Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0002880 | OGI:01007340 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:2271378-2273977 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gagcaaattgatagaactgtggataagtatgtgtgaagtacagcatgatctgaaacccctcaatcagatggcaaccggtgtttctcagtgcatcactgaccagaagaacatagtgaatagagttctcctcatccacctcacaaaagctggatccatgattgaatacaaagtccacttcatgcatgatcagtgttcagcactagcagcaatcactgtctgaaaataccaccggcatcaagttcttgacgttcgtttcgttacattctcagtattgccaacaattatggatcacaggttatcagtcaccaacatggcacaaagatccctccacaCcccctctgttatgttccgaaaaattccccataattaattacttcaatacaggtagtgatgaagctacaagcagggcaatattacactagacatctgatccatggtgctgcctggattggtttcatctaaaacaatatgcttcggctcgcggccaactgatcatgtagaggaccaccacactgcaatccttgatcttgcaatcccatcccgtaacccgccatcccaagtgtccggcttggcgaattgaaggacgcattcgcggcattctgtggcttgacatcggccgtcgatgagaagggggcaaccgctgcggtcagagttgatgtgttggactgattgctgatcaaggaggactgtgatggcgagggaggccggtcatccgtcaggttaaccgtggtaatgtcatggatgctggAtctcctcttgtccttgccAccggattggagcctgatgaaatacttctgcgcatggctggcaacctgcgtcggcgtcctcgtctgcacgaaattgcgggatatgttcctccaatcccctttcccatgtttcttcagtcctaagaggaacaacctggcaaagaacaaagcatgatcatgatcagtaactgttcaccaattcttgcttatcctgatcggattataccaaaggcctaaacattcacacatcaagctacatgacagttttttggatcataatgaagaaagaaaatggattaacccaagttgcaagacttccatagcaatcaaaatgatgtaaaccaaccccccccccccccccaaaaaaaaaaaaatcaagtgatggTGAAtgaatccaaagaaacaaaagaaattccccttcctctcctactcaaaatccctctccccatCcccccaattgttcatggtttgaataattccaagttataaaactcccatagccatcaggtgatgtaaacgaccaaaaaacagtgatggttagtgaattcagcaaaagaaaactaaaattcaatctccccaactaaatcctgttgctgctgcatcatgacacagagagcgatgagatagtaataatcaatcactctcaaAGAGgagaagaagaagatgatgaagaacaagaagtgaatgttactactactcacttgtgctcctcctccgtccatggcacgcctttcttcctctcCTgctccggcgtacggccgaagtgccgcttcccgccgccgccgccgccgaaccggtacgcgttcctgaagtccccgacgccatgggcgccatcccactgcagtgtgaacgcgccgccggcggcggcggcgccgtagaccgggaagggcaccatgccattctcgatctgctggacgtcgagctcgaggtccctgaagtggttcatgacctcgagcgccgacctgcccgggatggcgcgcgccacccggtcccagtccgggcaccgcaggtccagcccggcgagcgcccgctcgaactgcttgttctcctccggcgaccacttgcgcgccatgaaccagttccccctcgacgcgtagtggtccatcggaggcagcacctccatgcacacatccctcatcatcatctccaatctcctcctcctcctcctcctcctcctccttgccgcagctcagctcactggaaagtagaagtaaataagaaggtgagattttctttttttttccttttttttttgtttgggtatcagaacaagatcggattctaaataacattgtgaatttgcaaaagcttgcaaaagccacgggaatttatcaacaggaacttgcgttgatgcaaaatcagacgagatacacatggaattggaggagagatttgggggggagAaaaggttggaatctttactacgagcaaatcaactgaaactctgagataattgtaacacctacccttatgattagatgagatgagagtaccaacaaactgaataagaggcaccttaccgaacagattagattgattgcaagaacagattggattaattaataaaaaaacccaaaattcacaaatctcttagcaaattgaccaaacctcatccaagacaaacacggcaacgtttggaaccacactaaattgcattaccaagaaccaaatcaactccaaaAAGaatcaaaatttaaccaaacaccaaaaaatcactcaccttcaggtcgatctctgcctcggaacgaggacaagaggcgatcgatctccctcggttcttgctcgaattctgcgaggatttcttctctcccctcacctctctctctcttagcctctctctggcttatttagcta
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| CDS seq | atgatgatgagggatgtgtgcatggaggtgctgcctccgatggaccactacgcgtcgagggggaactggttcatggcgcgcaagtggtcgccggaggagaacaagcagttcgagcgggcgctcgccgggctggacctgcggtgcccggactgggaccgggtggcgcgcgccatcccgggcaggtcggcgctcgaggtcatgaaccacttcagggacctcgagctcgacgtccagcagatcgagaatggcatggtgcccttcccggtctacggcgccgccgccgccggcggcgcgttcacactgcagttgttcctcttaggactgaagaaacatgggaaaggggattggaggaacatatcccgcaatttcgtgcagacgaggacgccgacgcaggttgccagccatgcgcagaagtatttcatcaggctccaatccggTggcaaggacaagaggagaTccagcatccatgacattaccacggttaacctgacggatgaccggcctccctcgccatcacagtcctccttgatcagcaatcagtccaacacatcaactctgaccgcagcggttgcccccttctcatcgacggccgatgtcaagccacagaatgccgcgaatgcgtccttcaattcgccaagccggacacttgggatggcgggttacgggatgggattgcaagatcaaggattgcagtgtggtggtcctctacatgatcagttggccgcgagccgaagcatattgttttag
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| Protein seq | MMMRDVCMEVLPPMDHYASRGNWFMARKWSPEENKQFERALAGLDLRCPDWDRVARAIPGRSALEVMNHFRDLELDVQQIENGMVPFPVYGAAAAGGAFTLQLFLLGLKKHGKGDWRNISRNFVQTRTPTQVASHAQKYFIRLQSGGKDKRRSSIHDITTVNLTDDRPPSPSQSSLISNQSNTSTLTAAVAPFSSTADVKPQNAANASFNSPSRTLGMAGYGMGLQDQGLQCGGPLHDQLAASRSILF |
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| Function | Transcription factor DIVARICATA [UniProtKB/Swiss-Prot:Q8S9H7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0002880 | OsNaBo_01g0002880.01 | Chr01 | 2271836 | 2273267 | - | NAM | ||
| CDS seq | atgatgatgagggatgtgtgcatggaggtgctgcctccgatggaccactacgcgtcgagggggaactggttcatggcgcgcaagtggtcgccggaggagaacaagcagttcgagcgggcgctcgccgggctggacctgcggtgcccggactgggaccgggtggcgcgcgccatcccgggcaggtcggcgctcgaggtcatgaaccacttcagggacctcgagctcgacgtccagcagatcgagaatggcatggtgcccttcccggtctacggcgccgccgccgccggcggcgcgttcacactgcagttgttcctcttaggactgaagaaacatgggaaaggggattggaggaacatatcccgcaatttcgtgcagacgaggacgccgacgcaggttgccagccatgcgcagaagtatttcatcaggctccaatccggTggcaaggacaagaggagaTccagcatccatgacattaccacggttaacctgacggatgaccggcctccctcgccatcacagtcctccttgatcagcaatcagtccaacacatcaactctgaccgcagcggttgcccccttctcatcgacggccgatgtcaagccacagaatgccgcgaatgcgtccttcaattcgccaagccggacacttgggatggcgggttacgggatgggattgcaagatcaaggattgcagtgtggtggtcctctacatgatcagttggccgcgagccgaagcatattgttttag
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| Protein seq | MMMRDVCMEVLPPMDHYASRGNWFMARKWSPEENKQFERALAGLDLRCPDWDRVARAIPGRSALEVMNHFRDLELDVQQIENGMVPFPVYGAAAAGGAFTLQLFLLGLKKHGKGDWRNISRNFVQTRTPTQVASHAQKYFIRLQSGGKDKRRSSIHDITTVNLTDDRPPSPSQSSLISNQSNTSTLTAAVAPFSSTADVKPQNAANASFNSPSRTLGMAGYGMGLQDQGLQCGGPLHDQLAASRSILF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0002880 | OsNaBo_01g0002880.02 | Chr01 | 2271378 | 2273977 | - | IsoSeq | ||
| CDS seq | atggcatggtgcccttcccggtctacggcgccgccgccgccggcggcgcgttcacactgcagtgggatggcgcccatggcgtcggggacttcaggaacgcgtaccggttcggcggcggcggcggcgggaagcggcacttcggccgtacgccggagcAGgagaggaagaaaggcgtgccatggacggaggaggagcacaagttgttcc
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| Protein seq | MAWCPSRSTAPPPPAARSHCSGMAPMASGTSGTRTGSAAAAAGSGTSAVRRSRRGRKACHGRRRSTSCS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr01 | 2272277 | 2272963 | - | OsNaBo_01g0002880.02 | OsNaBo_01g0002880.02,OsNaBo_01g0002880.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.801480 | 3.094401 | 4.363538 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0142500 | RBH | 0.928289 | 0.000000 | 13.080040 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g04930 | RBH | 0.459485 | 0.127585 | 2.486294 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0142500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0002940 | RBH | 0.451221 | 41.353359 | 9.760271 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0002860 | RBH | 0.247511 | 9.172857 | 7.534074 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0002980 | RBH | 0.921724 | 21.105673 | 14.883423 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0002800 | RBH | 0.103935 | 0.786403 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0002920 | RBH | 4.683491 | 29.621437 | 22.929901 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0039100 | RBH | 4.0634865 | 7.1787165 | 9.3108245 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0002840 | RBH | 0.104600 | 2.496420 | 2.584680 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0039800 | RBH | 6.6829545 | 5.979213 | 11.792371 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0002740 | RBH | 0.467824 | 0.887793 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002910 | RBH | 0.133703 | 9.800207 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0002940 | RBH | 11.791681 | 62.946709 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0002990 | RBH | 0.764794 | 3.828542 | 5.146451 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0002850 | RBH | 0.632215 | 16.975969 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003040 | RBH | 0.615484 | 3.549535 | 5.597318 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
