGTQPVLRRISYHYNLSGFDRAIWKTHTSEMMVDNIARREAEADGGASKIAAALGLFGVATASLIINLVAAFDPPQGFAESACYHLALVGSFPAGMGQVGAAIWVADDPRGHRAAVGKKIMIASIAPLVVAIGLTGEALLW |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0003060 | OsNaBo_01g0003060.01 | Chr01 | 2402507 | 2410000 | + | NAM | ||
| CDS seq | atggcggcagaagcaggagcactgatgggtgctgatcgccgggaaccggaggccggcggtggcgccgccgcgttgggtgcggtcggcatagccaccgtctccgtagccaccactctggccgcagtgttccagccgccgccgggtggcctcctcgccgacaccttctaccgcctcgcgctctccgggaccttccttggcgggatgaccctggtcggcgcttcggtctgggtggccgacaacccggctgcccgccgtgccgccggcaagaagcttagcccgtggggcggtgatgcggcgccgagattccgctcgtccacggatttccggtcgccatcgccgggattcgtcttctccggccaacccctcgccgcgccgcccgtcctcggccaggatctggtcgggatcgcttgtgatggtggaggttctgttgttgaacctggaacacaaccggtgctcagaagaatttcgtatcactacaacctatcaggatttgatcgagcaatttggaagacccacacatcggagatgatggttgacaatattgctcgccgggaagcggaggccgacggcggtgcttccaagatcgcggcggcgctggggctgttcggcgtcgccacggcctctctgatcatcaacctggtcgccgcgttcgacccaccgcagggcttcgctgaaagcgcctgctaccacctcgctcttgtggggtccttccccgccggaatgggccaggttggcgcggccatctgggtcgccgacgacccacgcggccaccgtgccgccgtcggcaagaagatcatgatcgcctccatcgcgccgctcgtcgtcgccatcggcctcaccggagaggcactgctctggtaa
More
|
|||||||
| Protein seq | MAAEAGALMGADRREPEAGGGAAALGAVGIATVSVATTLAAVFQPPPGGLLADTFYRLALSGTFLGGMTLVGASVWVADNPAARRAAGKKLSPWGGDAAPRFRSSTDFRSPSPGFVFSGQPLAAPPVLGQDLVGIACDGGGSVVEPGTQPVLRRISYHYNLSGFDRAIWKTHTSEMMVDNIARREAEADGGASKIAAALGLFGVATASLIINLVAAFDPPQGFAESACYHLALVGSFPAGMGQVGAAIWVADDPRGHRAAVGKKIMIASIAPLVVAIGLTGEALLW
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0003060 | OsNaBo_01g0003060.02 | Chr01 | 2403969 | 2406760 | + | IsoSeq | ||
| CDS seq | atggcattgttacccagttgctcttacatgcatttctgctggcataagatggtggaggttctgttgttgaacctggaacacaaccggtgctcagaagaatttcgtatcactacaacctatcaggatttgatcgagcaatttggtatgttcatacac |
|||||||
| Protein seq | MALLPSCSYMHFCWHKMVEVLLLNLEHNRCSEEFRITTTYQDLIEQFGMFIH |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.415731 | 11.104081 | 6.322420 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0145000 | RBH | 0.0 | 0.0 | 1.070271 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g05170 | RBH | 0.0 | 0.0 | 0.227486 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0145000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003110 | RBH | 0.418141 | 13.145337 | 2.328791 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0003040 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003240 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0002980 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0003090 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0041200 | RBH | 0.04096 | 0.0537215 | 0.8857865 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0003020 | SBH | 0.0 | 0.0 | 0.182428 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0042700 | RBH | 0.9461365 | 0.0181075 | 1.1876185 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0002900 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0003060 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0003120 | RBH | 3.479664 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0003160 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0003030 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003210 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0003080 | RBH | 0.0 | 0.0 | 0.0 |
