Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0000970 | OGI:01002250 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:662138-664330 | ||||||||
| Gene Symbol | RLCK3, OsRLCK3 | ||||||||||
| DNA seq | attgttatcagtttatcacacttgttgggtcatgaatttctgaagctgaccatggccatttctggtgcactctttctccctggtatctttcaaaccttgagtatactagctgttcttggggttcttgtaactaagagtggagctgcagattttcaagaacaaccagcttgcgttcctttctcctgtggacatcttgaagatatcaggtaccctttccgtttacaaggtgatccacttggctgtggtgatgaagcttatgagctagtctgtagagatggcagagctataattcacatcaacacaggaaaatattttgtgacagacatctcctataacgagtctagaTtttgggttgttgatgctaatttagacaacagcagttgccctcttccactgtggaataatcttccctacttcaatgacatgggcactaagctgtacacttctgcagttcggtgggctacatttctaaattgctcacgggcgataaacaatggcatgtacatgcctgttgcttgcttgagtgggaatacttcttttgtttatgtcttgactacatcgagctcttactatgttcaaaacatcgagccttcttgtggatacttggctgtgattcctgtggatgatcatacaaagaatgtaccagactatgcaagctatgcagatgttgtgaaattcatgaggaatggttttcctgttttgtttcctcgagttgaatccccgagtcattctccagtcatcaaagcctgtgcgagagatacattccagtgagttttagctctgcatctttctcttgcttgcttgatcaacttataaaaaatatatatttcctcTtttgtaattctgcagaaactttaaggagcaaatgtctagtaggaacattcaaaactggacttctgccattattgggactgagctacaatttttaggatgtgtaattaattattactctagtgccacgcaagtttgggttactctcgttctggtatttgccgtagagattgttaagtgcattataggtactccagatatgccttaatctaaactattataattacacccaatttatccatagattcttattcacttcatgttgcagtactatgcaggttcatcttggcgccgttgactgttttgaccttcctcggttacaaataccggaaaacaaggatatctatcgacgcagtagagaagtttctccgaatgcagcaagctcatggtccaaagaggtatgcgtacacagaaatcactgcaatcacaggccatttcagggagaagctaggccaggggggttatggttctgtgtacaaaggtttccttcctggcgatggtcatgttgctatcaagatgctgagcaactccatgtgcaatggagaagaattcatcagcgaggtttccaccattagcaggatacaccatgtgaatgtggtgcgccttgttgggttttgctcggaggaacttaggagggctcttgtatacgagtacatgccctgtggatctctagacaagtacattttctcacctgagaagaatctatcttgggacaagctcaatgagattgctctaggaatcgctagagggatcgactacttgcatcatggttgtgatatgcagatcatgcactttgacatcaagccacacaacatccttctggatagcaacttcactccaaaagtcgccgactttgggctggccaagctatacccaagggacgacagcttggtgccggtgagtgctgcacggggaacgatagggtacatcgctcctgagatgatatctcgaagctttggcaccatttcatgcaaggctgatgtttacagctttgggatgttattgctggacattgctggtggtaggaggaacagggagcagaatacatccaactcagcccatctttattacccagctttggtgtatgattgcctaactcaacaagaagtgagcgagatttcagaggatgttggtatccactgggtagaaaggaagttgtgcattgttgggttctggtgcattcagatgaaaccagctgaacggccttcgatgagcgaggttgtggagatgctcgagtctgatgatcctgataacctgcaggtacctccgagacctttctttggtgtggatgatcacatctctgagatggatgattgctgccattcttcatcaaagtcaagtgcaatctcagaggatgactga
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| CDS seq | atggccatttctggtgcactctttctccctggtatctttcaaaccttgagtatactagctgttcttggggttcttgtaactaagagtggagctgcagattttcaagaacaaccagcttgcgttcctttctcctgtggacatcttgaagatatcaggtaccctttccgtttacaaggtgatccacttggctgtggtgatgaagcttatgagctagtctgtagagatggcagagctataattcacatcaacacaggaaaatattttgtgacagacatctcctataacgagtctagaTtttgggttgttgatgctaatttagacaacagcagttgccctcttccactgtggaataatcttccctacttcaatgacatgggcactaagctgtacacttctgcagttcggtgggctacatttctaaattgctcacgggcgataaacaatggcatgtacatgcctgttgcttgcttgagtgggaatacttcttttgtttatgtcttgactacatcgagctcttactatgttcaaaacatcgagccttcttgtggatacttggctgtgattcctgtggatgatcatacaaagaatgtaccagactatgcaagctatgcagatgttgtgaaattcatgaggaatggttttcctgttttgtttcctcgagttgaatccccgagtcattctccagtcatcaaagcctgtgcgagagatacattccaaaactttaaggagcaaatgtctagtaggaacattcaaaactggacttctgccattattgggactgagctacaatttttaggatgtgtaattaattattactctagtgccacgcaagtttgggttactctcgttctggtatttgccgtagagattgttaagtgcattatagtactatgcaggttcatcttggcgccgttgactgttttgaccttcctcggttacaaataccggaaaacaaggatatctatcgacgcagtagagaagtttctccgaatgcagcaagctcatggtccaaagaggtatgcgtacacagaaatcactgcaatcacaggccatttcagggagaagctaggccaggggggttatggttctgtgtacaaaggtttccttcctggcgatggtcatgttgctatcaagatgctgagcaactccatgtgcaatggagaagaattcatcagcgaggtttccaccattagcaggatacaccatgtgaatgtggtgcgccttgttgggttttgctcggaggaacttaggagggctcttgtatacgagtacatgccctgtggatctctagacaagtacattttctcacctgagaagaatctatcttgggacaagctcaatgagattgctctaggaatcgctagagggatcgactacttgcatcatggttgtgatatgcagatcatgcactttgacatcaagccacacaacatccttctggatagcaacttcactccaaaagtcgccgactttgggctggccaagctatacccaagggacgacagcttggtgccggtgagtgctgcacggggaacgatagggtacatcgctcctgagatgatatctcgaagctttggcaccatttcatgcaaggctgatgtttacagctttgggatgttattgctggacattgctggtggtaggaggaacagggagcagaatacatccaactcagcccatctttattacccagctttggtgtatgattgcctaactcaacaagaagtgagcgagatttcagaggatgttggtatccactgggtagaaaggaagttgtgcattgttgggttctggtgcattcagatgaaaccagctgaacggccttcgatgagcgaggttgtggagatgctcgagtctgatgatcctgataacctgcaggtacctccgagacctttctttggtgtggatgatcacatctctgagatggatgattgctgccattcttcatcaaagtcaagtgcaatctcagaggatgactga
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| Protein seq | MAISGALFLPGIFQTLSILAVLGVLVTKSGAADFQEQPACVPFSCGHLEDIRYPFRLQGDPLGCGDEAYELVCRDGRAIIHINTGKYFVTDISYNESRFWVVDANLDNSSCPLPLWNNLPYFNDMGTKLYTSAVRWATFLNCSRAINNGMYMPVACLSGNTSFVYVLTTSSSYYVQNIEPSCGYLAVIPVDDHTKNVPDYASYADVVKFMRNGFPVLFPRVESPSHSPVIKACARDTFQNFKEQMSSRNIQNWTSAIIGTELQFLGCVINYYSSATQVWVTLVLVFAVEIVKCIIVLCRFILAPLTVLTFLGYKYRKTRISIDAVEKFLRMQQAHGPKRYAYTEITAITGHFREKLGQGGYGSVYKGFLPGDGHVAIKMLSNSMCNGEEFISEVSTISRIHHVNVVRLVGFCSEELRRALVYEYMPCGSLDKYIFSPEKNLSWDKLNEIALGIARGIDYLHHGCDMQIMHFDIKPHNILLDSNFTPKVADFGLAKLYPRDDSLVPVSAARGTIGYIAPEMISRSFGTISCKADVYSFGMLLLDIAGGRRNREQNTSNSAHLYYPALVYDCLTQQEVSEISEDVGIHWVERKLCIVGFWCIQMKPAERPSMSEVVEMLESDDPDNLQVPPRPFFGVDDHISEMDDCCHSSSKSSAISEDD |
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| Function | Rust resistance kinase Lr10 [UniProtKB/Swiss-Prot:P93604] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0000970 | OsNaBo_01g0000970.01 | Chr01 | 662138 | 664330 | + | NAM | ||
| CDS seq | atggccatttctggtgcactctttctccctggtatctttcaaaccttgagtatactagctgttcttggggttcttgtaactaagagtggagctgcagattttcaagaacaaccagcttgcgttcctttctcctgtggacatcttgaagatatcaggtaccctttccgtttacaaggtgatccacttggctgtggtgatgaagcttatgagctagtctgtagagatggcagagctataattcacatcaacacaggaaaatattttgtgacagacatctcctataacgagtctagaTtttgggttgttgatgctaatttagacaacagcagttgccctcttccactgtggaataatcttccctacttcaatgacatgggcactaagctgtacacttctgcagttcggtgggctacatttctaaattgctcacgggcgataaacaatggcatgtacatgcctgttgcttgcttgagtgggaatacttcttttgtttatgtcttgactacatcgagctcttactatgttcaaaacatcgagccttcttgtggatacttggctgtgattcctgtggatgatcatacaaagaatgtaccagactatgcaagctatgcagatgttgtgaaattcatgaggaatggttttcctgttttgtttcctcgagttgaatccccgagtcattctccagtcatcaaagcctgtgcgagagatacattccaaaactttaaggagcaaatgtctagtaggaacattcaaaactggacttctgccattattgggactgagctacaatttttaggatgtgtaattaattattactctagtgccacgcaagtttgggttactctcgttctggtatttgccgtagagattgttaagtgcattatagtactatgcaggttcatcttggcgccgttgactgttttgaccttcctcggttacaaataccggaaaacaaggatatctatcgacgcagtagagaagtttctccgaatgcagcaagctcatggtccaaagaggtatgcgtacacagaaatcactgcaatcacaggccatttcagggagaagctaggccaggggggttatggttctgtgtacaaaggtttccttcctggcgatggtcatgttgctatcaagatgctgagcaactccatgtgcaatggagaagaattcatcagcgaggtttccaccattagcaggatacaccatgtgaatgtggtgcgccttgttgggttttgctcggaggaacttaggagggctcttgtatacgagtacatgccctgtggatctctagacaagtacattttctcacctgagaagaatctatcttgggacaagctcaatgagattgctctaggaatcgctagagggatcgactacttgcatcatggttgtgatatgcagatcatgcactttgacatcaagccacacaacatccttctggatagcaacttcactccaaaagtcgccgactttgggctggccaagctatacccaagggacgacagcttggtgccggtgagtgctgcacggggaacgatagggtacatcgctcctgagatgatatctcgaagctttggcaccatttcatgcaaggctgatgtttacagctttgggatgttattgctggacattgctggtggtaggaggaacagggagcagaatacatccaactcagcccatctttattacccagctttggtgtatgattgcctaactcaacaagaagtgagcgagatttcagaggatgttggtatccactgggtagaaaggaagttgtgcattgttgggttctggtgcattcagatgaaaccagctgaacggccttcgatgagcgaggttgtggagatgctcgagtctgatgatcctgataacctgcaggtacctccgagacctttctttggtgtggatgatcacatctctgagatggatgattgctgccattcttcatcaaagtcaagtgcaatctcagaggatgactga
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| Protein seq | MAISGALFLPGIFQTLSILAVLGVLVTKSGAADFQEQPACVPFSCGHLEDIRYPFRLQGDPLGCGDEAYELVCRDGRAIIHINTGKYFVTDISYNESRFWVVDANLDNSSCPLPLWNNLPYFNDMGTKLYTSAVRWATFLNCSRAINNGMYMPVACLSGNTSFVYVLTTSSSYYVQNIEPSCGYLAVIPVDDHTKNVPDYASYADVVKFMRNGFPVLFPRVESPSHSPVIKACARDTFQNFKEQMSSRNIQNWTSAIIGTELQFLGCVINYYSSATQVWVTLVLVFAVEIVKCIIVLCRFILAPLTVLTFLGYKYRKTRISIDAVEKFLRMQQAHGPKRYAYTEITAITGHFREKLGQGGYGSVYKGFLPGDGHVAIKMLSNSMCNGEEFISEVSTISRIHHVNVVRLVGFCSEELRRALVYEYMPCGSLDKYIFSPEKNLSWDKLNEIALGIARGIDYLHHGCDMQIMHFDIKPHNILLDSNFTPKVADFGLAKLYPRDDSLVPVSAARGTIGYIAPEMISRSFGTISCKADVYSFGMLLLDIAGGRRNREQNTSNSAHLYYPALVYDCLTQQEVSEISEDVGIHWVERKLCIVGFWCIQMKPAERPSMSEVVEMLESDDPDNLQVPPRPFFGVDDHISEMDDCCHSSSKSSAISEDD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 7.069337 | 1.120715 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0113300 | RBH | 0.0 | 0.111526 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g02300 | RBH | 0.0 | 0.068260 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0113300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0001050 | RBH | 0.0 | 0.0 | 0.535689 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001020 | SBH | 0.0 | 0.725183 | 0.759583 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001200 | SBH | 0.140904 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001030 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001210 | SBH | 0.172035 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0016000 | SBH | 1.6942795 | 5.724617 | 3.7314985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001020 | RBH | 0.0 | 0.0 | 0.421379 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0013000 | RBH | 0.4041135 | 15.4643945 | 2.4626235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001020 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001050 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001130 | SBH | 0.287462 | 2.850632 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0001040 | RBH | 0.0 | 0.0 | 0.095365 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001010 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001030 | RBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001140 | SBH | 3.493958 | 2.049984 | 1.707907 |
